NO17G01350.1, NO17G01350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01350.1
Unique NameNO17G01350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1212
Alignment locationchr17:415159..416370 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:415159..416370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01350.1 vs.
Match: EWM24219.1 (hypothetical protein Naga_100020g67 [Nannochloropsis gaditana])

HSP 1 Score: 208.4 bits (529), Expect = 4.200e-50
Identity = 149/362 (41.16%), Postives = 203/362 (56.08%), Query Frame = 0 
Query:    1 MTSTGTRDFLNGLRVAGRLWGSHGDKITNAVQGRNYDDDQAAQKIDRIVGV---AATGAGGEEMRLSAGSPTIVHQQSRDLVVSPSSPFSMRQASSPMFGWGDDGHNSSVSAASGSLTRQNSSDFVSSTKTAVNA-TPFIARQASREMPLPEILRQHSLDLASTSPTQSGNKSNASINSNNGFRPIGSPVSEGFKRDPSSSPVSFLPPPLLPGTIAAPTALRPSGLRSQLLRSQSSYERGKNNRGAGGKQEQQQQRQALSPSSSLDRQGMENIQQVVPSLPPQVLREAFKALTEREERAHGAEHAAAMAVHEVEKNEEKEG-----GPTVSISATEKVSLVHAAQTSRRKSQTFGSNLFNRK 354
            M+STGTRDFLNGLR+AGRLWGSHGDKIT A  GRNYDD++AA+ I+        A TGAG E+     GSP+I+ Q SRDLV+SPSSPF  RQ+SSP   WG++G+   +        RQ S DFV S  + V++  P IARQ+SR+MPL  ILRQHS +L+ TSPT    K NA+++    FRPIG   S   K     SP S L P      +A+P ALRPSG RS L  S S      + +G     E      +L+P         E   Q+  SLP  +++E    +   +   + ++H AA A+ +  +  E +G      P  ++SA +K  L++ A+   R +     ++F+RK
Sbjct:    1 MSSTGTRDFLNGLRIAGRLWGSHGDKITYAAHGRNYDDERAAKTIEEFQATTMSAVTGAGLEDQSRGNGSPSIMRQVSRDLVISPSSPFIARQSSSPTSNWGENGNPPFI-------MRQTSLDFVPSGASGVSSPPPLIARQSSRDMPLSLILRQHSRELSPTSPTYKDKKLNANLDDAAVFRPIGGSQSGNSKL--WQSPTSLLTPFTSSSPMASPKALRPSGRRSPLAHSLSYEYTRIDEKGISRCVE-----ASLAPP-------RETNHQIGTSLPNPIVKEQSNLMDIHDYEPYRSKHTAAKAILDAVQTSEYDGAETHLNPIAALSAADKADLINEARIRDRVTNVSKVSVFSRK 341
The following BLAST results are available for this feature:
BLAST of NO17G01350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24219.14.200e-5041.16hypothetical protein Naga_100020g67 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01350NO17G01350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01350.1NO17G01350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01350.1.cds1NO17G01350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01350.1 ID=NO17G01350.1|Name=NO17G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp
ATGACAAGCACAGGGACCCGCGACTTCCTCAATGGCCTCCGGGTGGCTGG
CCGCCTGTGGGGCTCTCACGGTGACAAGATCACCAATGCAGTGCAGGGAC
GAAACTACGATGATGATCAAGCTGCCCAGAAGATAGATAGAATAGTCGGT
GTTGCTGCCACGGGCGCGGGTGGAGAGGAAATGCGGCTGAGTGCGGGAAG
CCCTACCATAGTGCACCAGCAATCAAGGGACTTGGTCGTCTCACCCTCAT
CTCCGTTCAGCATGCGGCAGGCTTCCTCTCCGATGTTTGGCTGGGGCGAC
GATGGGCATAATTCGTCTGTCTCTGCAGCATCTGGCAGCCTCACGCGTCA
AAACTCATCGGACTTTGTCTCGTCTACCAAGACTGCCGTCAACGCTACCC
CTTTCATTGCCCGACAAGCCTCGCGCGAAATGCCCTTGCCCGAGATTCTG
CGGCAACACTCCCTAGATCTCGCCTCAACCAGCCCCACCCAGTCTGGTAA
CAAGTCCAACGCCAGCATCAACAGCAATAACGGCTTCCGTCCCATCGGTA
GCCCTGTGAGCGAAGGTTTCAAACGAGATCCCTCATCGAGTCCCGTCTCC
TTCTTGCCCCCTCCGCTCCTTCCCGGCACCATAGCGGCTCCCACTGCTCT
CCGGCCTAGTGGCCTTCGTTCTCAGCTTCTCCGCTCTCAGTCATCTTACG
AACGAGGAAAGAACAATCGAGGGGCGGGTGGGAAGCAGGAGCAGCAGCAG
CAGCGCCAGGCCTTGTCTCCCTCTTCTTCCCTAGATCGCCAAGGTATGGA
GAACATCCAGCAGGTGGTACCAAGTTTGCCTCCGCAGGTCTTGCGGGAGG
CGTTTAAGGCCTTGACTGAGCGTGAGGAACGTGCACATGGGGCCGAGCAT
GCGGCGGCCATGGCGGTGCATGAGGTGGAGAAGAATGAGGAGAAGGAGGG
CGGTCCTACCGTCTCTATTTCTGCCACAGAGAAGGTGAGTTTGGTTCATG
CCGCCCAAACCAGCCGTCGTAAGAGTCAGACTTTTGGTAGTAATCTCTTC
AATCGTAAGAATCCAGGGAAATGTATCGTGAGCCGTACGAGCATCAATGC
GGAGCCTGAGAGTTTAGGTGGAGGAGGGGGTGGAGGTAGCGGGAAAGGCG
GTGCTATCGGTGTGGAGGAAGGGGGGGTTGGAGGCCTGGTCATTTCCTTT
CGCGTATCTTAA
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protein sequence of NO17G01350.1

>NO17G01350.1-protein ID=NO17G01350.1-protein|Name=NO17G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MTSTGTRDFLNGLRVAGRLWGSHGDKITNAVQGRNYDDDQAAQKIDRIVG
VAATGAGGEEMRLSAGSPTIVHQQSRDLVVSPSSPFSMRQASSPMFGWGD
DGHNSSVSAASGSLTRQNSSDFVSSTKTAVNATPFIARQASREMPLPEIL
RQHSLDLASTSPTQSGNKSNASINSNNGFRPIGSPVSEGFKRDPSSSPVS
FLPPPLLPGTIAAPTALRPSGLRSQLLRSQSSYERGKNNRGAGGKQEQQQ
QRQALSPSSSLDRQGMENIQQVVPSLPPQVLREAFKALTEREERAHGAEH
AAAMAVHEVEKNEEKEGGPTVSISATEKVSLVHAAQTSRRKSQTFGSNLF
NRKNPGKCIVSRTSINAEPESLGGGGGGGSGKGGAIGVEEGGVGGLVISF
RVS*
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mRNA from alignment at chr17:415159..416370+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01350.1 ID=NO17G01350.1|Name=NO17G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp|location=Sequence derived from alignment at chr17:415159..416370+ (Nannochloropsis oceanica)
ATGACAAGCACAGGGACCCGCGACTTCCTCAATGGCCTCCGGGTGGCTGG
CCGCCTGTGGGGCTCTCACGGTGACAAGATCACCAATGCAGTGCAGGGAC
GAAACTACGATGATGATCAAGCTGCCCAGAAGATAGATAGAATAGTCGGT
GTTGCTGCCACGGGCGCGGGTGGAGAGGAAATGCGGCTGAGTGCGGGAAG
CCCTACCATAGTGCACCAGCAATCAAGGGACTTGGTCGTCTCACCCTCAT
CTCCGTTCAGCATGCGGCAGGCTTCCTCTCCGATGTTTGGCTGGGGCGAC
GATGGGCATAATTCGTCTGTCTCTGCAGCATCTGGCAGCCTCACGCGTCA
AAACTCATCGGACTTTGTCTCGTCTACCAAGACTGCCGTCAACGCTACCC
CTTTCATTGCCCGACAAGCCTCGCGCGAAATGCCCTTGCCCGAGATTCTG
CGGCAACACTCCCTAGATCTCGCCTCAACCAGCCCCACCCAGTCTGGTAA
CAAGTCCAACGCCAGCATCAACAGCAATAACGGCTTCCGTCCCATCGGTA
GCCCTGTGAGCGAAGGTTTCAAACGAGATCCCTCATCGAGTCCCGTCTCC
TTCTTGCCCCCTCCGCTCCTTCCCGGCACCATAGCGGCTCCCACTGCTCT
CCGGCCTAGTGGCCTTCGTTCTCAGCTTCTCCGCTCTCAGTCATCTTACG
AACGAGGAAAGAACAATCGAGGGGCGGGTGGGAAGCAGGAGCAGCAGCAG
CAGCGCCAGGCCTTGTCTCCCTCTTCTTCCCTAGATCGCCAAGGTATGGA
GAACATCCAGCAGGTGGTACCAAGTTTGCCTCCGCAGGTCTTGCGGGAGG
CGTTTAAGGCCTTGACTGAGCGTGAGGAACGTGCACATGGGGCCGAGCAT
GCGGCGGCCATGGCGGTGCATGAGGTGGAGAAGAATGAGGAGAAGGAGGG
CGGTCCTACCGTCTCTATTTCTGCCACAGAGAAGGTGAGTTTGGTTCATG
CCGCCCAAACCAGCCGTCGTAAGAGTCAGACTTTTGGTAGTAATCTCTTC
AATCGTAAGAATCCAGGGAAATGTATCGTGAGCCGTACGAGCATCAATGC
GGAGCCTGAGAGTTTAGGTGGAGGAGGGGGTGGAGGTAGCGGGAAAGGCG
GTGCTATCGGTGTGGAGGAAGGGGGGGTTGGAGGCCTGGTCATTTCCTTT
CGCGTATCTTAA
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Coding sequence (CDS) from alignment at chr17:415159..416370+

>NO17G01350.1 ID=NO17G01350.1|Name=NO17G01350.1|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at chr17:415159..416370+ (Nannochloropsis oceanica)
ATGACAAGCACAGGGACCCGCGACTTCCTCAATGGCCTCCGGGTGGCTGG
CCGCCTGTGGGGCTCTCACGGTGACAAGATCACCAATGCAGTGCAGGGAC
GAAACTACGATGATGATCAAGCTGCCCAGAAGATAGATAGAATAGTCGGT
GTTGCTGCCACGGGCGCGGGTGGAGAGGAAATGCGGCTGAGTGCGGGAAG
CCCTACCATAGTGCACCAGCAATCAAGGGACTTGGTCGTCTCACCCTCAT
CTCCGTTCAGCATGCGGCAGGCTTCCTCTCCGATGTTTGGCTGGGGCGAC
GATGGGCATAATTCGTCTGTCTCTGCAGCATCTGGCAGCCTCACGCGTCA
AAACTCATCGGACTTTGTCTCGTCTACCAAGACTGCCGTCAACGCTACCC
CTTTCATTGCCCGACAAGCCTCGCGCGAAATGCCCTTGCCCGAGATTCTG
CGGCAACACTCCCTAGATCTCGCCTCAACCAGCCCCACCCAGTCTGGTAA
CAAGTCCAACGCCAGCATCAACAGCAATAACGGCTTCCGTCCCATCGGTA
GCCCTGTGAGCGAAGGTTTCAAACGAGATCCCTCATCGAGTCCCGTCTCC
TTCTTGCCCCCTCCGCTCCTTCCCGGCACCATAGCGGCTCCCACTGCTCT
CCGGCCTAGTGGCCTTCGTTCTCAGCTTCTCCGCTCTCAGTCATCTTACG
AACGAGGAAAGAACAATCGAGGGGCGGGTGGGAAGCAGGAGCAGCAGCAG
CAGCGCCAGGCCTTGTCTCCCTCTTCTTCCCTAGATCGCCAAGGTATGGA
GAACATCCAGCAGGTGGTACCAAGTTTGCCTCCGCAGGTCTTGCGGGAGG
CGTTTAAGGCCTTGACTGAGCGTGAGGAACGTGCACATGGGGCCGAGCAT
GCGGCGGCCATGGCGGTGCATGAGGTGGAGAAGAATGAGGAGAAGGAGGG
CGGTCCTACCGTCTCTATTTCTGCCACAGAGAAGGTGAGTTTGGTTCATG
CCGCCCAAACCAGCCGTCGTAAGAGTCAGACTTTTGGTAGTAATCTCTTC
AATCGTAAGAATCCAGGGAAATGTATCGTGAGCCGTACGAGCATCAATGC
GGAGCCTGAGAGTTTAGGTGGAGGAGGGGGTGGAGGTAGCGGGAAAGGCG
GTGCTATCGGTGTGGAGGAAGGGGGGGTTGGAGGCCTGGTCATTTCCTTT
CGCGTATCTTAA
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Synonyms
Publications