NO17G01170, NO17G01170 (gene) Nannochloropsis oceanica

Overview
NameNO17G01170
Unique NameNO17G01170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length876
Alignment locationchr17:370395..371270 -

Link to JBrowse

Properties
Property NameValue
DescriptionOtu-like cysteine type protease
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:370395..371270 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003903UIM_dom
Vocabulary: Biological Process
TermDefinition
GO:0016579protein deubiquitination
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0008233peptidase activity
GO:0004843thiol-dependent ubiquitin-specific protease activity
Homology
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BLAST of NO17G01170 vs. NCBI_GenBank
Match: EWM24311.1 (otu-like cysteine type protease [Nannochloropsis gaditana])

HSP 1 Score: 68.9 bits (167), Expect = 2.900e-8
Identity = 143/273 (52.38%), Postives = 169/273 (61.90%), Query Frame = 0 
Query:    3 PGVMEDRALEMARQRRAAVGGRGLGAVEEMKRRSDEEATEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMIRKALEDSLNEGGREGEWVGXXXXXXXXXXXXXXXAGREGEXXXXXXXXXXXXXRLAEEEYQQALNLSM--VEAKGGEME-----GGMGEDGEVAAAIALSLQQ--------------------PPFLSSVAGAGTSNSDISQSSGGVG----EAYLREQQRNLEEARARKEAEDLRRALEVSI 245
            PG++E+RALEMA+QR+AA  GRG   +EE K         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++++K LEDSL   G +GE   XXXXXXXXXXXXXXXA  EG               + + EYQ+AL LSM  V A  G        G + EDGE+A AIALSL+                       FLS      +S+  ++  S G G    +AYLREQ  NLE+ARARKE  DL+RA+E S+
Sbjct:  650 PGMVENRALEMAQQRQAASTGRGAFGMEESKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEELVKKVLEDSLK--GSDGEQGPXXXXXXXXXXXXXXXA--EG-GLARDEGAAAEAATMVDHEYQEALTLSMSGVGADAGRQGEAVDFGELVEDGELARAIALSLKHIQGQDQSLQEDNYSVEEDHGASFLSMSPAPASSSPPVAADSFGSGASLEDAYLREQHENLEQARARKEEADLQRAVEASL 917
The following BLAST results are available for this feature:
BLAST of NO17G01170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24311.12.900e-852.38otu-like cysteine type protease [Nannochloropsis g... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL157nonsL157Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR036ncniR036Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR030ngnoR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002906NSK002906Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01170.1NO17G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|654376gene_7774Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100047g42gene6179Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01170.1NO17G01170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01170 ID=NO17G01170|Name=NO17G01170|organism=Nannochloropsis oceanica|type=gene|length=876bp
ATGCCGCCGGGGGTGATGGAGGATCGAGCGCTGGAAATGGCGAGGCAACG
GCGGGCGGCGGTAGGAGGGAGAGGTTTGGGAGCAGTGGAAGAAATGAAGA
GGAGATCGGATGAAGAGGCGACGGAACGAGCAGCAGTGGAGGCGGCCCTC
AGGGTATCGAGGGAGGACTTTGGCTCCTTGGCGGATTTGGAGACGGCGTT
GGAGGTCTCGGCGGAGACGCATTTGCAGCAGGAGCTGTTGAGGTCGGCGG
CGGCGACCACGGAGGAGGACATGATCAGGAAGGCTCTGGAAGATAGTTTG
AATGAGGGAGGGAGAGAGGGGGAGTGGGTTGGAGGGACGGAAGAGGAGAT
GGTCAAGGCAGCGTTGGAGCAGTCTCTGGCGGGGAGGGAGGGAGAGGAGG
AGGGTAGGGAGGAGGATGTGGTGGCGGCGGCAGCGAGACTGGCGGAGGAA
GAGTATCAGCAAGCGTTGAATTTGAGTATGGTTGAGGCAAAGGGGGGAGA
GATGGAGGGAGGGATGGGGGAGGACGGGGAGGTGGCGGCCGCTATAGCAT
TGTCTTTGCAGCAACCTCCATTTTTGTCGTCTGTTGCCGGTGCGGGCACG
AGCAACAGTGACATCAGCCAGAGTAGTGGTGGCGTGGGGGAGGCGTATCT
TCGCGAGCAGCAACGGAATTTGGAGGAAGCGCGTGCTCGGAAGGAAGCAG
AGGACCTTCGGAGGGCATTGGAAGTGTCGATACAGCCGCTTACTAGTAGC
AGGGAAGCAGGAGGAGGAGGACGAGAAGGAGGACGAGAGGGGGGGAGAGG
AGGCGGAGGAGGAGGAGGCGCAGAAGGGGGAGGTGGAGGAGGAGCAGGAG
CAGGAGCAGGAGCAGGAGATAATTGA
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protein sequence of NO17G01170.1

>NO17G01170.1-protein ID=NO17G01170.1-protein|Name=NO17G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MPPGVMEDRALEMARQRRAAVGGRGLGAVEEMKRRSDEEATERAAVEAAL
RVSREDFGSLADLETALEVSAETHLQQELLRSAAATTEEDMIRKALEDSL
NEGGREGEWVGGTEEEMVKAALEQSLAGREGEEEGREEDVVAAAARLAEE
EYQQALNLSMVEAKGGEMEGGMGEDGEVAAAIALSLQQPPFLSSVAGAGT
SNSDISQSSGGVGEAYLREQQRNLEEARARKEAEDLRRALEVSIQPLTSS
REAGGGGREGGREGGRGGGGGGGAEGGGGGGAGAGAGAGDN*
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Synonyms
Publications