NO17G01470.1, NO17G01470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01470.1
Unique NameNO17G01470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length900
Alignment locationchr17:442108..443007 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:442108..443007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01470.1 vs.
Match: OEU19319.1 (ARM repeat-containing protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 87.8 bits (216), Expect = 6.200e-14
Identity = 51/177 (28.81%), Postives = 84/177 (47.46%), Query Frame = 0 
Query:  135 LYRLAGSFSLHARVACAAVAPCVYDRLPSAQQLQVRGLLMRLIGDKSALTHSAVVGTLAELIDMM-DCHSVKWLYLMLEASARDGFPRIRTKTLQICYSLAQVFNSTAV------------TYSLRPTVLQDIHLNRCKLLPFVNSASEDPDWQVRAAFAYFCPRFVECFGTHWDDV 299
            ++RLA S S  AR+   ++ P ++ RL    QLQ+RG++ R + D   +   +    L E+ +++ D   V WL LM E +  D  P++R+  + + + LA+   +  +              S    +  D++L +CKLLP     +ED    VR A A  C R  +  G HW  V
Sbjct:  622 VHRLAASRSTSARITACSLGPVLWSRLDFPHQLQLRGVITRALHDVEVIVRKSTATVLHEIAELVYDSRCVPWLVLMCERAMTDPEPQLRSAAMTLTWHLAEHLPNAFLGDASKGSQYLRRLPSREDPIFADVYLLQCKLLPVATRLAEDRAPHVRLAVAAQCERLCDALGDHWSSV 798
The following BLAST results are available for this feature:
BLAST of NO17G01470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OEU19319.16.200e-1428.81ARM repeat-containing protein, partial [Fragilario... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01470NO17G01470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01470.1NO17G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01470.1.cds1NO17G01470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01470.1 ID=NO17G01470.1|Name=NO17G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=900bp
ATGCAGTGGCAAGGACGAATACTGGAAATAGCCAACACCGTCCAATCTGA
CCTGCAGCATGCTCGCGCTCGCATCCACACGGCACAATCACGACTGACAG
CTCTAGGACTGAATGAGCGATTGAAGACCTTAAGTGGGCACTTGCAGACG
CTGGTGGAGCTGTTGCTGCGTGGTGTGTGCGGATGCGGGTGGTGGGAGCT
GGGGCAGCCGCCAGCAGTGGTGGTAGCGTTGCGTTGGCAGGTGATCGATT
TGATTGTGCAGCTCTTATGTGGAGATATAGATGGGTCCCTGACCATCACG
CAGGGTTCAAGAGACCCAATGGAAGGACCAGCAATTACTTTAGTGCAAGA
GCTAGTGATCCGATTGCCGTCAAGTCAAATTGAGAGCAATGTCACCATGT
GTCTGTACCGACTAGCGGGCTCATTCTCACTCCACGCCCGTGTGGCTTGC
GCGGCCGTAGCCCCCTGTGTCTATGATCGCCTCCCCTCCGCGCAGCAATT
GCAGGTCCGAGGGTTACTCATGCGCCTGATAGGGGATAAATCAGCCTTAA
CCCACTCTGCAGTTGTGGGAACGCTGGCCGAACTAATCGATATGATGGAC
TGTCACAGCGTCAAGTGGCTATATCTCATGCTCGAAGCCTCTGCCCGAGA
CGGCTTCCCTCGAATCCGTACCAAAACCCTACAAATCTGCTACTCCCTTG
CTCAAGTTTTCAACAGCACCGCCGTCACATACTCTCTCCGTCCAACAGTC
CTCCAAGATATACACCTCAACCGATGTAAGCTCCTGCCCTTCGTAAATTC
TGCCTCAGAAGATCCGGATTGGCAGGTGCGGGCGGCATTTGCTTATTTCT
GCCCGCGATTTGTCGAATGTTTTGGGACCCATTGGGATGACGTCTTTTAA
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protein sequence of NO17G01470.1

>NO17G01470.1-protein ID=NO17G01470.1-protein|Name=NO17G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MQWQGRILEIANTVQSDLQHARARIHTAQSRLTALGLNERLKTLSGHLQT
LVELLLRGVCGCGWWELGQPPAVVVALRWQVIDLIVQLLCGDIDGSLTIT
QGSRDPMEGPAITLVQELVIRLPSSQIESNVTMCLYRLAGSFSLHARVAC
AAVAPCVYDRLPSAQQLQVRGLLMRLIGDKSALTHSAVVGTLAELIDMMD
CHSVKWLYLMLEASARDGFPRIRTKTLQICYSLAQVFNSTAVTYSLRPTV
LQDIHLNRCKLLPFVNSASEDPDWQVRAAFAYFCPRFVECFGTHWDDVF*
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mRNA from alignment at chr17:442108..443007-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01470.1 ID=NO17G01470.1|Name=NO17G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=900bp|location=Sequence derived from alignment at chr17:442108..443007- (Nannochloropsis oceanica)
ATGCAGTGGCAAGGACGAATACTGGAAATAGCCAACACCGTCCAATCTGA
CCTGCAGCATGCTCGCGCTCGCATCCACACGGCACAATCACGACTGACAG
CTCTAGGACTGAATGAGCGATTGAAGACCTTAAGTGGGCACTTGCAGACG
CTGGTGGAGCTGTTGCTGCGTGGTGTGTGCGGATGCGGGTGGTGGGAGCT
GGGGCAGCCGCCAGCAGTGGTGGTAGCGTTGCGTTGGCAGGTGATCGATT
TGATTGTGCAGCTCTTATGTGGAGATATAGATGGGTCCCTGACCATCACG
CAGGGTTCAAGAGACCCAATGGAAGGACCAGCAATTACTTTAGTGCAAGA
GCTAGTGATCCGATTGCCGTCAAGTCAAATTGAGAGCAATGTCACCATGT
GTCTGTACCGACTAGCGGGCTCATTCTCACTCCACGCCCGTGTGGCTTGC
GCGGCCGTAGCCCCCTGTGTCTATGATCGCCTCCCCTCCGCGCAGCAATT
GCAGGTCCGAGGGTTACTCATGCGCCTGATAGGGGATAAATCAGCCTTAA
CCCACTCTGCAGTTGTGGGAACGCTGGCCGAACTAATCGATATGATGGAC
TGTCACAGCGTCAAGTGGCTATATCTCATGCTCGAAGCCTCTGCCCGAGA
CGGCTTCCCTCGAATCCGTACCAAAACCCTACAAATCTGCTACTCCCTTG
CTCAAGTTTTCAACAGCACCGCCGTCACATACTCTCTCCGTCCAACAGTC
CTCCAAGATATACACCTCAACCGATGTAAGCTCCTGCCCTTCGTAAATTC
TGCCTCAGAAGATCCGGATTGGCAGGTGCGGGCGGCATTTGCTTATTTCT
GCCCGCGATTTGTCGAATGTTTTGGGACCCATTGGGATGACGTCTTTTAA
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Coding sequence (CDS) from alignment at chr17:442108..443007-

>NO17G01470.1 ID=NO17G01470.1|Name=NO17G01470.1|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at chr17:442108..443007- (Nannochloropsis oceanica)
ATGCAGTGGCAAGGACGAATACTGGAAATAGCCAACACCGTCCAATCTGA
CCTGCAGCATGCTCGCGCTCGCATCCACACGGCACAATCACGACTGACAG
CTCTAGGACTGAATGAGCGATTGAAGACCTTAAGTGGGCACTTGCAGACG
CTGGTGGAGCTGTTGCTGCGTGGTGTGTGCGGATGCGGGTGGTGGGAGCT
GGGGCAGCCGCCAGCAGTGGTGGTAGCGTTGCGTTGGCAGGTGATCGATT
TGATTGTGCAGCTCTTATGTGGAGATATAGATGGGTCCCTGACCATCACG
CAGGGTTCAAGAGACCCAATGGAAGGACCAGCAATTACTTTAGTGCAAGA
GCTAGTGATCCGATTGCCGTCAAGTCAAATTGAGAGCAATGTCACCATGT
GTCTGTACCGACTAGCGGGCTCATTCTCACTCCACGCCCGTGTGGCTTGC
GCGGCCGTAGCCCCCTGTGTCTATGATCGCCTCCCCTCCGCGCAGCAATT
GCAGGTCCGAGGGTTACTCATGCGCCTGATAGGGGATAAATCAGCCTTAA
CCCACTCTGCAGTTGTGGGAACGCTGGCCGAACTAATCGATATGATGGAC
TGTCACAGCGTCAAGTGGCTATATCTCATGCTCGAAGCCTCTGCCCGAGA
CGGCTTCCCTCGAATCCGTACCAAAACCCTACAAATCTGCTACTCCCTTG
CTCAAGTTTTCAACAGCACCGCCGTCACATACTCTCTCCGTCCAACAGTC
CTCCAAGATATACACCTCAACCGATGTAAGCTCCTGCCCTTCGTAAATTC
TGCCTCAGAAGATCCGGATTGGCAGGTGCGGGCGGCATTTGCTTATTTCT
GCCCGCGATTTGTCGAATGTTTTGGGACCCATTGGGATGACGTCTTTTAA
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Synonyms
Publications