NO17G01310.1, NO17G01310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01310.1
Unique NameNO17G01310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1810
Alignment locationchr17:405531..407788 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:405531..407788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO17G01310.1 vs.
Match: EWM24269.1 (abortive infection protein [Nannochloropsis gaditana])

HSP 1 Score: 197.2 bits (500), Expect = 6.300e-47
Identity = 128/251 (51.00%), Postives = 156/251 (62.15%), Query Frame = 0
Query:   11 YGSAVMAVRLVPLPVLLFFFINLTALSTQAFVPTQARPPLPLSSVRPGL--KSFFGPQPSLFPRWPSCPNTQRGVQSTKLCSKKQ--QQDTPQQLKLNALEDLERRLKGYGGDEKSTVPFAYVTQTPKGKQRILLPPGPNQLLIAFSIIMALGLGALGQLVGSFISVLPFATLSLQPSQFALGALLALPLFAVDAVLQGLQEDTASEVYALSIFGTKTPAGLVLLLAAAVTLATAIGEEALFRGLIQQGIA 258
            +G+AV  + +  L  L+F          QAF+    R P P  S+   L       P  +  PR P   +    + S+   SK Q  Q D     K N LED E+RL+G     + +   AYV +TP+GKQRI LPPGPN+LLI FSIIMA  L ALG  VG F+ V P ATLSLQP+ F LGA+LA+PLF +DA+LQ +QEDTASEVY+LSIFGT TP   V+ LAAAVTLAT +GEE LFRGLIQQGIA
Sbjct:   87 FGTAVSRLFVSALVYLVF-----AGSIVQAFLVP--RLPCPFHSLSAPLLRDKISAPSSAFVPRLPYAADYTYSMHSSVRWSKPQRSQDDVRYSTKQNVLEDFEQRLRGSNAQSEESP--AYVAETPRGKQRIPLPPGPNRLLILFSIIMAAALAALGVTVGQFVDVSPLATLSLQPAMFLLGAVLAMPLFGIDALLQNVQEDTASEVYSLSIFGTTTPVLSVVALAAAVTLATGVGEETLFRGLIQQGIA 328          
The following BLAST results are available for this feature:
BLAST of NO17G01310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24269.16.300e-4751.00abortive infection protein [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01310NO17G01310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01310.1NO17G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01310.1.cds1NO17G01310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01310.1.cds2NO17G01310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01310.1.cds3NO17G01310.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01310.1.cds4NO17G01310.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01310.1 ID=NO17G01310.1|Name=NO17G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1810bp
ACAGCTTTGTACGTGCTTTGGATCGGCTTCCGGAGGTTTCCTGGACCTTT
TTCCTCGCTCCTCGCTCCAAGCCCGTCTGTTTCGCACCACACCTTATGTC
CCTTCAAGAGCGACGACATGCGCGCTACGGTTCGGCCGTCATGGCCGTCC
GCCTCGTGCCCCTTCCTGTACTTCTGTTCTTCTTCATCAATCTAACAGCG
CTCTCTACGCAAGCATTTGTGCCGACCCAAGCTCGCCCACCGCTGCCTCT
GTCCTCCGTGAGGCCTGGTCTCAAATCCTTCTTTGGGCCGCAGCCCAGCC
TCTTCCCGAGATGGCCGTCCTGCCCAAACACCCAACGCGGCGTTCAGAGC
ACAAAGCTGTGTTCAAAGAAGCAGCAGCAAGATACTCCGCAACAGCTAAA
GTTAAATGCCCTGGAGGATTTAGAGCGACGCCTCAAGGGTTATGGTGGAG
ACGAGAAAAGCACAGTGCCGTTCGCCTATGTGACCCAGACGCCCAAGGGC
AAACAACGCATCCTCCTCCCTCCAGGCCCTAATCAACTTTTAATTGCTTT
CAGCATCATTATGGCCTTAGGTTTGGGAGCCTTAGGACAACTCGTAGGTT
CCTTCATAAGCGTCCTCCCCTTCGCGACCCTTTCACTCCAACCTTCCCAG
TTCGCGCTCGGCGCTCTCCTAGCCCTCCCTCTTTTTGCAGTCGACGCTGT
GCTTCAAGGATTGCAAGAAGACACAGCTAGCGAGGTTTATGCCCTCTCAA
TCTTCGGCACCAAGACCCCTGCCGGCCTTGTCCTCCTCCTCGCTGCTGCC
GTCACATTGGCGACAGCCATTGGGGAAGAAGCGCTTTTTCGAGGATTGAT
TCAACAGGGGATTGCTCAGGGTCCGAGGTAGATAGGGGTAATGATCGATT
GGAACGGCAGGAGAGCAGCAACAACAGAACGGCCGGAGAGCAGCAACAGC
AGCAGCCGAGGTTGAACAATATTTCCCGTCCCTCCGACTATCTAATATAT
CACACAGATTTTCGGTCCTTACTTAGGGCTTGGAATAGCAGCAGGCGTGT
TTGGCTTAGCTCACAAAATGGGGCCATCCGATGTCCTTTTTATTACCCTT
TCAGGGGCATATATGGGGGGCATCTTCTTGCTCTATGGGGACTTGACAAT
TACTATTGCGTTGCATGCGAGTTATGATTTTTTGATTTTGTGTGGAGCAT
ATCTGAGGGCGAAGAGGAGGATTTCGGAGGGGAAAGGGGGGATGATGGTG
TTGGAAGAGGAAAAGGAAAGGAAGGAGGGGGGAGGGAAGAAGGAAAGTAG
TGGTGGAGAAGAATAGTTTTGTCTCATTTTTCTTCATGGGAAATATAGAA
CAAAAAAGGAGATGAATAATGGAGCGAGTGAAAGGTAGGCTAGATCATAT
TATTGTTTTCTATTTGTACATTGTGTGCAGTGTAACTGATTGGTGCGGTG
ACATTAACAGCAGCAGCAGCAGCAGCTGTGCAGTACAGACATATAGGTGG
ATAAGCGTGAGGACCATGAGATTTGGTTTTCTCCGCCTTTTTCTGGCGCT
TTAGTTTGATGCAAAAATGCATGCGTCAGAAGTGTTAGAAGAAAGATAGT
CATCGGCGAGTCACGTACGCATAGAGAGAGAAGTCAAGAACATCGGCAGT
GAAATACCACGCTTCCGGTGGGGGCAATGACATTCATTGCTCTCTTGCGA
GCGAGACAATTTGTCTCGGTAAAAGTCTCTTACGTACAGAAAAGAGAGCT
GCTCACGTGGCAGGACGGCAACCGTCTTCGAAGGAATTAAAAAAAAAACT
GTGCAGAGAG
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protein sequence of NO17G01310.1

>NO17G01310.1-protein ID=NO17G01310.1-protein|Name=NO17G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MSLQERRHARYGSAVMAVRLVPLPVLLFFFINLTALSTQAFVPTQARPPL
PLSSVRPGLKSFFGPQPSLFPRWPSCPNTQRGVQSTKLCSKKQQQDTPQQ
LKLNALEDLERRLKGYGGDEKSTVPFAYVTQTPKGKQRILLPPGPNQLLI
AFSIIMALGLGALGQLVGSFISVLPFATLSLQPSQFALGALLALPLFAVD
AVLQGLQEDTASEVYALSIFGTKTPAGLVLLLAAAVTLATAIGEEALFRG
LIQQGIAQGPR*
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mRNA from alignment at chr17:405531..407788-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01310.1 ID=NO17G01310.1|Name=NO17G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2258bp|location=Sequence derived from alignment at chr17:405531..407788- (Nannochloropsis oceanica)
ACAGCTTTGTACGTGCTTTGGATCGGCTTCCGGAGGTTTCCTGGACCTTT TTCCTCGCTCCTCGCTCCAAGCCCGTCTGTTTCGCACCACACCTTATGTC CCTTCAAGAGCGACGACATGCGCGCTACGGTTCGGCCGTCATGGCCGTCC GCCTCGTGCCCCTTCCTGTACTTCTGTTCTTCTTCATCAATCTAACAGCG CTCTCTACGCAAGCATTTGTGCCGACCCAAGCTCGCCCACCGCTGCCTCT GTCCTCCGTGAGGCCTGGTCTCAAATCCTTCTTTGGGCCGCAGCCCAGCC TCTTCCCGAGATGGCCGTCCTGCCCAAACACCCAACGCGGCGTTCAGAGC ACAAAGCTGTGTTCAAAGAAGCAGCAGCAAGATACTCCGCAACAGCTAAA GTTAAATGCCCTGGAGGATTTAGAGCGACGCCTCAAGGGTTATGGTGGAG ACGAGAAAAGCACAGTGCCGTTCGCCTATGTGACCCAGACGCCCAAGGGC AAAGTAAGTTTCCTTGATGGGTGGTGGGTGCGACAGTTCCACTTACTCAA TCGTTCTTTCTGTTGGCTTGTGAGTCACTTTGTCTAACCGCCTCATTCTC TGCCTTCCTCCTTTCCGCACAGCAACGCATCCTCCTCCCTCCAGGCCCTA ATCAACTTTTAATTGCTTTCAGCATCATTATGGCCTTAGGTTTGGGAGCC TTAGGACAACTCGTAGGTTCCTTCATAAGCGTCCTCCCCTTCGCGACCCT TTCACTCCAACCTTCCCAGTTCGCGCTCGGCGCTCTCCTAGCCCTCCCTC TTTTTGCAGTCGACGCTGGTAGGTAGATGTGGGGAGGCAGTAAGGGGGGC GAAGGGTGAAGGATACATCTATTCTGTGGAAAGAAATGCTTGACATCTGA AATGTATGCTGACTGGACACAGTATTGCTCCTTCTTGGTGTCCTAAATAC TCCAAGGAGTGCAAGAAGACACAAGTAGTGAGCTCTAGGTCCTCTCAAAT CGGTACCAAGAAACGGCCAGCCTCGTCCAAATCCGCCCTAACCCATGCCG CTCTATTTTTATTTTACATTCCACATTTATAGTGCTTCAAGGATTGCAAG AAGACACAGCTAGCGAGGTTTATGCCCTCTCAATCTTCGGCACCAAGACC CCTGCCGGCCTTGTCCTCCTCCTCGCTGCTGCCGTCACATTGGCGACAGC CATTGGGGAAGAAGCGCTTTTTCGAGGATTGATTCAACAGGGGATTGCTC AGGTAAGTGATTTTAGTTCACGATGTTTGGGGTGGGTGGGGCATTGACTG TCTATCTCACATGGCAGGGTCCGAGGTAGATAGGGGTAATGATCGATTGG AACGGCAGGAGAGCAGCAACAACAGAACGGCCGGAGAGCAGCAACAGCAG CAGCCGAGGTTGAACAATATTTCCCGTCCCTCCGACTATCTAATATATCA CACAGATTTTCGGTCCTTACTTAGGGCTTGGAATAGCAGCAGGCGTGTTT GGCTTAGCTCACAAAATGGGGCCATCCGATGTCCTTTTTATTACCCTTTC AGGGGCATATATGGGGGGCATCTTCTTGCTCTATGGGGACTTGACAATTA CTATTGCGTTGCATGCGAGTTATGATTTTTTGATTTTGTGTGGAGCATAT CTGAGGGCGAAGAGGAGGATTTCGGAGGGGAAAGGGGGGATGATGGTGTT GGAAGAGGAAAAGGAAAGGAAGGAGGGGGGAGGGAAGAAGGAAAGTAGTG GTGGAGAAGAATAGTTTTGTCTCATTTTTCTTCATGGGAAATATAGAACA AAAAAGGAGATGAATAATGGAGCGAGTGAAAGGTAGGCTAGATCATATTA TTGTTTTCTATTTGTACATTGTGTGCAGTGTAACTGATTGGTGCGGTGAC ATTAACAGCAGCAGCAGCAGCAGCTGTGCAGTACAGACATATAGGTGGAT AAGCGTGAGGACCATGAGATTTGGTTTTCTCCGCCTTTTTCTGGCGCTTT AGTTTGATGCAAAAATGCATGCGTCAGAAGTGTTAGAAGAAAGATAGTCA TCGGCGAGTCACGTACGCATAGAGAGAGAAGTCAAGAACATCGGCAGTGA AATACCACGCTTCCGGTGGGGGCAATGACATTCATTGCTCTCTTGCGAGC GAGACAATTTGTCTCGGTAAAAGTCTCTTACGTACAGAAAAGAGAGCTGC TCACGTGGCAGGACGGCAACCGTCTTCGAAGGAATTAAAAAAAAAACTGT GCAGAGAG
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Coding sequence (CDS) from alignment at chr17:405531..407788-

>NO17G01310.1 ID=NO17G01310.1|Name=NO17G01310.1|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at chr17:405531..407788- (Nannochloropsis oceanica)
ATGTCCCTTCAAGAGCGACGACATGCGCGCTACGGTTCGGCCGTCATGGC
CGTCCGCCTCGTGCCCCTTCCTGTACTTCTGTTCTTCTTCATCAATCTAA
CAGCGCTCTCTACGCAAGCATTTGTGCCGACCCAAGCTCGCCCACCGCTG
CCTCTGTCCTCCGTGAGGCCTGGTCTCAAATCCTTCTTTGGGCCGCAGCC
CAGCCTCTTCCCGAGATGGCCGTCCTGCCCAAACACCCAACGCGGCGTTC
AGAGCACAAAGCTGTGTTCAAAGAAGCAGCAGCAAGATACTCCGCAACAG
CTAAAGTTAAATGCCCTGGAGGATTTAGAGCGACGCCTCAAGGGTTATGG
TGGAGACGAGAAAAGCACAGTGCCGTTCGCCTATGTGACCCAGACGCCCA
AGGGCAAACAACGCATCCTCCTCCCTCCAGGCCCTAATCAACTTTTAATT
GCTTTCAGCATCATTATGGCCTTAGGTTTGGGAGCCTTAGGACAACTCGT
AGGTTCCTTCATAAGCGTCCTCCCCTTCGCGACCCTTTCACTCCAACCTT
CCCAGTTCGCGCTCGGCGCTCTCCTAGCCCTCCCTCTTTTTGCAGTCGAC
GCTGTGCTTCAAGGATTGCAAGAAGACACAGCTAGCGAGGTTTATGCCCT
CTCAATCTTCGGCACCAAGACCCCTGCCGGCCTTGTCCTCCTCCTCGCTG
CTGCCGTCACATTGGCGACAGCCATTGGGGAAGAAGCGCTTTTTCGAGGA
TTGATTCAACAGGGGATTGCTCAGGGTCCGAGGTAG
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Synonyms
Publications