NO17G00950.1, NO17G00950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00950.1
Unique NameNO17G00950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length852
Alignment locationchr17:306811..307662 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:306811..307662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G00950.1 vs.
Match: EWM21117.1 (hypothetical protein Naga_100041g10 [Nannochloropsis gaditana])

HSP 1 Score: 245.0 bits (624), Expect = 2.900e-61
Identity = 130/241 (53.94%), Postives = 168/241 (69.71%), Query Frame = 0 
Query:   39 NLPVGGWVRMKGLTIAPFGMGKGGGRGEGEELWAGLNASVNPMPEEGLEVHRVAVRLLYRLREEQHRASVAVREGKTAPCMELFVLPPPARRREHRSGFPRSFIVEALGSSPMTFFAVRARIIGWWPQDLRKFCTHVEGQWIYIFTLRLQDTSGEMDVVVNNEVGEWFFSKREGTVRAWNMEEEGKEGRAKLKAMGEILEEYKRQVSFDFVVKSYLV-GSAGEEGGRGGGRGMKRFRLLQP 279
            N+ VG W+R++GLTI P G G+GG  GE E+LWAG+NAS+  MP +  EVHRVAVR L RLR  Q R +      +TA CM LF  PPP R R+H S  P +++VEALGSS  T FA+R +I+GWWPQDL++FC   +G+W ++FTLRL+D +G +D VV  +V EWFF  R   +R  ++  EG E RA L+A+GE +EE+KRQ  FDFVVKSYL  G  G E G+  GR +KRFRLL+P
Sbjct:  222 NVGVGAWLRVRGLTIGPAGRGEGGD-GE-EKLWAGMNASLISMPAKSFEVHRVAVRFLQRLRMHQRRLAAQALLNQTAKCMRLFESPPP-RTRKHGSQHPLAYVVEALGSSTPTIFALRVKIVGWWPQDLQRFCVEDDGKWRFLFTLRLEDVTGALDAVVFGDVAEWFFVDR--GLRPTDLAGEGAETRASLQAIGEAMEEFKRQGYFDFVVKSYLTRGDRGRE-GKMRGRMVKRFRLLKP 456
The following BLAST results are available for this feature:
BLAST of NO17G00950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21117.12.900e-6153.94hypothetical protein Naga_100041g10 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00950NO17G00950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00950.1NO17G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00950.1.cds1NO17G00950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00950.1 ID=NO17G00950.1|Name=NO17G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=852bp
ATGTACTCTGAGGATCTGCCCTCAGCGGTGGGGTTTCAGGAGGGTGTGAG
GAGGCATGGATGTTGGATAGTGGTGAGGGTGGCTGAGGAGCATAAGTGGA
GGCTTGCACAGTTGAACCTGCCTGTTGGGGGTTGGGTTAGGATGAAAGGG
CTAACGATTGCCCCTTTTGGGATGGGGAAGGGGGGCGGGAGGGGAGAAGG
GGAGGAGCTATGGGCAGGATTGAATGCAAGTGTGAACCCGATGCCGGAAG
AGGGCCTGGAGGTGCATAGGGTGGCAGTACGGTTGCTGTACCGGCTGCGG
GAGGAGCAGCATAGAGCGTCAGTGGCCGTGAGGGAGGGGAAGACAGCGCC
TTGCATGGAGTTGTTTGTTCTTCCTCCACCGGCGCGGAGAAGGGAGCATC
GGTCAGGCTTCCCTCGGTCATTCATCGTGGAAGCGCTGGGGTCGAGCCCC
ATGACTTTCTTTGCAGTAAGGGCTAGGATTATCGGATGGTGGCCTCAGGA
TTTGAGGAAGTTCTGCACCCACGTTGAAGGGCAGTGGATTTACATTTTCA
CCTTGAGACTGCAGGATACGAGTGGGGAAATGGACGTGGTGGTGAATAAT
GAGGTAGGGGAGTGGTTTTTTTCGAAAAGGGAGGGGACGGTGCGGGCTTG
GAACATGGAGGAAGAAGGAAAAGAGGGCAGAGCGAAGCTGAAAGCGATGG
GGGAAATATTGGAAGAGTACAAGAGACAGGTTAGCTTTGATTTTGTGGTC
AAGTCTTACTTGGTAGGCAGCGCTGGAGAAGAGGGAGGAAGAGGAGGAGG
GAGGGGGATGAAGAGATTTCGGTTGTTGCAGCCGAATGATTATAAGACAT
AA
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protein sequence of NO17G00950.1

>NO17G00950.1-protein ID=NO17G00950.1-protein|Name=NO17G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MYSEDLPSAVGFQEGVRRHGCWIVVRVAEEHKWRLAQLNLPVGGWVRMKG
LTIAPFGMGKGGGRGEGEELWAGLNASVNPMPEEGLEVHRVAVRLLYRLR
EEQHRASVAVREGKTAPCMELFVLPPPARRREHRSGFPRSFIVEALGSSP
MTFFAVRARIIGWWPQDLRKFCTHVEGQWIYIFTLRLQDTSGEMDVVVNN
EVGEWFFSKREGTVRAWNMEEEGKEGRAKLKAMGEILEEYKRQVSFDFVV
KSYLVGSAGEEGGRGGGRGMKRFRLLQPNDYKT*
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mRNA from alignment at chr17:306811..307662+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00950.1 ID=NO17G00950.1|Name=NO17G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=852bp|location=Sequence derived from alignment at chr17:306811..307662+ (Nannochloropsis oceanica)
ATGTACTCTGAGGATCTGCCCTCAGCGGTGGGGTTTCAGGAGGGTGTGAG
GAGGCATGGATGTTGGATAGTGGTGAGGGTGGCTGAGGAGCATAAGTGGA
GGCTTGCACAGTTGAACCTGCCTGTTGGGGGTTGGGTTAGGATGAAAGGG
CTAACGATTGCCCCTTTTGGGATGGGGAAGGGGGGCGGGAGGGGAGAAGG
GGAGGAGCTATGGGCAGGATTGAATGCAAGTGTGAACCCGATGCCGGAAG
AGGGCCTGGAGGTGCATAGGGTGGCAGTACGGTTGCTGTACCGGCTGCGG
GAGGAGCAGCATAGAGCGTCAGTGGCCGTGAGGGAGGGGAAGACAGCGCC
TTGCATGGAGTTGTTTGTTCTTCCTCCACCGGCGCGGAGAAGGGAGCATC
GGTCAGGCTTCCCTCGGTCATTCATCGTGGAAGCGCTGGGGTCGAGCCCC
ATGACTTTCTTTGCAGTAAGGGCTAGGATTATCGGATGGTGGCCTCAGGA
TTTGAGGAAGTTCTGCACCCACGTTGAAGGGCAGTGGATTTACATTTTCA
CCTTGAGACTGCAGGATACGAGTGGGGAAATGGACGTGGTGGTGAATAAT
GAGGTAGGGGAGTGGTTTTTTTCGAAAAGGGAGGGGACGGTGCGGGCTTG
GAACATGGAGGAAGAAGGAAAAGAGGGCAGAGCGAAGCTGAAAGCGATGG
GGGAAATATTGGAAGAGTACAAGAGACAGGTTAGCTTTGATTTTGTGGTC
AAGTCTTACTTGGTAGGCAGCGCTGGAGAAGAGGGAGGAAGAGGAGGAGG
GAGGGGGATGAAGAGATTTCGGTTGTTGCAGCCGAATGATTATAAGACAT
AA
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Coding sequence (CDS) from alignment at chr17:306811..307662+

>NO17G00950.1 ID=NO17G00950.1|Name=NO17G00950.1|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at chr17:306811..307662+ (Nannochloropsis oceanica)
ATGTACTCTGAGGATCTGCCCTCAGCGGTGGGGTTTCAGGAGGGTGTGAG
GAGGCATGGATGTTGGATAGTGGTGAGGGTGGCTGAGGAGCATAAGTGGA
GGCTTGCACAGTTGAACCTGCCTGTTGGGGGTTGGGTTAGGATGAAAGGG
CTAACGATTGCCCCTTTTGGGATGGGGAAGGGGGGCGGGAGGGGAGAAGG
GGAGGAGCTATGGGCAGGATTGAATGCAAGTGTGAACCCGATGCCGGAAG
AGGGCCTGGAGGTGCATAGGGTGGCAGTACGGTTGCTGTACCGGCTGCGG
GAGGAGCAGCATAGAGCGTCAGTGGCCGTGAGGGAGGGGAAGACAGCGCC
TTGCATGGAGTTGTTTGTTCTTCCTCCACCGGCGCGGAGAAGGGAGCATC
GGTCAGGCTTCCCTCGGTCATTCATCGTGGAAGCGCTGGGGTCGAGCCCC
ATGACTTTCTTTGCAGTAAGGGCTAGGATTATCGGATGGTGGCCTCAGGA
TTTGAGGAAGTTCTGCACCCACGTTGAAGGGCAGTGGATTTACATTTTCA
CCTTGAGACTGCAGGATACGAGTGGGGAAATGGACGTGGTGGTGAATAAT
GAGGTAGGGGAGTGGTTTTTTTCGAAAAGGGAGGGGACGGTGCGGGCTTG
GAACATGGAGGAAGAAGGAAAAGAGGGCAGAGCGAAGCTGAAAGCGATGG
GGGAAATATTGGAAGAGTACAAGAGACAGGTTAGCTTTGATTTTGTGGTC
AAGTCTTACTTGGTAGGCAGCGCTGGAGAAGAGGGAGGAAGAGGAGGAGG
GAGGGGGATGAAGAGATTTCGGTTGTTGCAGCCGAATGATTATAAGACAT
AA
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Synonyms
Publications