NO17G01100.1, NO17G01100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01100.1
Unique NameNO17G01100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1786
Alignment locationchr17:344522..346857 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:344522..346857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01100.1 vs.
Match: EWM24277.1 (f-box protein sne-like protein [Nannochloropsis gaditana])

HSP 1 Score: 229.2 bits (583), Expect = 1.300e-56
Identity = 136/229 (59.39%), Postives = 159/229 (69.43%), Query Frame = 0 
Query:    5 TTTIRQHEPTRHVDSVPNALSLSDPYGTRAIIPVVRGRPRFPRRLALQFAMDEGDEDKEEEDNGSYDSAEERDREEEEQEDEKVGAGLDVMRSRCDHRVTCRALVLHPTKYNRDLFLHKNDAAALRRPRPTMETLPQDTLKQIFRFLPAHSLLASEIVCRLWRDLASMDDAHWEQLCKRAYGISPENFSPPPDPVKLLYMLTYSSLSEIKYGANGGGSGRMQGSLRFLF 234
            T   RQ  P  H+D   + L  +D   + AIIP+V+GRPRFP  +ALQF MDE DE+ +E D    D    R R+  + + E + +            V CRALV+HP+K N +L LHK+  A  R PR TMETLPQDT+KQI RFLPA SLL SE+VCRLWRDLAS DDAHWE LCKR YG+SPENFSPPPDPVKLLYMLTYSSLSEIKYG++G GSGRM G L FLF
Sbjct:    7 TRLYRQQMPHNHMDEGISRLPGNDE--SLAIIPIVKGRPRFPL-MALQFTMDE-DENSDEND---VDGNLTRGRDWGDDKYEAISSNY---MDGFQDGVACRALVIHPSKCNGNL-LHKDYLAGGRCPRATMETLPQDTIKQILRFLPAQSLLVSEMVCRLWRDLASTDDAHWEDLCKRTYGLSPENFSPPPDPVKLLYMLTYSSLSEIKYGSSGTGSGRM-GRLGFLF 223
The following BLAST results are available for this feature:
BLAST of NO17G01100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24277.11.300e-5659.39f-box protein sne-like protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01100NO17G01100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01100.1NO17G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01100.1.cds1NO17G01100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01100.1.cds2NO17G01100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01100.1.cds3NO17G01100.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01100.1.cds4NO17G01100.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01100.1 ID=NO17G01100.1|Name=NO17G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1786bp
ATGCCAAAGCACACGACAACGATTCGGCAGCATGAGCCGACGCGGCATGT
CGATTCGGTCCCGAACGCTTTGTCGCTTTCTGATCCATATGGCACCCGAG
CCATCATCCCCGTGGTGAGGGGCCGACCGCGCTTCCCACGTAGGCTGGCC
TTACAGTTCGCAATGGACGAGGGAGACGAGGACAAGGAAGAGGAGGACAA
CGGCAGTTACGACAGCGCCGAGGAACGAGACCGGGAGGAGGAGGAGCAAG
AGGATGAGAAAGTGGGCGCGGGCCTGGATGTCATGAGGTCAAGATGTGAT
CATCGAGTGACGTGCCGGGCGTTGGTGCTGCACCCTACAAAGTATAACCG
CGATTTGTTTTTGCACAAGAACGATGCCGCGGCTTTACGACGCCCGCGCC
CTACAATGGAGACCTTGCCGCAGGACACGCTGAAGCAAATTTTCCGGTTC
CTGCCTGCTCATTCTTTGTTGGCATCAGAGATTGTCTGTAGGCTCTGGAG
GGACTTGGCAAGCATGGATGATGCGCATTGGGAGCAACTTTGCAAACGGG
CCTATGGGATTTCACCTGAAAACTTTTCACCACCACCAGACCCCGTTAAG
CTACTGTACATGCTCACGTACTCCTCGCTTTCTGAAATTAAGTATGGAGC
GAACGGAGGAGGATCGGGCCGCATGCAAGGAAGCTTGCGGTTTTTGTTTT
GAGTGCTTTATTGATTGCCTGTGCGGCATAGTCATCGTTGATGAATGAGC
GGGAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTATGTGTGTATGTGTGTATGTGTGTGTGTGTGTATGTGTGTG
TGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGACAGTTGGTGGTGCTCGGGTGGCTTGGTGTGGAGGGGGTGGTGTATGT
TGAAGGGCTTGCGATGATATACTGATGCCATAAGGTGCCATAAGGTGATT
GTCTCCTTATTTGTGAGAAATATAAGCTGCGTTCAAAACCGTGTCCGTTC
AGTTTGGTCGCAGTGTTTGTTCCCTTGTGCTGGTGAGACGGCGCGGGGGC
AAAAGGACAGGGCCGCGAGGGCAGATAAAAGAGATTTTATAACAAGATTG
AGGTTCGCGTAGATACATAAAATACACATTTTTTACATAAACGGAATAAA
TGAAGGGAGAAAGATGGGAAATAGAGATGATCCTGTCTGTATAACGAGAA
AAAAAAGGATTGGGAACAGAGGAATGTAGAGAGACTGAGAAGAGGTCGGC
ATGCCGTTTGACTATATGTAACAAAGTGAAATCGAAAAGGGAATGATGAA
AGATTGTTTTTTTTTCGCTCGTTGGAACCGATAACGACTAAACCTTGGCC
TGCGCGGGCGCCTTACAGGAGGGATCAGTCAGCTGGTACCATTCCGAGGG
AGGCAGAAGTTGATCACAGGGGCGTTGATGCAGGCCTACAAAAGAAATAG
GCAAACGGAAGAGGAGTATTATCACGGCATTATTCTTTTCCATACATGTA
GGAAATAATTACCACAACATAAGCATAACTAACAAAATCAAAAAAAATCC
ACTGAAACAAAAAATAGAAAATTTATTTGCTGCCTCACGCTTTCCTTTGT
CAGAGCACGACGGTCAAAGTAAACAAACAAATTGATCAATTGATGAATGG
AAAAAGGGAAATAAAATGTGGAACAATGTAATAACAAACACGCGAAAAAA
GATATGGAAGAATAAAATAGAATGAATGACATGAAC
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protein sequence of NO17G01100.1

>NO17G01100.1-protein ID=NO17G01100.1-protein|Name=NO17G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MPKHTTTIRQHEPTRHVDSVPNALSLSDPYGTRAIIPVVRGRPRFPRRLA
LQFAMDEGDEDKEEEDNGSYDSAEERDREEEEQEDEKVGAGLDVMRSRCD
HRVTCRALVLHPTKYNRDLFLHKNDAAALRRPRPTMETLPQDTLKQIFRF
LPAHSLLASEIVCRLWRDLASMDDAHWEQLCKRAYGISPENFSPPPDPVK
LLYMLTYSSLSEIKYGANGGGSGRMQGSLRFLF*
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mRNA from alignment at chr17:344522..346857-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01100.1 ID=NO17G01100.1|Name=NO17G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2336bp|location=Sequence derived from alignment at chr17:344522..346857- (Nannochloropsis oceanica)
ATGCCAAAGCACACGACAACGATTCGGCAGCATGAGCCGACGCGGCATGT
CGATTCGGTCCCGAACGCTTTGTCGCTTTCTGGTAAGTGCCTCGATGTCG
CCTCATGAAACCATCGTTTGAATGCGAAAGCCGAGAGCGCGGCAATCAAA
TCCAAAACATCGCTGCTCCCCATCCACTGCGGTTCCATTCAAGCACAAGC
TACCTTTTTGTCATCCTTCTTCCATGCTAGGCCCATATCGATCCCTGTTG
CGAAATCAAGATGTGATGTGTCAGCAGTTGGTGTCTTTGTCCTCCAACGC
CCGCGCACCCATTCTTTCATCTCCCGCCTCACATACATACACTCATCCGT
TGTCTCCATTCCTTTCTCCATATAAATGCACATTGAATTCAGATCCATAT
GGCACCCGAGCCATCATCCCCGTGGTGAGGGGCCGACCGCGCTTCCCACG
TAGGCTGGCCTTACAGTTCGCAATGGACGAGGGAGACGAGGACAAGGAAG
AGGAGGACAACGGCAGTTACGACAGCGCCGAGGAACGAGACCGGGAGGAG
GAGGAGCAAGAGGATGAGAAAGTGGGCGCGGGCCTGGATGTCATGAGGTC
AAGATGTGATCATCGAGTGACGTGCCGGGCGTTGGTGCTGCACCCTACAA
AGTATAACCGCGATTTGTTTTTGCACAAGGTAGGTAGTATATGTGCCCCC
GGCCCCTCCTAGGCTCGTCTTTTCCGGTTCTCCCGACATCAACACACACA
TGCATAAATATACCGGCACACAGTTTATAGTTGTCCTTTTAATCACACAC
AAAACACCTACAGAACGATGCCGCGGCTTTACGACGCCCGCGCCCTACAA
TGGAGACCTTGCCGCAGGACACGCTGAAGCAAATTTTCCGGTTCCTGCCT
GCTCATTCTTTGTTGGCATCAGAGATTGTCTGTAGGCTCTGGAGGGACTT
GGCAAGCATGGATGATGCGCATTGGGAGGTACGGCATGAGGGAGGGAGAG
AGCTGGCTGAATCGAAATTTCTGCGCCCATCCCTCTGACGCTACCTCCCC
CTATCTCTATACATTCCTCCCTATATTTCTTCAGCAACTTTGCAAACGGG
CCTATGGGATTTCACCTGAAAACTTTTCACCACCACCAGACCCCGTTAAG
CTACTGTACATGCTCACGTACTCCTCGCTTTCTGAAATTAAGTATGGAGC
GAACGGAGGAGGATCGGGCCGCATGCAAGGAAGCTTGCGGTTTTTGTTTT
GAGTGCTTTATTGATTGCCTGTGCGGCATAGTCATCGTTGATGAATGAGC
GGGAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTATGTGTGTATGTGTGTATGTGTGTGTGTGTGTATGTGTGTG
TGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGACAGTTGGTGGTGCTCGGGTGGCTTGGTGTGGAGGGGGTGGTGTATGT
TGAAGGGCTTGCGATGATATACTGATGCCATAAGGTGCCATAAGGTGATT
GTCTCCTTATTTGTGAGAAATATAAGCTGCGTTCAAAACCGTGTCCGTTC
AGTTTGGTCGCAGTGTTTGTTCCCTTGTGCTGGTGAGACGGCGCGGGGGC
AAAAGGACAGGGCCGCGAGGGCAGATAAAAGAGATTTTATAACAAGATTG
AGGTTCGCGTAGATACATAAAATACACATTTTTTACATAAACGGAATAAA
TGAAGGGAGAAAGATGGGAAATAGAGATGATCCTGTCTGTATAACGAGAA
AAAAAAGGATTGGGAACAGAGGAATGTAGAGAGACTGAGAAGAGGTCGGC
ATGCCGTTTGACTATATGTAACAAAGTGAAATCGAAAAGGGAATGATGAA
AGATTGTTTTTTTTTCGCTCGTTGGAACCGATAACGACTAAACCTTGGCC
TGCGCGGGCGCCTTACAGGAGGGATCAGTCAGCTGGTACCATTCCGAGGG
AGGCAGAAGTTGATCACAGGGGCGTTGATGCAGGCCTACAAAAGAAATAG
GCAAACGGAAGAGGAGTATTATCACGGCATTATTCTTTTCCATACATGTA
GGAAATAATTACCACAACATAAGCATAACTAACAAAATCAAAAAAAATCC
ACTGAAACAAAAAATAGAAAATTTATTTGCTGCCTCACGCTTTCCTTTGT
CAGAGCACGACGGTCAAAGTAAACAAACAAATTGATCAATTGATGAATGG
AAAAAGGGAAATAAAATGTGGAACAATGTAATAACAAACACGCGAAAAAA
GATATGGAAGAATAAAATAGAATGAATGACATGAAC
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Coding sequence (CDS) from alignment at chr17:344522..346857-

>NO17G01100.1 ID=NO17G01100.1|Name=NO17G01100.1|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at chr17:344522..346857- (Nannochloropsis oceanica)
ATGCCAAAGCACACGACAACGATTCGGCAGCATGAGCCGACGCGGCATGT
CGATTCGGTCCCGAACGCTTTGTCGCTTTCTGATCCATATGGCACCCGAG
CCATCATCCCCGTGGTGAGGGGCCGACCGCGCTTCCCACGTAGGCTGGCC
TTACAGTTCGCAATGGACGAGGGAGACGAGGACAAGGAAGAGGAGGACAA
CGGCAGTTACGACAGCGCCGAGGAACGAGACCGGGAGGAGGAGGAGCAAG
AGGATGAGAAAGTGGGCGCGGGCCTGGATGTCATGAGGTCAAGATGTGAT
CATCGAGTGACGTGCCGGGCGTTGGTGCTGCACCCTACAAAGTATAACCG
CGATTTGTTTTTGCACAAGAACGATGCCGCGGCTTTACGACGCCCGCGCC
CTACAATGGAGACCTTGCCGCAGGACACGCTGAAGCAAATTTTCCGGTTC
CTGCCTGCTCATTCTTTGTTGGCATCAGAGATTGTCTGTAGGCTCTGGAG
GGACTTGGCAAGCATGGATGATGCGCATTGGGAGCAACTTTGCAAACGGG
CCTATGGGATTTCACCTGAAAACTTTTCACCACCACCAGACCCCGTTAAG
CTACTGTACATGCTCACGTACTCCTCGCTTTCTGAAATTAAGTATGGAGC
GAACGGAGGAGGATCGGGCCGCATGCAAGGAAGCTTGCGGTTTTTGTTTT
GA
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Synonyms
Publications