NO17G01170.1, NO17G01170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01170.1
Unique NameNO17G01170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length876
Alignment locationchr17:370395..371270 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:370395..371270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01170.1 vs.
Match: EWM24311.1 (otu-like cysteine type protease [Nannochloropsis gaditana])

HSP 1 Score: 164.9 bits (416), Expect = 3.900e-37
Identity = 110/192 (57.29%), Postives = 138/192 (71.88%), Query Frame = 0 
Query:    3 PGVMEDRALEMARQRRAAVGGRGLGAVEEMKRRSDEEATERAAVEAALRVSREDFGSLADLETALEVSAETHLQQELLRSAAATTEEDMIRKALEDSLNEGGREGEWVGGTEEEMVKAALEQSLAGREGEEEGREEDVVAAAARLAEEEYQQALNLSM--VEAKGGEME-----GGMGEDGEVAAAIALSLQ 188
            PG++E+RALEMA+QR+AA  GRG   +EE K+RSD+EATE AAVEAAL+ SREDF S  DLETALE+SAE HLQ EL+RSA A+TEE++++K LEDSL   G +GE    TEEEMV+ A+++SLA  EG    R+E   A AA + + EYQ+AL LSM  V A  G        G + EDGE+A AIALSL+
Sbjct:  650 PGMVENRALEMAQQRQAASTGRGAFGMEESKQRSDQEATEEAAVEAALKASREDFDSFTDLETALELSAEAHLQAELMRSAVASTEEELVKKVLEDSLK--GSDGEQGPSTEEEMVRVAMKESLA--EG-GLARDEGAAAEAATMVDHEYQEALTLSMSGVGADAGRQGEAVDFGELVEDGELARAIALSLK 836
The following BLAST results are available for this feature:
BLAST of NO17G01170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24311.13.900e-3757.29otu-like cysteine type protease [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01170NO17G01170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01170.1NO17G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01170.1.cds1NO17G01170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01170.1 ID=NO17G01170.1|Name=NO17G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=876bp
ATGCCGCCGGGGGTGATGGAGGATCGAGCGCTGGAAATGGCGAGGCAACG
GCGGGCGGCGGTAGGAGGGAGAGGTTTGGGAGCAGTGGAAGAAATGAAGA
GGAGATCGGATGAAGAGGCGACGGAACGAGCAGCAGTGGAGGCGGCCCTC
AGGGTATCGAGGGAGGACTTTGGCTCCTTGGCGGATTTGGAGACGGCGTT
GGAGGTCTCGGCGGAGACGCATTTGCAGCAGGAGCTGTTGAGGTCGGCGG
CGGCGACCACGGAGGAGGACATGATCAGGAAGGCTCTGGAAGATAGTTTG
AATGAGGGAGGGAGAGAGGGGGAGTGGGTTGGAGGGACGGAAGAGGAGAT
GGTCAAGGCAGCGTTGGAGCAGTCTCTGGCGGGGAGGGAGGGAGAGGAGG
AGGGTAGGGAGGAGGATGTGGTGGCGGCGGCAGCGAGACTGGCGGAGGAA
GAGTATCAGCAAGCGTTGAATTTGAGTATGGTTGAGGCAAAGGGGGGAGA
GATGGAGGGAGGGATGGGGGAGGACGGGGAGGTGGCGGCCGCTATAGCAT
TGTCTTTGCAGCAACCTCCATTTTTGTCGTCTGTTGCCGGTGCGGGCACG
AGCAACAGTGACATCAGCCAGAGTAGTGGTGGCGTGGGGGAGGCGTATCT
TCGCGAGCAGCAACGGAATTTGGAGGAAGCGCGTGCTCGGAAGGAAGCAG
AGGACCTTCGGAGGGCATTGGAAGTGTCGATACAGCCGCTTACTAGTAGC
AGGGAAGCAGGAGGAGGAGGACGAGAAGGAGGACGAGAGGGGGGGAGAGG
AGGCGGAGGAGGAGGAGGCGCAGAAGGGGGAGGTGGAGGAGGAGCAGGAG
CAGGAGCAGGAGCAGGAGATAATTGA
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protein sequence of NO17G01170.1

>NO17G01170.1-protein ID=NO17G01170.1-protein|Name=NO17G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MPPGVMEDRALEMARQRRAAVGGRGLGAVEEMKRRSDEEATERAAVEAAL
RVSREDFGSLADLETALEVSAETHLQQELLRSAAATTEEDMIRKALEDSL
NEGGREGEWVGGTEEEMVKAALEQSLAGREGEEEGREEDVVAAAARLAEE
EYQQALNLSMVEAKGGEMEGGMGEDGEVAAAIALSLQQPPFLSSVAGAGT
SNSDISQSSGGVGEAYLREQQRNLEEARARKEAEDLRRALEVSIQPLTSS
REAGGGGREGGREGGRGGGGGGGAEGGGGGGAGAGAGAGDN*
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mRNA from alignment at chr17:370395..371270-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01170.1 ID=NO17G01170.1|Name=NO17G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=876bp|location=Sequence derived from alignment at chr17:370395..371270- (Nannochloropsis oceanica)
ATGCCGCCGGGGGTGATGGAGGATCGAGCGCTGGAAATGGCGAGGCAACG
GCGGGCGGCGGTAGGAGGGAGAGGTTTGGGAGCAGTGGAAGAAATGAAGA
GGAGATCGGATGAAGAGGCGACGGAACGAGCAGCAGTGGAGGCGGCCCTC
AGGGTATCGAGGGAGGACTTTGGCTCCTTGGCGGATTTGGAGACGGCGTT
GGAGGTCTCGGCGGAGACGCATTTGCAGCAGGAGCTGTTGAGGTCGGCGG
CGGCGACCACGGAGGAGGACATGATCAGGAAGGCTCTGGAAGATAGTTTG
AATGAGGGAGGGAGAGAGGGGGAGTGGGTTGGAGGGACGGAAGAGGAGAT
GGTCAAGGCAGCGTTGGAGCAGTCTCTGGCGGGGAGGGAGGGAGAGGAGG
AGGGTAGGGAGGAGGATGTGGTGGCGGCGGCAGCGAGACTGGCGGAGGAA
GAGTATCAGCAAGCGTTGAATTTGAGTATGGTTGAGGCAAAGGGGGGAGA
GATGGAGGGAGGGATGGGGGAGGACGGGGAGGTGGCGGCCGCTATAGCAT
TGTCTTTGCAGCAACCTCCATTTTTGTCGTCTGTTGCCGGTGCGGGCACG
AGCAACAGTGACATCAGCCAGAGTAGTGGTGGCGTGGGGGAGGCGTATCT
TCGCGAGCAGCAACGGAATTTGGAGGAAGCGCGTGCTCGGAAGGAAGCAG
AGGACCTTCGGAGGGCATTGGAAGTGTCGATACAGCCGCTTACTAGTAGC
AGGGAAGCAGGAGGAGGAGGACGAGAAGGAGGACGAGAGGGGGGGAGAGG
AGGCGGAGGAGGAGGAGGCGCAGAAGGGGGAGGTGGAGGAGGAGCAGGAG
CAGGAGCAGGAGCAGGAGATAATTGA
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Coding sequence (CDS) from alignment at chr17:370395..371270-

>NO17G01170.1 ID=NO17G01170.1|Name=NO17G01170.1|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at chr17:370395..371270- (Nannochloropsis oceanica)
ATGCCGCCGGGGGTGATGGAGGATCGAGCGCTGGAAATGGCGAGGCAACG
GCGGGCGGCGGTAGGAGGGAGAGGTTTGGGAGCAGTGGAAGAAATGAAGA
GGAGATCGGATGAAGAGGCGACGGAACGAGCAGCAGTGGAGGCGGCCCTC
AGGGTATCGAGGGAGGACTTTGGCTCCTTGGCGGATTTGGAGACGGCGTT
GGAGGTCTCGGCGGAGACGCATTTGCAGCAGGAGCTGTTGAGGTCGGCGG
CGGCGACCACGGAGGAGGACATGATCAGGAAGGCTCTGGAAGATAGTTTG
AATGAGGGAGGGAGAGAGGGGGAGTGGGTTGGAGGGACGGAAGAGGAGAT
GGTCAAGGCAGCGTTGGAGCAGTCTCTGGCGGGGAGGGAGGGAGAGGAGG
AGGGTAGGGAGGAGGATGTGGTGGCGGCGGCAGCGAGACTGGCGGAGGAA
GAGTATCAGCAAGCGTTGAATTTGAGTATGGTTGAGGCAAAGGGGGGAGA
GATGGAGGGAGGGATGGGGGAGGACGGGGAGGTGGCGGCCGCTATAGCAT
TGTCTTTGCAGCAACCTCCATTTTTGTCGTCTGTTGCCGGTGCGGGCACG
AGCAACAGTGACATCAGCCAGAGTAGTGGTGGCGTGGGGGAGGCGTATCT
TCGCGAGCAGCAACGGAATTTGGAGGAAGCGCGTGCTCGGAAGGAAGCAG
AGGACCTTCGGAGGGCATTGGAAGTGTCGATACAGCCGCTTACTAGTAGC
AGGGAAGCAGGAGGAGGAGGACGAGAAGGAGGACGAGAGGGGGGGAGAGG
AGGCGGAGGAGGAGGAGGCGCAGAAGGGGGAGGTGGAGGAGGAGCAGGAG
CAGGAGCAGGAGCAGGAGATAATTGA
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Synonyms
Publications