NO17G01470, NO17G01470 (gene) Nannochloropsis oceanica

Overview
NameNO17G01470
Unique NameNO17G01470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length900
Alignment locationchr17:442108..443007 -

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Properties
Property NameValue
DescriptionARM repeat-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:442108..443007 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
Homology
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BLAST of NO17G01470 vs. NCBI_GenBank
Match: OQR96236.1 (hypothetical protein ACHHYP_16557 [Achlya hypogyna])

HSP 1 Score: 76.3 bits (186), Expect = 1.900e-10
Identity = 57/219 (26.03%), Postives = 97/219 (44.29%), Query Frame = 0 
Query:   84 LIVQLLCGDIDGSLTITQGSRDPMEGPAITLVQELVIRLPSSQIESNVTMCLYRLAGSFSLHARVACAAVAPCVYDRLPSAQQLQVRGLLMRLIGDKSALTHSAVVGTLAELIDMMDCHSVKWLYLMLEASARDGFPRIRTKTLQ----ICYSLAQVFNSTAVTYSLRPTVLQDIHLNRCKLLPFVNSASEDPDWQVRAAFAYFCPRFVECFGTHWDDV 299
            L++Q+L    + +  I + +   M    +  ++ +   LP++     V   + RL+   S  +R+   A+ P VY R+     +Q+RG+  RL+ D++ L   A    L EL  ++   ++ W   MLE  A D    +R  +++    I   L ++ ++ A            +HL RC+LLP VN+   D DWQVR             FG    DV
Sbjct:  569 LLLQVLLNVFEAAAVIEKSTTWEM---VVDALKAIATSLPATAFSRTVPALVARLSLYSSPSSRIVALALLPIVYARVAGDLTVQLRGMFDRLLQDEAPLVRRAGAHVLPELTLLLGPRAMPWTLQMLEKVAGDPSDLVRLYSVKAVAGIGAGLPRIVDAAA------------LHLTRCQLLPLVNALVADSDWQVRMQMVASLGDLCSAFGPALADV 772
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BLAST of NO17G01470 vs. NCBI_GenBank
Match: XP_008875833.1 (hypothetical protein H310_11062 [Aphanomyces invadans] >ETV95640.1 hypothetical protein H310_11062 [Aphanomyces invadans])

HSP 1 Score: 71.2 bits (173), Expect = 6.000e-9
Identity = 50/162 (30.86%), Postives = 73/162 (45.06%), Query Frame = 0 
Query:  137 RLAGSFSLHARVACAAVAPCVYDRLPSAQQLQVRGLLMRLIGDKSALTHSAVVGTLAELIDMMDCHSVKWLYLMLEASARDGFPRIRTKTLQICYSLAQVFNSTAVTYSLRPTVLQDIHLNRCKLLPFVNSASEDPDWQVRAAFAYFCPRFVECFGTHWDDV 299
            RL+   S  +R+   A+ P VY R+    ++Q RGL  RL  D + L   A    L  L   +   S+ W+ L++E    D    +R   +Q    LA   N  AV  + R        L RC+L+P VN+   D DWQ+R       P+F+   G  + DV
Sbjct:  605 RLSLYSSPSSRIIPLALMPLVYSRVDGDLRVQFRGLFDRLTMDDAPLVRRAAAYILPALARAVGPESISWVVLLIEKMCADHSDLVRLYAVQAIAELADSVN--AVDDAAR-------RLVRCELVPRVNAFVTDTDWQIRHQTVTLIPQFISVLGIDFADV 757
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BLAST of NO17G01470 vs. NCBI_GenBank
Match: OQS03508.1 (hypothetical protein THRCLA_04181, partial [Thraustotheca clavata])

HSP 1 Score: 68.2 bits (165), Expect = 5.100e-8
Identity = 48/185 (25.95%), Postives = 80/185 (43.24%), Query Frame = 0 
Query:  115 VQELVIRLPSSQIESNVTMCLYRLAGSFSLHARVACAAVAPCVYDRLPSAQQLQVRGLLMRLIGDKSALTHSAVVGTLAELIDMMDCHSVKWLYLMLEASARDGFPRIRTKTLQICYSLAQVFNSTAVTYSLRPTVLQD-IHLNRCKLLPFVNSASEDPDWQVRAAFAYFCPRFVECFGTHWDDV 299
            ++++   LP    +  +   + RL+   S  +R+   A+ P VY R+     +Q+RG+  RL+ D++ L   A    L EL   +  +S  W   ML+  + D    +R   ++                +L   V +D + L  C+LLP +N+   D DWQVR       P  V   G  + DV
Sbjct:  613 LKKIASDLPDFVFQQTIPAMIARLSLYSSPSSRIVALALLPIVYKRVQGDMTVQLRGMYDRLLQDEAPLVRRAGAHVLPELALELGPNSSSWTLQMLDKISSDPSDLVRLYAVKAIAGCGD---------ALPQIVAEDQLQLILCQLLPMINTLVVDSDWQVRTQIVTCLPELVAGIGPKFTDV 788
The following BLAST results are available for this feature:
BLAST of NO17G01470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
OQR96236.11.900e-1026.03hypothetical protein ACHHYP_16557 [Achlya hypogyna... [more]
XP_008875833.16.000e-930.86hypothetical protein H310_11062 [Aphanomyces invad... [more]
OQS03508.15.100e-825.95hypothetical protein THRCLA_04181, partial [Thraus... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01470.1NO17G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599866gene_7741Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01470.1NO17G01470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01470 ID=NO17G01470|Name=NO17G01470|organism=Nannochloropsis oceanica|type=gene|length=900bp
ATGCAGTGGCAAGGACGAATACTGGAAATAGCCAACACCGTCCAATCTGA
CCTGCAGCATGCTCGCGCTCGCATCCACACGGCACAATCACGACTGACAG
CTCTAGGACTGAATGAGCGATTGAAGACCTTAAGTGGGCACTTGCAGACG
CTGGTGGAGCTGTTGCTGCGTGGTGTGTGCGGATGCGGGTGGTGGGAGCT
GGGGCAGCCGCCAGCAGTGGTGGTAGCGTTGCGTTGGCAGGTGATCGATT
TGATTGTGCAGCTCTTATGTGGAGATATAGATGGGTCCCTGACCATCACG
CAGGGTTCAAGAGACCCAATGGAAGGACCAGCAATTACTTTAGTGCAAGA
GCTAGTGATCCGATTGCCGTCAAGTCAAATTGAGAGCAATGTCACCATGT
GTCTGTACCGACTAGCGGGCTCATTCTCACTCCACGCCCGTGTGGCTTGC
GCGGCCGTAGCCCCCTGTGTCTATGATCGCCTCCCCTCCGCGCAGCAATT
GCAGGTCCGAGGGTTACTCATGCGCCTGATAGGGGATAAATCAGCCTTAA
CCCACTCTGCAGTTGTGGGAACGCTGGCCGAACTAATCGATATGATGGAC
TGTCACAGCGTCAAGTGGCTATATCTCATGCTCGAAGCCTCTGCCCGAGA
CGGCTTCCCTCGAATCCGTACCAAAACCCTACAAATCTGCTACTCCCTTG
CTCAAGTTTTCAACAGCACCGCCGTCACATACTCTCTCCGTCCAACAGTC
CTCCAAGATATACACCTCAACCGATGTAAGCTCCTGCCCTTCGTAAATTC
TGCCTCAGAAGATCCGGATTGGCAGGTGCGGGCGGCATTTGCTTATTTCT
GCCCGCGATTTGTCGAATGTTTTGGGACCCATTGGGATGACGTCTTTTAA
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protein sequence of NO17G01470.1

>NO17G01470.1-protein ID=NO17G01470.1-protein|Name=NO17G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MQWQGRILEIANTVQSDLQHARARIHTAQSRLTALGLNERLKTLSGHLQT
LVELLLRGVCGCGWWELGQPPAVVVALRWQVIDLIVQLLCGDIDGSLTIT
QGSRDPMEGPAITLVQELVIRLPSSQIESNVTMCLYRLAGSFSLHARVAC
AAVAPCVYDRLPSAQQLQVRGLLMRLIGDKSALTHSAVVGTLAELIDMMD
CHSVKWLYLMLEASARDGFPRIRTKTLQICYSLAQVFNSTAVTYSLRPTV
LQDIHLNRCKLLPFVNSASEDPDWQVRAAFAYFCPRFVECFGTHWDDVF*
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Synonyms
Publications