NO17G01060, NO17G01060 (gene) Nannochloropsis oceanica

Overview
NameNO17G01060
Unique NameNO17G01060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1189
Alignment locationchr17:334494..335682 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:334494..335682 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029164PIG-Y
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO17G01060 vs. NCBI_GenBank
Match: XP_012209503.1 (hypothetical protein SPRG_14989 [Saprolegnia parasitica CBS 223.65] >KDO19795.1 hypothetical protein SPRG_14989 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 66.6 bits (161), Expect = 6.000e-8
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 0 
Query:   43 IWLGGWVLVLGSLLFLSFFLYSIVLAKLLPMRPSDGGKIRRWMDLVRDDEYFCLLVPLTLAPATVLGYLNWVAIEFYRAN 123
            IW  G+V+V  S  F   FLY IV+AKLLP  PSD       M+ +R D ++C L+PLT+    +  Y+NWV+++++R N
Sbjct:   24 IW--GYVIVGLSFAFFMTFLYLIVVAKLLP--PSDDPSRFPMMETIRQDHFYCYLIPLTIPAGFIAMYINWVSLKYFRHN 99
[Close]
BLAST of NO17G01060 vs. NCBI_GenBank
Match: XP_009842553.1 (hypothetical protein H257_15954 [Aphanomyces astaci] >ETV67990.1 hypothetical protein H257_15954 [Aphanomyces astaci])

HSP 1 Score: 66.2 bits (160), Expect = 7.900e-8
Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = 0 
Query:   43 IWLGGWVLVLGSLLFLSFFLYSIVLAKLLPMRPSDGGKIRRWMDLVRDDEYFCLLVPLTLAPATVLGYLNWVAIEFYRAN 123
            IW  G+V+V  S +F   F+Y IV+AK+LP  P   G+    MD +R D+++C LVPLT+  A +  Y++WV+++++R N
Sbjct:   14 IW--GYVIVSLSAIFFITFMYLIVVAKVLP--PPTPGRSFPMMDAIRGDQHYCYLVPLTIPVAFIAMYVSWVSLKYFRQN 89
[Close]
BLAST of NO17G01060 vs. NCBI_GenBank
Match: XP_012210666.1 (hypothetical protein SPRG_16050 [Saprolegnia parasitica CBS 223.65] >KDO18620.1 hypothetical protein SPRG_16050 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 66.2 bits (160), Expect = 7.900e-8
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 0 
Query:   43 IWLGGWVLVLGSLLFLSFFLYSIVLAKLLPMRPSDGGKIRRWMDLVRDDEYFCLLVPLTLAPATVLGYLNWVAIEFYRAN 123
            IW  G+V+V  S  F   FLY IV+AKLLP  PSD       M+ +R D ++C L+PLT+    +  Y+NWV+++++R N
Sbjct:   24 IW--GYVIVGLSFAFFMTFLYLIVVAKLLP--PSDDPARFPMMETIRQDHFYCYLIPLTIPAGFIAMYINWVSLKYFRHN 99
The following BLAST results are available for this feature:
BLAST of NO17G01060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_012209503.16.000e-842.50hypothetical protein SPRG_14989 [Saprolegnia paras... [more]
XP_009842553.17.900e-841.25hypothetical protein H257_15954 [Aphanomyces astac... [more]
XP_012210666.17.900e-842.50hypothetical protein SPRG_16050 [Saprolegnia paras... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR036ncniR036Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G01060.1NO17G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600026gene_7786Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G01060.1NO17G01060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G01060 ID=NO17G01060|Name=NO17G01060|organism=Nannochloropsis oceanica|type=gene|length=1189bp
AACCACCACATTATTTGAAGGGTCAAGGTAGAGTCCACTCCATTCATCCA
TCGCTTTTAGGCGCCTTGTGCTCCGGAACCACCACATTAAAATGAGGAGT
CCCAGAACCGAAGTAGCAAAGGGCCCTTTGACCCCTCTCTGCGGCCGAGC
CGCTCTAAGCAAGAACCACTGTGTTTTTTGTTTTCTAGGACGCATTTATC
CCATTTTACAGTCAGTGTCATGACTTTCAAGAAATACGGACATGTTAAAA
TGTGTACATCCATCCGATGGAGTCCATCCATCAATTTTCGGCTCTTGGGG
GTCCAGAACCACCACATTAAAACGAGTAGCCCTTGACGAAAATGATGCGA
GGAGGCTTGAACTGCTTTCCTTTTTTCTGCCTTTGCTTCCTCCCACATCT
ACCTTACTTACAAACAACACAGCAAACGTACACGCATCATAGGGAGACGA
AGTTTTAAGAGGCCCGTTCTTGACCGCCTGTCGTCGCCCAAAAGCTCCCG
GCGAGTCGCGGCAACGGCGGCGGCGCTTCCTTCCTACCCTCCTTCCGGCA
CTTCAGACCCCAGAAGCACCACCACGATGGATGGCCCGCCGCGCGACCTG
GAGCACCTCTTTGCAGAGCTGGGCTTGCGGAACTTTAGTTACAAGATGGA
GGGTTTGGAAGATGAAGAGGACGAGGCAATGGCGGACGgtacgtagtggc
gtggggtgtctgagcgtgcaagcttactcccgctatttatgcctttcgtt
gttaatcaacaattcattcacgctcgcgacttcgtcgtacccacctatct
cgctttccataccgccgatttccattgcactttccttcctccgtcctctc
cacaacacagCCCGTCGCTTCCGCATCTGGCTCGGTGGATGGGTCCTTGT
TCTCGGCTCCCTCCTTTTCCTGTCATTCTTCCTTTACAGCATCGTGCTAG
CCAAGCTCTTACCCATGAGACCGTCGGATGGTGGGAAGATTAGGAGATGG
ATGGACCTGGTGCGGGATGACGAGTACTTTTGCTTGTTGGTGCCGTTGAC
GCTGGCGCCGGCCACTGTGTTGGGGTATTTGAATTGGGTGGCCATAGAAT
TTTATAGGGCCAATTAATTTACCCTATGATTAAACGAATTAACAAGGGAC
GTAACCAAAGAATGAAACGGACGAGCAAACAAAAGGACA
back to top

protein sequence of NO17G01060.1

>NO17G01060.1-protein ID=NO17G01060.1-protein|Name=NO17G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=123bp
MDGPPRDLEHLFAELGLRNFSYKMEGLEDEEDEAMADARRFRIWLGGWVL
VLGSLLFLSFFLYSIVLAKLLPMRPSDGGKIRRWMDLVRDDEYFCLLVPL
TLAPATVLGYLNWVAIEFYRAN*
back to top
Synonyms
Publications