NO17G01060.1, NO17G01060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01060.1
Unique NameNO17G01060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1017
Alignment locationchr17:334494..335682 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:334494..335682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01060.1 vs.
Match: XP_009842553.1 (hypothetical protein H257_15954 [Aphanomyces astaci]; ETV67990.1 hypothetical protein H257_15954 [Aphanomyces astaci])

HSP 1 Score: 66.2 bits (160), Expect = 7.900e-8
Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = 0 
Query:   43 IWLGGWVLVLGSLLFLSFFLYSIVLAKLLPMRPSDGGKIRRWMDLVRDDEYFCLLVPLTLAPATVLGYLNWVAIEFYRAN 123
            IW  G+V+V  S +F   F+Y IV+AK+LP  P   G+    MD +R D+++C LVPLT+  A +  Y++WV+++++R N
Sbjct:   14 IW--GYVIVSLSAIFFITFMYLIVVAKVLP--PPTPGRSFPMMDAIRGDQHYCYLVPLTIPVAFIAMYVSWVSLKYFRQN 89
The following BLAST results are available for this feature:
BLAST of NO17G01060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009842553.17.900e-841.25hypothetical protein H257_15954 [Aphanomyces astac... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01060NO17G01060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01060.1NO17G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01060.1.cds1NO17G01060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01060.1.cds2NO17G01060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01060.1 ID=NO17G01060.1|Name=NO17G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1017bp
AACCACCACATTATTTGAAGGGTCAAGGTAGAGTCCACTCCATTCATCCA
TCGCTTTTAGGCGCCTTGTGCTCCGGAACCACCACATTAAAATGAGGAGT
CCCAGAACCGAAGTAGCAAAGGGCCCTTTGACCCCTCTCTGCGGCCGAGC
CGCTCTAAGCAAGAACCACTGTGTTTTTTGTTTTCTAGGACGCATTTATC
CCATTTTACAGTCAGTGTCATGACTTTCAAGAAATACGGACATGTTAAAA
TGTGTACATCCATCCGATGGAGTCCATCCATCAATTTTCGGCTCTTGGGG
GTCCAGAACCACCACATTAAAACGAGTAGCCCTTGACGAAAATGATGCGA
GGAGGCTTGAACTGCTTTCCTTTTTTCTGCCTTTGCTTCCTCCCACATCT
ACCTTACTTACAAACAACACAGCAAACGTACACGCATCATAGGGAGACGA
AGTTTTAAGAGGCCCGTTCTTGACCGCCTGTCGTCGCCCAAAAGCTCCCG
GCGAGTCGCGGCAACGGCGGCGGCGCTTCCTTCCTACCCTCCTTCCGGCA
CTTCAGACCCCAGAAGCACCACCACGATGGATGGCCCGCCGCGCGACCTG
GAGCACCTCTTTGCAGAGCTGGGCTTGCGGAACTTTAGTTACAAGATGGA
GGGTTTGGAAGATGAAGAGGACGAGGCAATGGCGGACGCCCGTCGCTTCC
GCATCTGGCTCGGTGGATGGGTCCTTGTTCTCGGCTCCCTCCTTTTCCTG
TCATTCTTCCTTTACAGCATCGTGCTAGCCAAGCTCTTACCCATGAGACC
GTCGGATGGTGGGAAGATTAGGAGATGGATGGACCTGGTGCGGGATGACG
AGTACTTTTGCTTGTTGGTGCCGTTGACGCTGGCGCCGGCCACTGTGTTG
GGGTATTTGAATTGGGTGGCCATAGAATTTTATAGGGCCAATTAATTTAC
CCTATGATTAAACGAATTAACAAGGGACGTAACCAAAGAATGAAACGGAC
GAGCAAACAAAAGGACA
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protein sequence of NO17G01060.1

>NO17G01060.1-protein ID=NO17G01060.1-protein|Name=NO17G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=123bp
MDGPPRDLEHLFAELGLRNFSYKMEGLEDEEDEAMADARRFRIWLGGWVL
VLGSLLFLSFFLYSIVLAKLLPMRPSDGGKIRRWMDLVRDDEYFCLLVPL
TLAPATVLGYLNWVAIEFYRAN*
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mRNA from alignment at chr17:334494..335682-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01060.1 ID=NO17G01060.1|Name=NO17G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1189bp|location=Sequence derived from alignment at chr17:334494..335682- (Nannochloropsis oceanica)
AACCACCACATTATTTGAAGGGTCAAGGTAGAGTCCACTCCATTCATCCA
TCGCTTTTAGGCGCCTTGTGCTCCGGAACCACCACATTAAAATGAGGAGT
CCCAGAACCGAAGTAGCAAAGGGCCCTTTGACCCCTCTCTGCGGCCGAGC
CGCTCTAAGCAAGAACCACTGTGTTTTTTGTTTTCTAGGACGCATTTATC
CCATTTTACAGTCAGTGTCATGACTTTCAAGAAATACGGACATGTTAAAA
TGTGTACATCCATCCGATGGAGTCCATCCATCAATTTTCGGCTCTTGGGG
GTCCAGAACCACCACATTAAAACGAGTAGCCCTTGACGAAAATGATGCGA
GGAGGCTTGAACTGCTTTCCTTTTTTCTGCCTTTGCTTCCTCCCACATCT
ACCTTACTTACAAACAACACAGCAAACGTACACGCATCATAGGGAGACGA
AGTTTTAAGAGGCCCGTTCTTGACCGCCTGTCGTCGCCCAAAAGCTCCCG
GCGAGTCGCGGCAACGGCGGCGGCGCTTCCTTCCTACCCTCCTTCCGGCA
CTTCAGACCCCAGAAGCACCACCACGATGGATGGCCCGCCGCGCGACCTG
GAGCACCTCTTTGCAGAGCTGGGCTTGCGGAACTTTAGTTACAAGATGGA
GGGTTTGGAAGATGAAGAGGACGAGGCAATGGCGGACGGTACGTAGTGGC
GTGGGGTGTCTGAGCGTGCAAGCTTACTCCCGCTATTTATGCCTTTCGTT
GTTAATCAACAATTCATTCACGCTCGCGACTTCGTCGTACCCACCTATCT
CGCTTTCCATACCGCCGATTTCCATTGCACTTTCCTTCCTCCGTCCTCTC
CACAACACAGCCCGTCGCTTCCGCATCTGGCTCGGTGGATGGGTCCTTGT
TCTCGGCTCCCTCCTTTTCCTGTCATTCTTCCTTTACAGCATCGTGCTAG
CCAAGCTCTTACCCATGAGACCGTCGGATGGTGGGAAGATTAGGAGATGG
ATGGACCTGGTGCGGGATGACGAGTACTTTTGCTTGTTGGTGCCGTTGAC
GCTGGCGCCGGCCACTGTGTTGGGGTATTTGAATTGGGTGGCCATAGAAT
TTTATAGGGCCAATTAATTTACCCTATGATTAAACGAATTAACAAGGGAC
GTAACCAAAGAATGAAACGGACGAGCAAACAAAAGGACA
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Coding sequence (CDS) from alignment at chr17:334494..335682-

>NO17G01060.1 ID=NO17G01060.1|Name=NO17G01060.1|organism=Nannochloropsis oceanica|type=CDS|length=369bp|location=Sequence derived from alignment at chr17:334494..335682- (Nannochloropsis oceanica)
ATGGATGGCCCGCCGCGCGACCTGGAGCACCTCTTTGCAGAGCTGGGCTT
GCGGAACTTTAGTTACAAGATGGAGGGTTTGGAAGATGAAGAGGACGAGG
CAATGGCGGACGCCCGTCGCTTCCGCATCTGGCTCGGTGGATGGGTCCTT
GTTCTCGGCTCCCTCCTTTTCCTGTCATTCTTCCTTTACAGCATCGTGCT
AGCCAAGCTCTTACCCATGAGACCGTCGGATGGTGGGAAGATTAGGAGAT
GGATGGACCTGGTGCGGGATGACGAGTACTTTTGCTTGTTGGTGCCGTTG
ACGCTGGCGCCGGCCACTGTGTTGGGGTATTTGAATTGGGTGGCCATAGA
ATTTTATAGGGCCAATTAA
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Synonyms
Publications