NO17G00830, NO17G00830 (gene) Nannochloropsis oceanica

Overview
NameNO17G00830
Unique NameNO17G00830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4943
Alignment locationchr17:275200..280142 -

Link to JBrowse

Properties
Property NameValue
DescriptionF-box domain, cyclin-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:275200..280142 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
Homology
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BLAST of NO17G00830 vs. NCBI_GenBank
Match: EWM21147.1 (F-box domain, cyclin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 268.1 bits (684), Expect = 5.000e-68
Identity = 152/356 (42.70%), Postives = 205/356 (57.58%), Query Frame = 0 
Query:  122 SKTTFNDDLWIHALSFLSYPEITHRVRLVSTGWNAISRTNEIWGPFCAARWAWIVTIPPPPSSCSVEADEK---PNQTQ------LQQQRPQHYYTLYTQRAWARYRIRHPPPARPFTDFDLAVNFRAHKSSSTGKSVVLYAGRGRFD-DNFPVNLFEFSGWTLQPELVVQNKELVFSNLSQAMTFFGPQGPCELDFTVIDRQNGRVAELASVIRAGST--WSGATA------CSLGWDVSSTPQEEELWVIIVPEAVFLEGNLRVLRGVTMGVERVVG-------DGXXXXXXXXXXXXXXXXEEE-----GMVRCRVKSAWLCDHQHLNSVVNPGASELGRLEVARMFEQLQWV 448
            +K+  N+DLWIH L+FL   ++      VS  WN +++ NEIW  FC  RW W+              + +   P  T          + P   Y LY QRA AR+R+ +PPP R FTDFDLAV+ R+  ++      V+Y+ RG  D D   V+LF FSGW +  ++V  ++EL+F NLS AM FFG QGPCELDFTVIDR NG+VAELA+V R G++  ++G T+      CSLGW+V     EEELWV +VP+AVF+EGNLR++RG+T+ VE+VVG       DG                 +       +VRCRV   W+CDHQ+LN      A  +  LEVAR+F++L WV
Sbjct:   80 TKSLLNEDLWIHVLAFLPLVDVVKGTLEVSRSWNVMAKQNEIWKLFCDKRWPWMALAETQDVGEGGTGEARWTNPCATSGSCGRGAAFREPGTLYRLYNQRACARHRVCYPPPLRKFTDFDLAVDLRSRLTNQ-----VIYSCRGMLDEDGLGVDLFTFSGWVMTTDVVAVDEELLFENLSAAMAFFGEQGPCELDFTVIDRVNGKVAELATVSRFGTSDGYTGRTSARATTRCSLGWNVEGQRTEEELWVFLVPDAVFVEGNLRLMRGLTVKVEKVVGYVGARERDGSGENAQTSQGRKGEESRDREKKTIELVRCRVIEVWMCDHQYLN------AQNMVSLEVARIFDELHWV 424
The following BLAST results are available for this feature:
BLAST of NO17G00830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21147.15.000e-6842.70F-box domain, cyclin-like protein [Nannochloropsis... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004805NSK004805Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00830.2NO17G00830.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G00830.1NO17G00830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100319g2gene9281Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00830.2NO17G00830.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G00830.1NO17G00830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00830 ID=NO17G00830|Name=NO17G00830|organism=Nannochloropsis oceanica|type=gene|length=4943bp
TAAATCCTTTGATATAGCCAAAGCAAGAGCCTCTCAGAAAAAGAGAGAGA
GAAGAAGGGAGGGAGGGAGGGAGGGAGGGAGgtgcttacctcgcgatgtt
ttcttgcacttccgggtcttcatgcgtgagccatccctggaggaaaggca
gggaaagatcggtctcggcgagacgggaaaggagggcgggagggaggaag
ggcgggaggagggagagaagggaggaggcggagcggtagaggaggaggcg
gcgagggccttgcttggcctggaggggatcgccgagcccgtgagtgcgga
gccaggctaggaggggagggagggagggattgagggaggaagggttaccg
gatgcagttgtagcgagggtggtgaggagggagaggtagaggaagtggag
ggagcgggcctggcccttgacctccatcctgaagagggaaaatttctcca
cgttatgatctgtggagaggagggcggaaagcagggtagggaacggagga
ggcatccctccccccttccctccccccctcctcctccttctcctactgct
gctgctgctgccgctgctgctgctgccatcacatccgtggcctcgaggta
cgccgggacttcatcttcttctcccgcgcgggtggtggggagaaacggca
cattcaaaccagcagttgcagcctttcgaaccgattggaccgggtcgtcc
agtaggtagagacagaggcaacggggaagagagagggagggaggaagggc
ggtgatggaccattcaaccgcagcgaggcgggcgcggggttgcgggtgga
aggcggcttgagataggaggggcaagaactgagacatctcgaggggcggg
cgaccgagcttttgttgtgctggaaggtaagctgttcgaagggcacctat
ggattacaggaaggaaagaagtgatgcatgtagatcaaacgtgaatgact
tactgattaattaatgactaaaatgaaataaataacataaaataaacata
gaaaatggacgcacctagagcttcagcgacctttatcgcctgcaccggcc
cctcggatgcaagggcctcgaacaagagccgcagcaacagcgggtcgctg
aacaacagctgcggctgtgcttgcacctgcgctgctgccacacacggccc
aggttcccctaccctccctccctcctcgtcctctcccccctcctcctcct
gctgctgctgctgctgctgctgcacatgccgcagatgcacggcccctccc
cccattctatgcgccaatgccgccagagtctcataacatccctccctcaa
caccacctccctgtccaacgccgacccctcccgccctctctccggccctc
tccctcctcccccaatccctcgctgcaacaacagggattgataacaccct
accaggactttcttcaccgccgccaggagcagaggccccgccaaggcaaa
cggagaaggaggacaacgcacggccacaaatgccgccaaacgtgccccca
aagctcgtatcgctataccctcctcatgccgcgacgaggaggaggaggag
gaggaggaggaggaggaggaggaggaggaaggggttaagactgtcagggc
agctttgaggcagaggcccgtctcctctaccagagcctccgggacctcgc
gcatgccccactctaacagtttgatcctcatggggtccgaaatgagggtg
cgagggagggcgggagggagggatggtccaccgaggaagaggcgaagcaa
gcggtcggccagttccttgtcgagggaccgacgaagggaggaagggaggg
aagatttgttggtggcccgggcgtcagtttctaatttgacgagggattca
gctttttccttgacgcgggtttcgctgtcggtggcggcgataaggaggag
ggggagggaggcggggtaggtgaagaggggggagtggaggaggcggagga
cgtgcagtttgagtttgctgagggttgattgggcggaggaggcagaggag
gaggacagagaggaccaaagggacgggtgggatgagagacggagaagagc
gtcgtgggagagaccgtggatggggatgaggggagggggggagggggagg
aggagggagggagggagggagggagAAGGCGGGAGGCGTTGGGGATGAGG
AGGATGTCGAGGAAGAGCTCCAGGAGGAAGGCTAGGTCTTTGGGGGAAGG
TGAGGGAGGAGAAGGAGGAAGGTTTTCAACGTCCATGCTGTTACCGCTTC
CAGCAGCGGTAGCAGTGGCAGCAGTAGTAGTAGCTGTGGCAGCAGTAATG
ACTTGATGCGCGACCAGCGTGGTTGGAGGAGGCTGAATAAACTCAAGCAC
CTCCAACAATCTATGCACCAATGCTACCTGCTGCCGTCCGTAATGCCGGT
CTTTCTCCGACGTGCCCTCTGCTGCCAAGCCCAATAACAATGCCTGGCCC
AACTCACTTTTTCCCTGCGGGGGCAACCGAGGGCAGCCTATCTCCAGGAA
AACCAACGCAAAATTCCTGGTGAAAGCTCCCGCAGTCGGTGCCCTTGCTT
TTATGAGGAGAATATCACAGGGTACTTGCAATTTGCTGTCGGCACGCAAG
CGCTTGATGAGGTGAGAGCAGCATTCCACTACCTTGTTCCGGACCGTGTC
ATCGGTCGTGGTGCTTAGCATATCAAGGAGATGGGGTAAATGAAAATAGA
TGAGGGACTCAATACGGCTTTCTTCGGCCATGACGAGGCGAAAAAGGAGC
TTGTCCAGGCCCTCCCTCGTCGAGGGCAGAGCTGACACAGCCATGGTGAT
TGGTGCCGGCCAGGGGGGGGTGCGAGTCGTCGTTGCTTGGTGCGTACAAG
GTGCAAGTCTGTGGGAGTTACGCGTGTGAGGGCCAAAAGAAGAAAAAAGC
GTGCGATGGCTTCCTTTCTGTGAAGGTGCATAACGTTGACGGGTGTTTCT
GATGAGTCTGAAGGCAATGGTGTAAAATTGTAAAAAAAAGTATATGTATA
GGCCTCGGGGAAGAAGGGAAGGGAGGGAAGGCTGAAGAAGTCGGCGAGAG
ATCATCCCTCATGGACGCCTGACACTATCGCGCGCCAGCATAATCCCCAT
CACCTGTACAGAGCCTTCCATTTCCCCTCTTTCTCCTGTTGCAGCTGCTC
GAAGGGCAGTGGTGGCTGGAGCTGCGGCGGCGCTTTTGTTTTCACAAACA
AATATGTCCTCCGGGTCTCATGGACTCTCTCCCCCATGCCCCCTCCTTTC
AACACAGCCAGAAATACTTTTTAAACCCAGACCTCATGTTTCTGCCCGCC
TTCTTCATGCGACGGTCGGCTCGATTAGAAGGCAGCAATCAGACACAGGA
AGCGCCGCCCACATCAGGCACACCAGCACGGGCACCATCAGCAGCAGCGG
CGGCATACCCTCCACCACCACCACCTGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGTCGCAGCAGCGATGCCAGAGCATACATCACACCA
TTCCATCGCTCCCATGCTACCTTATTCCTCCTCCTCCTCCACGTCTGCAC
CACGGTCAGCTCCCTCCTACACCTTCACTACTTCCAAGACTACCTTCAAC
GATGATCTGTGGATCCACGCCCTCTCCTTCTTGTCCTACCCCGAAATAAC
ACACCGAGTGCGGCTCGTTTCCACAGGCTGGAATGCCATATCGAGGACAA
ATGAGATCTGGGGACCTTTCTGCGCGGCACGATGGGCATGGATAGTAACG
ATCCCTCCACCCCCCTCATCCTGTTCTGTAGAAGCAGACGAGAAGCCAAA
CCAAACTCAGCTGCAGCAGCAACGACCGCAGCACTACTACACACTCTATA
CACAGCGCGCCTGGGCCCGTTATCGGATCCGTCATCCCCCTCCGGCCCGC
CCCTTCACTGATTTCGACCTTGCTGTTAATTTTCGGGCTCACAAGAGCAG
CAGCACCGGCAAGTCGGTAGTACTGTACGCGGGCCGGGGGCGCTTCGACG
ATAATTTCCCTGTAAATTTGTTTGAATTTTCAGGGTGGACGTTGCAACCG
GAGCTGGTTGTACAGAACAAGGAGCTCGTGTTTTCGAATCTGAGTCAAGg
tacgaaatcctcataaggcatgtgccttcctccccattctgcgatctccc
tttcccgcgaccagcaacctcactcctctcttcccctccattatcctttt
ttctttgcagCTATGACCTTTTTCGGTCCGCAAGGCCCTTGCGAGCTCGA
CTTTACAGTCATTGATCGGCAGAATGGAAGAGTGGCCGAGCTTGCCTCTG
TCATACGCGCGGGCTCGACGTGGAGCGGGGCGACTGCCTGCTCGTTGGGA
TGGGATGTGAGCTCAACACCACAGGAGGAAGAGTTATGGGTGATTATCGT
GCCGGAAGCGGTGTTTTTGGAAGGGAATTTGAGGGTACTGCGGGGCGTGA
CGATGGGAGTGGAGAGAGTAGTAGGAGATGGGAATGGAGGGAGAAAGGGA
GGGAGGGGGGCTGGGGAGGGGGGGGGAGAAGAAGAGGAAGGGATGGTACG
ATGCCGGGTGAAGAGTGCCTGGCTTTGTGACCATCAACATTTGAACTCGG
TGGTGAACCCGGGGGCGAGCGAGCTCGGCCGATTGGAAGTCGCACGGATG
TTTGAGCAGCTGCAGTGGGTGTGAGGTGTGAGGGGCGAGGAGGATAGGGG
AACAGGGAGGAGGGAGAGGAGATAAGTTACGTAAAAATGAAAGCGCACAG
TGAAGACGAATACAGTCGCCCATGTAAATACCTGGTGCATGCACATATTT
TGAGAGGCCAATGGTAGGGCTTGCGAGGGGGCCAGCTGCACCTCAATTTA
ATGTAGCACACGCCATGACCAATGAGATAAATTTGGCACACACAAAGATC
AACGAAATTCAACAAAGAAATAACCTTAGTCGCCACCGTCCAC
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protein sequence of NO17G00830.2

>NO17G00830.2-protein ID=NO17G00830.2-protein|Name=NO17G00830.2|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MDSLPHAPSFQHSQKYFLNPDLMFLPAFFMRRSARLEGSNQTQEAPPTSG
TPARAPSAAAAAYPPPPPPAAAAAAAAAAAAAVAAAMPEHTSHHSIAPML
PYSSSSSTSAPRSAPSYTFTTSKTTFNDDLWIHALSFLSYPEITHRVRLV
STGWNAISRTNEIWGPFCAARWAWIVTIPPPPSSCSVEADEKPNQTQLQQ
QRPQHYYTLYTQRAWARYRIRHPPPARPFTDFDLAVNFRAHKSSSTGKSV
VLYAGRGRFDDNFPVNLFEFSGWTLQPELVVQNKELVFSNLSQGTKSS*
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protein sequence of NO17G00830.1

>NO17G00830.1-protein ID=NO17G00830.1-protein|Name=NO17G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MDSLPHAPSFQHSQKYFLNPDLMFLPAFFMRRSARLEGSNQTQEAPPTSG
TPARAPSAAAAAYPPPPPPAAAAAAAAAAAAAVAAAMPEHTSHHSIAPML
PYSSSSSTSAPRSAPSYTFTTSKTTFNDDLWIHALSFLSYPEITHRVRLV
STGWNAISRTNEIWGPFCAARWAWIVTIPPPPSSCSVEADEKPNQTQLQQ
QRPQHYYTLYTQRAWARYRIRHPPPARPFTDFDLAVNFRAHKSSSTGKSV
VLYAGRGRFDDNFPVNLFEFSGWTLQPELVVQNKELVFSNLSQAMTFFGP
QGPCELDFTVIDRQNGRVAELASVIRAGSTWSGATACSLGWDVSSTPQEE
ELWVIIVPEAVFLEGNLRVLRGVTMGVERVVGDGNGGRKGGRGAGEGGGE
EEEGMVRCRVKSAWLCDHQHLNSVVNPGASELGRLEVARMFEQLQWV*
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Synonyms
Publications