NO17G00950, NO17G00950 (gene) Nannochloropsis oceanica

Overview
NameNO17G00950
Unique NameNO17G00950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length852
Alignment locationchr17:306811..307662 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:306811..307662 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO17G00950 vs. NCBI_GenBank
Match: EWM21117.1 (hypothetical protein Naga_100041g10 [Nannochloropsis gaditana])

HSP 1 Score: 245.0 bits (624), Expect = 2.900e-61
Identity = 130/241 (53.94%), Postives = 168/241 (69.71%), Query Frame = 0 
Query:   39 NLPVGGWVRMKGLTIAPFGMGKGGGRGEGEELWAGLNASVNPMPEEGLEVHRVAVRLLYRLREEQHRASVAVREGKTAPCMELFVLPPPARRREHRSGFPRSFIVEALGSSPMTFFAVRARIIGWWPQDLRKFCTHVEGQWIYIFTLRLQDTSGEMDVVVNNEVGEWFFSKREGTVRAWNMEEEGKEGRAKLKAMGEILEEYKRQVSFDFVVKSYLV-GSAGEEGGRGGGRGMKRFRLLQP 279
            N+ VG W+R++GLTI P G G+GG  GE E+LWAG+NAS+  MP +  EVHRVAVR L RLR  Q R +      +TA CM LF  PPP R R+H S  P +++VEALGSS  T FA+R +I+GWWPQDL++FC   +G+W ++FTLRL+D +G +D VV  +V EWFF  R   +R  ++  EG E RA L+A+GE +EE+KRQ  FDFVVKSYL  G  G E G+  GR +KRFRLL+P
Sbjct:  222 NVGVGAWLRVRGLTIGPAGRGEGGD-GE-EKLWAGMNASLISMPAKSFEVHRVAVRFLQRLRMHQRRLAAQALLNQTAKCMRLFESPPP-RTRKHGSQHPLAYVVEALGSSTPTIFALRVKIVGWWPQDLQRFCVEDDGKWRFLFTLRLEDVTGALDAVVFGDVAEWFFVDR--GLRPTDLAGEGAETRASLQAIGEAMEEFKRQGYFDFVVKSYLTRGDRGRE-GKMRGRMVKRFRLLKP 456
The following BLAST results are available for this feature:
BLAST of NO17G00950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21117.12.900e-6153.94hypothetical protein Naga_100041g10 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR085ngnoR085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00950.1NO17G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00950.1NO17G00950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00950 ID=NO17G00950|Name=NO17G00950|organism=Nannochloropsis oceanica|type=gene|length=852bp
ATGTACTCTGAGGATCTGCCCTCAGCGGTGGGGTTTCAGGAGGGTGTGAG
GAGGCATGGATGTTGGATAGTGGTGAGGGTGGCTGAGGAGCATAAGTGGA
GGCTTGCACAGTTGAACCTGCCTGTTGGGGGTTGGGTTAGGATGAAAGGG
CTAACGATTGCCCCTTTTGGGATGGGGAAGGGGGGCGGGAGGGGAGAAGG
GGAGGAGCTATGGGCAGGATTGAATGCAAGTGTGAACCCGATGCCGGAAG
AGGGCCTGGAGGTGCATAGGGTGGCAGTACGGTTGCTGTACCGGCTGCGG
GAGGAGCAGCATAGAGCGTCAGTGGCCGTGAGGGAGGGGAAGACAGCGCC
TTGCATGGAGTTGTTTGTTCTTCCTCCACCGGCGCGGAGAAGGGAGCATC
GGTCAGGCTTCCCTCGGTCATTCATCGTGGAAGCGCTGGGGTCGAGCCCC
ATGACTTTCTTTGCAGTAAGGGCTAGGATTATCGGATGGTGGCCTCAGGA
TTTGAGGAAGTTCTGCACCCACGTTGAAGGGCAGTGGATTTACATTTTCA
CCTTGAGACTGCAGGATACGAGTGGGGAAATGGACGTGGTGGTGAATAAT
GAGGTAGGGGAGTGGTTTTTTTCGAAAAGGGAGGGGACGGTGCGGGCTTG
GAACATGGAGGAAGAAGGAAAAGAGGGCAGAGCGAAGCTGAAAGCGATGG
GGGAAATATTGGAAGAGTACAAGAGACAGGTTAGCTTTGATTTTGTGGTC
AAGTCTTACTTGGTAGGCAGCGCTGGAGAAGAGGGAGGAAGAGGAGGAGG
GAGGGGGATGAAGAGATTTCGGTTGTTGCAGCCGAATGATTATAAGACAT
AA
back to top

protein sequence of NO17G00950.1

>NO17G00950.1-protein ID=NO17G00950.1-protein|Name=NO17G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MYSEDLPSAVGFQEGVRRHGCWIVVRVAEEHKWRLAQLNLPVGGWVRMKG
LTIAPFGMGKGGGRGEGEELWAGLNASVNPMPEEGLEVHRVAVRLLYRLR
EEQHRASVAVREGKTAPCMELFVLPPPARRREHRSGFPRSFIVEALGSSP
MTFFAVRARIIGWWPQDLRKFCTHVEGQWIYIFTLRLQDTSGEMDVVVNN
EVGEWFFSKREGTVRAWNMEEEGKEGRAKLKAMGEILEEYKRQVSFDFVV
KSYLVGSAGEEGGRGGGRGMKRFRLLQPNDYKT*
back to top
Synonyms
Publications