NO17G01310, NO17G01310 (gene) Nannochloropsis oceanica

Overview
NameNO17G01310
Unique NameNO17G01310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2258
Alignment locationchr17:405531..407788 -

Link to JBrowse

Properties
Property NameValue
DescriptionAbortive infection protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:405531..407788 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003675CAAX_protease
Homology
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BLAST of NO17G01310 vs. NCBI_GenBank
Match: EWM24269.1 (abortive infection protein [Nannochloropsis gaditana])

HSP 1 Score: 199.1 bits (505), Expect = 1.700e-47
Identity = 131/265 (49.43%), Postives = 161/265 (60.75%), Query Frame = 0 
Query:   11 YGSAVMAVRLVPLPVLLFFFINLTALSTQAFVPTQARPPLPLSSVRPGL--KSFFGPQPSLFPRWPSCPNTQRGVQSTKLCSKKQ--QQDTPQQLKLNALEDLERRLKGYGGDEKSTVPFAYVTQTPKGKQRILLPPGPNQLLIAFSIIMALGLGALGQLVGSFISVLPFATLSLQPSQFALGALLALPLFAVDAVLQGLQEDTASEVYALSIFGTKTPAGLVLLLAAAVTLATAIGEEALFRGLIQQGIAQVSDFSSRCLGWVG 272
            +G+AV  + +  L  L+F          QAF+    R P P  S+   L       P  +  PR P   +    + S+   SK Q  Q D     K N LED E+RL+G     + +   AYV +TP+GKQRI LPPGPN+LLI FSIIMA  L ALG  VG F+ V P ATLSLQP+ F LGA+LA+PLF +DA+LQ +QEDTASEVY+LSIFGT TP   V+ LAAAVTLAT +GEE LFRGLIQQGIA ++        WVG
Sbjct:   87 FGTAVSRLFVSALVYLVF-----AGSIVQAFL--VPRLPCPFHSLSAPLLRDKISAPSSAFVPRLPYAADYTYSMHSSVRWSKPQRSQDDVRYSTKQNVLEDFEQRLRGSNAQSEESP--AYVAETPRGKQRIPLPPGPNRLLILFSIIMAAALAALGVTVGQFVDVSPLATLSLQPAMFLLGAVLAMPLFGIDALLQNVQEDTASEVYSLSIFGTTTPVLSVVALAAAVTLATGVGEETLFRGLIQQGIASLAG------PWVG 336
The following BLAST results are available for this feature:
BLAST of NO17G01310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24269.11.700e-4749.43abortive infection protein [Nannochloropsis gadita... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002920NSK002920Nannochloropsis salina (N. salina CCMP1776)gene


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100020g71gene6193Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01310.3NO17G01310.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G01310.2NO17G01310.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G01310.1NO17G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01310.3NO17G01310.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G01310.2NO17G01310.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G01310.1NO17G01310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01310 ID=NO17G01310|Name=NO17G01310|organism=Nannochloropsis oceanica|type=gene|length=2258bp
ACAGCTTTGTACGTGCTTTGGATCGGCTTCCGGAGGTTTCCTGGACCTTT
TTCCTCGCTCCTCGCTCCAAGCCCGTCTGTTTCGCACCACACCTTATGTC
CCTTCAAGAGCGACGACATGCGCGCTACGGTTCGGCCGTCATGGCCGTCC
GCCTCGTGCCCCTTCCTGTACTTCTGTTCTTCTTCATCAATCTAACAGCG
CTCTCTACGCAAGCATTTGTGCCGACCCAAGCTCGCCCACCGCTGCCTCT
GTCCTCCGTGAGGCCTGGTCTCAAATCCTTCTTTGGGCCGCAGCCCAGCC
TCTTCCCGAGATGGCCGTCCTGCCCAAACACCCAACGCGGCGTTCAGAGC
ACAAAGCTGTGTTCAAAGAAGCAGCAGCAAGATACTCCGCAACAGCTAAA
GTTAAATGCCCTGGAGGATTTAGAGCGACGCCTCAAGGGTTATGGTGGAG
ACGAGAAAAGCACAGTGCCGTTCGCCTATGTGACCCAGACGCCCAAGGGC
AAAgtaagtttccttgatgggtggtgggtgcgacagttccacttactcaa
tcgttctttctgttggcttgtgagtcactttgtctaaccgcctcattctc
tgccttcctcctttccgcacagCAACGCATCCTCCTCCCTCCAGGCCCTA
ATCAACTTTTAATTGCTTTCAGCATCATTATGGCCTTAGGTTTGGGAGCC
TTAGGACAACTCGTAGGTTCCTTCATAAGCGTCCTCCCCTTCGCGACCCT
TTCACTCCAACCTTCCCAGTTCGCGCTCGGCGCTCTCCTAGCCCTCCCTC
TTTTTGCAGTCGACGCTGgtaggtagatgtggggaggcagtaaggggggc
gaagggtgaaggatacatctattctgtggaaagaaatgcttgacatctga
aatgtatgctgactggacacagtattgctccttcttggtgtcctaaatac
tccaaggagtgcaagaagacacaagtagtgagctctaggtcctctcaaat
cggtaccaagaaacggccagcctcgtccaaatccgccctaacccatgccg
ctctatttttattttacattccacatttatagTGCTTCAAGGATTGCAAG
AAGACACAGCTAGCGAGGTTTATGCCCTCTCAATCTTCGGCACCAAGACC
CCTGCCGGCCTTGTCCTCCTCCTCGCTGCTGCCGTCACATTGGCGACAGC
CATTGGGGAAGAAGCGCTTTTTCGAGGATTGATTCAACAGGGGATTGCTC
AGgtaagtgattttagttcacgatgtttggggtgggtggggcattgactg
tctatctcacatggcagggtccgaggtagataggggtaatgatcgattgg
aacggcaggagagcagcaacaacagaacggccggagagcagcaacagcag
cagccgaggttgaacaatatttcccgtccctccgactatctaatatatca
cacagATTTTCGGTCCTTACTTAGGGCTTGGAATAGCAGCAGGCGTGTTT
GGCTTAGCTCACAAAATGGGGCCATCCGATGTCCTTTTTATTACCCTTTC
AGGGGCATATATGGGGGGCATCTTCTTGCTCTATGGGGACTTGACAATTA
CTATTGCGTTGCATGCGAGTTATGATTTTTTGATTTTGTGTGGAGCATAT
CTGAGGGCGAAGAGGAGGATTTCGGAGGGGAAAGGGGGGATGATGGTGTT
GGAAGAGGAAAAGGAAAGGAAGGAGGGGGGAGGGAAGAAGGAAAGTAGTG
GTGGAGAAGAATAGTTTTGTCTCATTTTTCTTCATGGGAAATATAGAACA
AAAAAGGAGATGAATAATGGAGCGAGTGAAAGGTAGGCTAGATCATATTA
TTGTTTTCTATTTGTACATTGTGTGCAGTGTAACTGATTGGTGCGGTGAC
ATTAACAGCAGCAGCAGCAGCAGCTGTGCAGTACAGACATATAGGTGGAT
AAGCGTGAGGACCATGAGATTTGGTTTTCTCCGCCTTTTTCTGGCGCTTT
AGTTTGATGCAAAAATGCATGCGTCAGAAGTGTTAGAAGAAAGATAGTCA
TCGGCGAGTCACGTACGCATAGAGAGAGAAGTCAAGAACATCGGCAGTGA
AATACCACGCTTCCGGTGGGGGCAATGACATTCATTGCTCTCTTGCGAGC
GAGACAATTTGTCTCGGTAAAAGTCTCTTACGTACAGAAAAGAGAGCTGC
TCACGTGGCAGGACGGCAACCGTCTTCGAAGGAATTAAAAAAAAAACTGT
GCAGAGAG
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protein sequence of NO17G01310.3

>NO17G01310.3-protein ID=NO17G01310.3-protein|Name=NO17G01310.3|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MSLQERRHARYGSAVMAVRLVPLPVLLFFFINLTALSTQAFVPTQARPPL
PLSSVRPGLKSFFGPQPSLFPRWPSCPNTQRGVQSTKLCSKKQQQDTPQQ
LKLNALEDLERRLKGYGGDEKSTVPFAYVTQTPKGKQRILLPPGPNQLLI
AFSIIMALGLGALGQLVGSFISVLPFATLSLQPSQFALGALLALPLFAVD
AVLQGLQEDTASEVYALSIFGTKTPAGLVLLLAAAVTLATAIGEEALFRG
LIQQGIAQVSDFSSRCLGWVGH*
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protein sequence of NO17G01310.2

>NO17G01310.2-protein ID=NO17G01310.2-protein|Name=NO17G01310.2|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MSLQERRHARYGSAVMAVRLVPLPVLLFFFINLTALSTQAFVPTQARPPL
PLSSVRPGLKSFFGPQPSLFPRWPSCPNTQRGVQSTKLCSKKQQQDTPQQ
LKLNALEDLERRLKGYGGDEKSTVPFAYVTQTPKGKQRILLPPGPNQLLI
AFSIIMALGLGALGQLVGSFISVLPFATLSLQPSQFALGALLALPLFAVD
AVLQGLQEDTASEVYALSIFGTKTPAGLVLLLAAAVTLATAIGEEALFRG
LIQQGIAQIFGPYLGLGIAAGVFGLAHKMGPSDVLFITLSGAYMGGIFLL
YGDLTITIALHASYDFLILCGAYLRAKRRISEGKGGMMVLEEEKERKEGG
GKKESSGGEE*
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protein sequence of NO17G01310.1

>NO17G01310.1-protein ID=NO17G01310.1-protein|Name=NO17G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MSLQERRHARYGSAVMAVRLVPLPVLLFFFINLTALSTQAFVPTQARPPL
PLSSVRPGLKSFFGPQPSLFPRWPSCPNTQRGVQSTKLCSKKQQQDTPQQ
LKLNALEDLERRLKGYGGDEKSTVPFAYVTQTPKGKQRILLPPGPNQLLI
AFSIIMALGLGALGQLVGSFISVLPFATLSLQPSQFALGALLALPLFAVD
AVLQGLQEDTASEVYALSIFGTKTPAGLVLLLAAAVTLATAIGEEALFRG
LIQQGIAQGPR*
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Synonyms
Publications