NO17G01100, NO17G01100 (gene) Nannochloropsis oceanica

Overview
NameNO17G01100
Unique NameNO17G01100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2336
Alignment locationchr17:344522..346857 -

Link to JBrowse

Properties
Property NameValue
DescriptionF-box protein sne-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:344522..346857 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
IPR001810F-box_dom
Homology
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BLAST of NO17G01100 vs. NCBI_GenBank
Match: EWM24277.1 (f-box protein sne-like protein [Nannochloropsis gaditana])

HSP 1 Score: 227.3 bits (578), Expect = 5.100e-56
Identity = 129/229 (56.33%), Postives = 146/229 (63.76%), Query Frame = 0 
Query:    5 TTTIRQHEPTRHVDSVPNALSLSDPYGTRAIIPVVRGRPRFPRRLALQFAMDEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGLDVMRSRCDHRVTCRALVLHPTKYNRDLFLHKNDAAALRRPRPTMETLPQDTLKQIFRFLPAHSLLASEIVCRLWRDLASMDDAHWEQLCKRAYGISPENFSPPPDPVKLLYMLTYSSLSEIKYGANGGGSGRMQGSLRFLF 234
            T   RQ  P  H+D   + L  +D   + AIIP+V+GRPRFP  +ALQF MDE +                               G           V CRALV+HP+K N +L LHK+  A  R PR TMETLPQDT+KQI RFLPA SLL SE+VCRLWRDLAS DDAHWE LCKR YG+SPENFSPPPDPVKLLYMLTYSSLSEIKYG++G GSGRM G L FLF
Sbjct:    7 TRLYRQQMPHNHMDEGISRLPGNDE--SLAIIPIVKGRPRFP-LMALQFTMDEDENSDENDVDGNLTRGRDWGDDKYEAISSNYMDGF-------QDGVACRALVIHPSKCNGNL-LHKDYLAGGRCPRATMETLPQDTIKQILRFLPAQSLLVSEMVCRLWRDLASTDDAHWEDLCKRTYGLSPENFSPPPDPVKLLYMLTYSSLSEIKYGSSGTGSGRM-GRLGFLF 223
The following BLAST results are available for this feature:
BLAST of NO17G01100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24277.15.100e-5656.33f-box protein sne-like protein [Nannochloropsis ga... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL157nonsL157Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR036ncniR036Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR030ngnoR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002916NSK002916Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01100.1NO17G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600008gene_7782Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100020g77gene6189Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01100.1NO17G01100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01100 ID=NO17G01100|Name=NO17G01100|organism=Nannochloropsis oceanica|type=gene|length=2336bp
ATGCCAAAGCACACGACAACGATTCGGCAGCATGAGCCGACGCGGCATGT
CGATTCGGTCCCGAACGCTTTGTCGCTTTCTGgtaagtgcctcgatgtcg
cctcatgaaaccatcgtttgaatgcgaaagccgagagcgcggcaatcaaa
tccaaaacatcgctgctccccatccactgcggttccattcaagcacaagc
tacctttttgtcatccttcttccatgctaggcccatatcgatccctgttg
cgaaatcaagatgtgatgtgtcagcagttggtgtctttgtcctccaacgc
ccgcgcacccattctttcatctcccgcctcacatacatacactcatccgt
tgtctccattcctttctccatataaatgcacattgaattcagATCCATAT
GGCACCCGAGCCATCATCCCCGTGGTGAGGGGCCGACCGCGCTTCCCACG
TAGGCTGGCCTTACAGTTCGCAATGGACGAGGGAGACGAGGACAAGGAAG
AGGAGGACAACGGCAGTTACGACAGCGCCGAGGAACGAGACCGGGAGGAG
GAGGAGCAAGAGGATGAGAAAGTGGGCGCGGGCCTGGATGTCATGAGGTC
AAGATGTGATCATCGAGTGACGTGCCGGGCGTTGGTGCTGCACCCTACAA
AGTATAACCGCGATTTGTTTTTGCACAAGgtaggtagtatatgtgccccc
ggcccctcctaggctcgtcttttccggttctcccgacatcaacacacaca
tgcataaatataccggcacacagtttatagttgtccttttaatcacacac
aaaacacctacagAACGATGCCGCGGCTTTACGACGCCCGCGCCCTACAA
TGGAGACCTTGCCGCAGGACACGCTGAAGCAAATTTTCCGGTTCCTGCCT
GCTCATTCTTTGTTGGCATCAGAGATTGTCTGTAGGCTCTGGAGGGACTT
GGCAAGCATGGATGATGCGCATTGGGAGgtacggcatgagggagggagag
agctggctgaatcgaaatttctgcgcccatccctctgacgctacctcccc
ctatctctatacattcctccctatatttcttcagCAACTTTGCAAACGGG
CCTATGGGATTTCACCTGAAAACTTTTCACCACCACCAGACCCCGTTAAG
CTACTGTACATGCTCACGTACTCCTCGCTTTCTGAAATTAAGTATGGAGC
GAACGGAGGAGGATCGGGCCGCATGCAAGGAAGCTTGCGGTTTTTGTTTT
GAGTGCTTTATTGATTGCCTGTGCGGCATAGTCATCGTTGATGAATGAGC
GGGAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTATGTGTGTATGTGTGTATGTGTGTGTGTGTGTATGTGTGTG
TGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGACAGTTGGTGGTGCTCGGGTGGCTTGGTGTGGAGGGGGTGGTGTATGT
TGAAGGGCTTGCGATGATATACTGATGCCATAAGGTGCCATAAGGTGATT
GTCTCCTTATTTGTGAGAAATATAAGCTGCGTTCAAAACCGTGTCCGTTC
AGTTTGGTCGCAGTGTTTGTTCCCTTGTGCTGGTGAGACGGCGCGGGGGC
AAAAGGACAGGGCCGCGAGGGCAGATAAAAGAGATTTTATAACAAGATTG
AGGTTCGCGTAGATACATAAAATACACATTTTTTACATAAACGGAATAAA
TGAAGGGAGAAAGATGGGAAATAGAGATGATCCTGTCTGTATAACGAGAA
AAAAAAGGATTGGGAACAGAGGAATGTAGAGAGACTGAGAAGAGGTCGGC
ATGCCGTTTGACTATATGTAACAAAGTGAAATCGAAAAGGGAATGATGAA
AGATTGTTTTTTTTTCGCTCGTTGGAACCGATAACGACTAAACCTTGGCC
TGCGCGGGCGCCTTACAGGAGGGATCAGTCAGCTGGTACCATTCCGAGGG
AGGCAGAAGTTGATCACAGGGGCGTTGATGCAGGCCTACAAAAGAAATAG
GCAAACGGAAGAGGAGTATTATCACGGCATTATTCTTTTCCATACATGTA
GGAAATAATTACCACAACATAAGCATAACTAACAAAATCAAAAAAAATCC
ACTGAAACAAAAAATAGAAAATTTATTTGCTGCCTCACGCTTTCCTTTGT
CAGAGCACGACGGTCAAAGTAAACAAACAAATTGATCAATTGATGAATGG
AAAAAGGGAAATAAAATGTGGAACAATGTAATAACAAACACGCGAAAAAA
GATATGGAAGAATAAAATAGAATGAATGACATGAAC
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protein sequence of NO17G01100.1

>NO17G01100.1-protein ID=NO17G01100.1-protein|Name=NO17G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MPKHTTTIRQHEPTRHVDSVPNALSLSDPYGTRAIIPVVRGRPRFPRRLA
LQFAMDEGDEDKEEEDNGSYDSAEERDREEEEQEDEKVGAGLDVMRSRCD
HRVTCRALVLHPTKYNRDLFLHKNDAAALRRPRPTMETLPQDTLKQIFRF
LPAHSLLASEIVCRLWRDLASMDDAHWEQLCKRAYGISPENFSPPPDPVK
LLYMLTYSSLSEIKYGANGGGSGRMQGSLRFLF*
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Synonyms
Publications