NO17G01370, NO17G01370 (gene) Nannochloropsis oceanica

Overview
NameNO17G01370
Unique NameNO17G01370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3454
Alignment locationchr17:421112..424565 -

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Properties
Property NameValue
DescriptionProtein nlrc3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:421112..424565 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO17G01370 vs. NCBI_GenBank
Match: EWM24272.1 (protein nlrc3 [Nannochloropsis gaditana])

HSP 1 Score: 463.8 bits (1192), Expect = 1.400e-126
Identity = 505/917 (55.07%), Postives = 581/917 (63.36%), Query Frame = 0 
Query:   69 DLPGNQRRLYHTNSSCTFWSEREPGRPGASIARSAQVQHESPLPLPFYAGDILWMLLSFMVQADKVNIVSTCRWLRAERANVLRELVIRQPQQGRAAKGVCVGSSIGLSESTSMAXXXXXXXXXXXXLKAAGMLEGMEVTDGEGVEEERSVADGVGEDAGEQLRRQNGTG--CVELGYE----TDVKQPIVSLLQYTPLVRRMRYRGEVCTLAGALISSATPRLSRLLALDLSETHMTPADAHSLAAAFAAGTCPKLNHLDLSDNPEMGEEGAQALGLALEHGALPLLQGLLLFGDKIYGGGLAIARAMQSGGLAQLEILDLSGAALGTACMLELSKVLTDGHCPLLEQLGMSDNNVEEKGVEALAVALGARARAGCAYLCKLHLGGNVVGSRGAEELAKALCQDGCGAKLALLELHSARLGREGICVIAEALKSGACDGLRELWLDDNTEGEEDGGIAVQDVMAVLAAGALPALEALGLNWTGLGSSGAAALASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLRVLVEGIKTGPGLAKLERLNLQDNWISRDGLARLQETVALVAARGGRLRLEFSGNGAQQILRREAGWILNGTRRICVGFVVGGGAVFGALTIKLA--RACLEILLIEEGGIICSWWALSTLLVLLVVEAAVVGFVQSYGLVRAWKQAPSSSDAVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINWDEDDEEDVEVEGGRVPGYVIWAILAGDTAVAALGGMMMCWWNAGLLCLWIAGVIMGFAI 978
            +LPG Q R+Y +      W             R   V+ +S       +GD+L  +LSFM+Q+D++ +VSTCRWLR ER  VLREL +RQPQQG AA  +    +  L E    +             KA GMLE +EV++ +  ++E           GE L RQ  +     EL       + +++  VSLLQ+TPL+RRMRYRGEV  L  AL   ATP L +LLALDL ET M    A  LAAAFA G CP+L HLDLSDNPE+GE GA ALG ALE GALP LQGLLLFGD+I  GGLAIARAM SG L+ LEILDLSGA LGTAC++ELS+ L  GHCP LEQ                                                      +DGCG++L+LLELHSARLG EGI  I EALK+GAC GLRELWLDDNTE  E    AV D+M VLA+GALPAL+ALGLNWTGLG SGAAALA        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             PGLA+LERLNLQDNWI R GLARL++ V++VAARGGRLRLE SGNG +QI+ REAGWILN T+R CVG +VGGG V GAL I L   R    + L      + S    + + +L  + A +VG  Q +GL+R+W Q   + D  T                                      +D+  E  RVPGYV+  ++ GD AV +  GM     +  LL  W  G+I+G  +
Sbjct:   95 NLPGGQSRIYSSVVPLCPWGSMVAHTTLFVHPRKVLVESKSS---SLCSGDMLSHVLSFMIQSDRLRMVSTCRWLRQERLYVLRELDMRQPQQGAAADCILWERTATLGEKAKSSCNTGSSVSQSCASKATGMLEALEVSEEDVAQQEEVSIQEQATAGGELLIRQRHSNGKASELSVSPIQGSTLERSAVSLLQHTPLLRRMRYRGEVHYLTRALTCPATPPLRQLLALDLCETSMNARGAKCLAAAFAEGVCPQLGHLDLSDNPEIGEAGAGALGRALEDGALPHLQGLLLFGDRIQNGGLAIARAMASGNLSNLEILDLSGAGLGTACVVELSRTLESGHCPRLEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGCGSRLSLLELHSARLGGEGIREITEALKAGACGGLRELWLDDNTENGERRDEAVHDIMEVLASGALPALQALGLNWTGLGGSGAAALALALTIFPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGLARLERLNLQDNWIGRQGLARLEDIVSVVAARGGRLRLELSGNGTRQIVSREAGWILNSTKRACVGLLVGGGTVIGALAINLVTKRPEYRLALPLRNEALQS----TIMAILYFLGALIVGIAQGHGLLRSWDQGSPAGDFRTNRWGSFEVGLAG--------------------------QDMTFERRRVPGYVMGVVILGDVAVTST-GMQRSAEDFFLLLEWTIGIIVGIGL 977
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BLAST of NO17G01370 vs. NCBI_GenBank
Match: GAX76219.1 (hypothetical protein CEUSTIGMA_g3663.t1 [Chlamydomonas eustigma])

HSP 1 Score: 70.1 bits (170), Expect = 4.400e-8
Identity = 88/265 (33.21%), Postives = 126/265 (47.55%), Query Frame = 0 
Query:  297 THMTPADAHSLAAAFAAGTCPKLNHLDLSDNPEMGEEGAQALGLALEHGALPLLQGLLLFGDKIYGGGLAIARAMQSGGL---AQLEILDLSGAALGTACMLELSKVLTDGHCPLLEQLGMSDNNVEEKGVEALAVALGARARAGCAYLCKLHLGGNVVGSRGAEELAKALCQDGCGAKLALLELHSARLGREGICVIAEA-LKSGACDGLRELWLDDNTEGEEDGGIAVQDVMAVLAAGALPALEALGLNWTGL-GSSGAAALA 557
            T +T   A +LA A     C  L  L LS+N ++G  G Q L  AL+      L+ L+L G+ +   G AI  A   GG+   A L  LDL G ALG A M+ L+K         L + G+ D  ++   +E+    + A+A   CA L +L L  N++  +GAE +A  +   GC    ALL  H+ R+G +G+  +  A L+      L+ L L DN  G E  G+ + D +A     + P L  L L    L GS G   LA
Sbjct:  903 TLVTEQGAAALAQALRHNACGHLFTLSLSNN-QLGNAGVQPLFKALQDNF--SLRTLMLRGNDL-DDGCAIFLAELFGGISANASLTCLDLGGNALGPAAMVALAKG--------LPRSGIRDLRLDCNDLESDPFCVLAKALPDCASLLRLDLSRNLMTGQGAEVMAAGIA--GCPNLQALLLAHN-RVGSKGVLALTGALLEPDKGKALKSLVLRDNDLGIE-AGVYLADFLA-----SSPPLSCLDLALNPLMGSIGVGCLA 1146
The following BLAST results are available for this feature:
BLAST of NO17G01370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24272.11.400e-12655.07protein nlrc3 [Nannochloropsis gaditana][more]
GAX76219.14.400e-833.21hypothetical protein CEUSTIGMA_g3663.t1 [Chlamydom... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002926NSK002926Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01370.1NO17G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568096gene_7752Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100020g65gene6199Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01370.1NO17G01370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01370 ID=NO17G01370|Name=NO17G01370|organism=Nannochloropsis oceanica|type=gene|length=3454bp
GTCACACATGCCTCTTCTTGGATGCCCTGTCCGCCTCGTCTTTGTTTCAA
TTAGTGTAGAAAGGTTCCTGGTCCGCACTATCAGGTGGCACCTCAGCTAG
CTGCGGTATGTCTTGCTTTCTTTGCTCCCACTTATAGTGCCGGACGTTAT
CTTTGGGGATTGAGACAAGCACGTGCATAGAAGATCTGTTCTTCGACACA
ATTACGATGCCCTTGCATCACCCAATTGATCGGATCTGTGCCTTGCTGAC
CACCCGTTCCGCGCACACAACCACACACGGACACACCTTGACGACAGCCT
CGACAATATGCTGCAAGTCCGGGCGCTATCACCACGAAAGTCGACGGCAC
AGACTTCACCTCTGCTGTCCAGCACCATTTGTGGCTGCAGCTCTACACGT
CACGAGGGCGACAGCAGCAATGGTAAAGGATCACAACAACATCACCATCA
CCATCGCCATCATCATCACCAGCAGCAGCAGCAGCAGCAGTCCTGGGAAG
AGTGCGAAGGAGATTTGCCGGGCAACCAGAGGCGCCTGTACCACACCAAT
TCTTCATGCACATTTTGGAGCGAACGTGAACCGGGGAGGCCCGGTGCTTC
CATTGCACGTTCCGCCCAGGTGCAGCACGAATCACCCTTGCCACTACCAT
TTTATGCGGGAGATATACTGTGGATGCTACTCTCCTTTATGGTCCAGGCA
GACAAAGTCAACATTGTCTCCACGTGCCGCTGGCTGCGCGCCGAACGGGC
CAATGTCCTCCGCGAGCTAGTCATACGCCAACCTCAGCAAGGACGAGCGG
CAAAGGGTGTATGCGTAGGGAGCAGCATCGGGTTGAGTGAAAGCACATCG
ATGGCGAGTAGCAGCAGTCTCAGTGGCATGCAGTCTTGCTCATTAAAGGC
TGCCGGGATGTTGGAGGGTATGGAGGTTACTGATGGAGAAGGTGTGGAAG
AGGAAAGGTCGGTAGCGGATGGGGTTGGTGAAGATGCAGGGGAACAGTTG
AGACGACAAAATGGGACAGGATGTGTAGAACTAGGGTATGAAACTGACGT
AAAGCAGCCTATCGTCTCCTTACTGCAATACACTCCCCTCGTCCGCCGTA
TGCGCTACCGGGGCGAGGTCTGCACGCTCGCAGGTGCCCTCATTTCTTCT
GCCACCCCCCGCCTTTCACGACTCCTTGCGCTGGATTTGTCTGAAACGCA
CATGACACCAGCGGATGCACATAGTCTTGCAGCGGCGTTTGCTGCTGGAA
CATGTCCAAAGCTTAATCATCTTGACCTTTCAGATAATCCCGAAATGGGG
GAGGAGGGTGCCCAGGCCTTGGGTCTTGCCTTGGAACATGGGGCTTTACC
ATTGCTGCAGGGTCTGTTGTTGTTCGGGGATAAAATTTATGGGGGGGGGT
TAGCGATCGCGAGGGCTATGCAGAGTGGTGGGTTGGCGCAGCTTGAGATC
CTTGATTTGTCCGGCGCGGCGTTGGGTACGGCGTGTATGCTGGAGTTGAG
CAAAGTGTTGACGGATGGACATTGTCCGCTCTTAGAGCAGCTAGGAATGA
GCGATAATAATGTGGAGGAGAAGGGAGTGGAAGCGCTGGCGGTCGCGCTC
GGGGCGAGAGCAAGGGCGGGTTGCGCCTATTTGTGTAAGCTGCACTTGGG
GGGGAATGTGGTGGGTTCACGAGGAGCGGAGGAGCTAGCCAAGGCGTTGT
GTCAGGATGGTTGTGGAGCAAAACTGGCACTCCTTGAGTTGCATAGTGCT
CGTTTGGGACGTGAGGGCATATGTGTTATTGCCGAAGCTTTGAAGAGTGG
AGCGTGTGATGGCTTAAGGGAGTTGTGGTTGGACGATAATACAGAAGGAG
AGGAGGATGGAGGGATTGCGGTGCAAGATGTCATGGCTGTGCTAGCTGCG
GGTGCATTACCAGCTCTGGAAGCTCTCGGGTTGAATTGGACAGGGTTGGG
GAGTAGTGGTGCGGCAGCCTTGGCTTCAGCTCTTACTTCTTATCCTCGTC
CTAAGTTGCATCGGCTCGATTTGAGGTCTACCTCTATCACCGGGACGGCC
CTTTTACCCCTGGTGGATGCGTTGTGTAAGCAGGCGTGCCCTTCCCTGCG
TTGGTTGGACCTGAGTGGAAATGCCCTCTTTCTTAACGGGGCGCGAGAAC
TGGCCCGAGCGCTCGTAGGAGGGGCAGGAAAGAACTTGCGGAGACTGGAT
TTACATGCCGTTGGGCTGGAAACGGAGGGGATGAGAGAGATCGCGCAGGC
ATTAAAGATTAATGCATGTCCTGAGTTAATGGGGTTGGGCTTGGCTTTGA
ATCGGATAGGGTGCCAGGGAGCGGTGGCTTTGGGAGATGCTATGGCGGCA
GGGGGATTACCGCATTTGGTGGGGTTGGAAGTGCATAAGAATGAGTTAGG
GGATGAAGGAGTGATGGCGATTTCGAATGTTTTGACTGCAGGGGCCTGTC
CGCTACTGCTTTACCTTGGGATGTCGCGGAGTCGAGCGACTGATTTGAGT
TTGCGCGTGTTGGTGGAAGGGATAAAAACAGGTCCTGGCCTGGCAAAGCT
CGAGCGGCTGAATCTTCAAGATAATTGGATCAGTAGAGATGGCTTGGCGC
GGTTACAAGAGACTGTGGCTCTAGTTGCAGCTCGGGGCGGGAGACTTCGG
TTAGAATTTTCGGGGAATGGGGCTCAGCAGATTTTGAGGAGGGAGGCAGG
GTGGATTTTGAATGGTACCCGGCGCATCTGTGTGGGATTTGTAGTGGGAG
GAGGTGCAGTTTTTGGGGCATTAACTATCAAACTTGCGAGGGCGTGCTTG
GAGATTCTTCTGATAGAGGAGGGGGGGATTATTTGCTCGTGGTGGGCTTT
GTCGACTTTGCTAGTGTTGCTTGTGGTGGAGGCTGCTGTGGTCGGCTTTG
TGCAGAGCTATGGTCTTGTCCGGGCTTGGAAACAAGCACCTAGCAGTAGC
GACGCTGTAACTGGTGCTGCTGCTACTAATGCTGCGGCTGCTGGTGCTGC
TACTACTGGCGCCGCTGCTACTGGTGCTGCTGCTACTGGTGCTGCTGCTG
TTATTAATTGGGATGAGGATGACGAAGAGGACGTGGAGGTCGAGGGGGGT
CGGGTGCCTGGATATGTCATTTGGGCGATTCTGGCGGGGGATACGGCTGT
GGCGGCGTTGGGGGGCATGATGATGTGTTGGTGGAATGCGGGACTGCTTT
GTCTGTGGATAGCTGGGGTCATCATGGGCTTTGCAATTGTATTGGGGAAG
GCTGGGGGATATTGAAAAATGGTGAGAGGAGAGAAGGAAAAGACGACTGT
TGACTTTATGACTGACTAATTAAGTTTGTTCTGTGCAGAAGGGAAAAGAA
AAGATGATGAGCCAGTGAAAGAAAAGAAATGGAAAAGAAGATAAAGAAAT
TCATTTAAAAAAGAAAGAGCTCATAGCCAATCGCATTGTCTAATCAGACT
TATT
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protein sequence of NO17G01370.1

>NO17G01370.1-protein ID=NO17G01370.1-protein|Name=NO17G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=986bp
MLQVRALSPRKSTAQTSPLLSSTICGCSSTRHEGDSSNGKGSQQHHHHHR
HHHHQQQQQQQSWEECEGDLPGNQRRLYHTNSSCTFWSEREPGRPGASIA
RSAQVQHESPLPLPFYAGDILWMLLSFMVQADKVNIVSTCRWLRAERANV
LRELVIRQPQQGRAAKGVCVGSSIGLSESTSMASSSSLSGMQSCSLKAAG
MLEGMEVTDGEGVEEERSVADGVGEDAGEQLRRQNGTGCVELGYETDVKQ
PIVSLLQYTPLVRRMRYRGEVCTLAGALISSATPRLSRLLALDLSETHMT
PADAHSLAAAFAAGTCPKLNHLDLSDNPEMGEEGAQALGLALEHGALPLL
QGLLLFGDKIYGGGLAIARAMQSGGLAQLEILDLSGAALGTACMLELSKV
LTDGHCPLLEQLGMSDNNVEEKGVEALAVALGARARAGCAYLCKLHLGGN
VVGSRGAEELAKALCQDGCGAKLALLELHSARLGREGICVIAEALKSGAC
DGLRELWLDDNTEGEEDGGIAVQDVMAVLAAGALPALEALGLNWTGLGSS
GAAALASALTSYPRPKLHRLDLRSTSITGTALLPLVDALCKQACPSLRWL
DLSGNALFLNGARELARALVGGAGKNLRRLDLHAVGLETEGMREIAQALK
INACPELMGLGLALNRIGCQGAVALGDAMAAGGLPHLVGLEVHKNELGDE
GVMAISNVLTAGACPLLLYLGMSRSRATDLSLRVLVEGIKTGPGLAKLER
LNLQDNWISRDGLARLQETVALVAARGGRLRLEFSGNGAQQILRREAGWI
LNGTRRICVGFVVGGGAVFGALTIKLARACLEILLIEEGGIICSWWALST
LLVLLVVEAAVVGFVQSYGLVRAWKQAPSSSDAVTGAAATNAAAAGAATT
GAAATGAAATGAAAVINWDEDDEEDVEVEGGRVPGYVIWAILAGDTAVAA
LGGMMMCWWNAGLLCLWIAGVIMGFAIVLGKAGGY*
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Synonyms
Publications