NO17G01350, NO17G01350 (gene) Nannochloropsis oceanica

Overview
NameNO17G01350
Unique NameNO17G01350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1212
Alignment locationchr17:415159..416370 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:415159..416370 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO17G01350 vs. NCBI_GenBank
Match: EWM24219.1 (hypothetical protein Naga_100020g67 [Nannochloropsis gaditana])

HSP 1 Score: 159.5 bits (402), Expect = 2.200e-35
Identity = 132/362 (36.46%), Postives = 178/362 (49.17%), Query Frame = 0 
Query:    1 MTSTGTRDFLNGLRVAGRLWGSHGDKITNAVQGRNYDDDQAAQKIDRIVGV---AATGAGGEEMRLSAGSPTIVHQQSRDLVVSPSSPFSMRQASSPMFGWGDDGHNSSVSAASGSLTRQNSSDFV-SXXXXXXXXXXXXXXXXXREMPLXXXXXQHSLDLASTSPTQSGNKSNASINSNNGFRPIGSPVSEGFKRDPSSSPVSFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSPSSSLDRQGMENIQQVVPSLPPQVLREAFKALTEREERAHGAEHAAAMAVHEVEKNEEKEG-----GPTVSISATEKVSLVHAAQTSRRKSQTFGSNLFNRK 354
            M+STGTRDFLNGLR+AGRLWGSHGDKIT A  GRNYDD++AA+ I+        A TGAG E+     GSP+I+ Q SRDLV+SPSSPF  RQ+SSP   WG++G+   +        RQ S DFV S        XXXXXXXXXR+MPL     QHS +L+ TSPT    K NA+++    FRPIG   S   K     SP S L                                                   +L+P         E   Q+  SLP  +++E    +   +   + ++H AA A+ +  +  E +G      P  ++SA +K  L++ A+   R +     ++F+RK
Sbjct:    1 MSSTGTRDFLNGLRIAGRLWGSHGDKITYAAHGRNYDDERAAKTIEEFQATTMSAVTGAGLEDQSRGNGSPSIMRQVSRDLVISPSSPFIARQSSSPTSNWGENGNPPFI-------MRQTSLDFVPSGASGVSSPXXXXXXXXXRDMPLSLILRQHSRELSPTSPTYKDKKLNANLDDAAVFRPIGGSQSGNSKL--WQSPTSLL-----TPFTSSSPMASPKALRPSGRRSPLAHSLSYEYTRIDEKGISRCVEASLAPP-------RETNHQIGTSLPNPIVKEQSNLMDIHDYEPYRSKHTAAKAILDAVQTSEYDGAETHLNPIAALSAADKADLINEARIRDRVTNVSKVSVFSRK 341
The following BLAST results are available for this feature:
BLAST of NO17G01350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24219.12.200e-3536.46hypothetical protein Naga_100020g67 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002924NSK002924Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01350.1NO17G01350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599912gene_7755Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100020g67gene6197Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01350.1NO17G01350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01350 ID=NO17G01350|Name=NO17G01350|organism=Nannochloropsis oceanica|type=gene|length=1212bp
ATGACAAGCACAGGGACCCGCGACTTCCTCAATGGCCTCCGGGTGGCTGG
CCGCCTGTGGGGCTCTCACGGTGACAAGATCACCAATGCAGTGCAGGGAC
GAAACTACGATGATGATCAAGCTGCCCAGAAGATAGATAGAATAGTCGGT
GTTGCTGCCACGGGCGCGGGTGGAGAGGAAATGCGGCTGAGTGCGGGAAG
CCCTACCATAGTGCACCAGCAATCAAGGGACTTGGTCGTCTCACCCTCAT
CTCCGTTCAGCATGCGGCAGGCTTCCTCTCCGATGTTTGGCTGGGGCGAC
GATGGGCATAATTCGTCTGTCTCTGCAGCATCTGGCAGCCTCACGCGTCA
AAACTCATCGGACTTTGTCTCGTCTACCAAGACTGCCGTCAACGCTACCC
CTTTCATTGCCCGACAAGCCTCGCGCGAAATGCCCTTGCCCGAGATTCTG
CGGCAACACTCCCTAGATCTCGCCTCAACCAGCCCCACCCAGTCTGGTAA
CAAGTCCAACGCCAGCATCAACAGCAATAACGGCTTCCGTCCCATCGGTA
GCCCTGTGAGCGAAGGTTTCAAACGAGATCCCTCATCGAGTCCCGTCTCC
TTCTTGCCCCCTCCGCTCCTTCCCGGCACCATAGCGGCTCCCACTGCTCT
CCGGCCTAGTGGCCTTCGTTCTCAGCTTCTCCGCTCTCAGTCATCTTACG
AACGAGGAAAGAACAATCGAGGGGCGGGTGGGAAGCAGGAGCAGCAGCAG
CAGCGCCAGGCCTTGTCTCCCTCTTCTTCCCTAGATCGCCAAGGTATGGA
GAACATCCAGCAGGTGGTACCAAGTTTGCCTCCGCAGGTCTTGCGGGAGG
CGTTTAAGGCCTTGACTGAGCGTGAGGAACGTGCACATGGGGCCGAGCAT
GCGGCGGCCATGGCGGTGCATGAGGTGGAGAAGAATGAGGAGAAGGAGGG
CGGTCCTACCGTCTCTATTTCTGCCACAGAGAAGGTGAGTTTGGTTCATG
CCGCCCAAACCAGCCGTCGTAAGAGTCAGACTTTTGGTAGTAATCTCTTC
AATCGTAAGAATCCAGGGAAATGTATCGTGAGCCGTACGAGCATCAATGC
GGAGCCTGAGAGTTTAGGTGGAGGAGGGGGTGGAGGTAGCGGGAAAGGCG
GTGCTATCGGTGTGGAGGAAGGGGGGGTTGGAGGCCTGGTCATTTCCTTT
CGCGTATCTTAA
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protein sequence of NO17G01350.1

>NO17G01350.1-protein ID=NO17G01350.1-protein|Name=NO17G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MTSTGTRDFLNGLRVAGRLWGSHGDKITNAVQGRNYDDDQAAQKIDRIVG
VAATGAGGEEMRLSAGSPTIVHQQSRDLVVSPSSPFSMRQASSPMFGWGD
DGHNSSVSAASGSLTRQNSSDFVSSTKTAVNATPFIARQASREMPLPEIL
RQHSLDLASTSPTQSGNKSNASINSNNGFRPIGSPVSEGFKRDPSSSPVS
FLPPPLLPGTIAAPTALRPSGLRSQLLRSQSSYERGKNNRGAGGKQEQQQ
QRQALSPSSSLDRQGMENIQQVVPSLPPQVLREAFKALTEREERAHGAEH
AAAMAVHEVEKNEEKEGGPTVSISATEKVSLVHAAQTSRRKSQTFGSNLF
NRKNPGKCIVSRTSINAEPESLGGGGGGGSGKGGAIGVEEGGVGGLVISF
RVS*
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Synonyms
Publications