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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr17 | genome | chr17:275200..280142 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G00830.2 vs.
Match: EWM21147.1 (F-box domain, cyclin-like protein [Nannochloropsis gaditana]) HSP 1 Score: 109.4 bits (272), Expect = 2.000e-20 Identity = 80/234 (34.19%), Postives = 115/234 (49.15%), Query Frame = 0
Query: 69 PAAAAAAAAAAAAAVAAAMPEHTSHHSIAPMLPYSSSSSTSAPRSAPSYTFTTSKTTFNDDLWIHALSFLSYPEITHRVRLVSTGWNAISRTNEIWGPFCAARWAWIVTIPPPPSSCSVEADEK---PNQTQ------LQQQRPQHYYTLYTQRAWARYRIRHPPPARPFTDFDLAVNFRAHKSSSTGKSVVLYAGRGRFD-DNFPVNLFEFSGWTLQPELVVQNKELVFSNLS 293
PAA A+AA A A ++ +I P +S +P +K+ N+DLWIH L+FL ++ VS WN +++ NEIW FC RW W+ + + P T + P Y LY QRA AR+R+ +PPP R FTDFDLAV+ R+ ++ V+Y+ RG D D V+LF FSGW + ++V ++EL+F NLS
Sbjct: 36 PAAGFPASAAGTTATATERGQNEDS-TITPASAHSDQEIVVSPH--------VTKSLLNEDLWIHVLAFLPLVDVVKGTLEVSRSWNVMAKQNEIWKLFCDKRWPWMALAETQDVGEGGTGEARWTNPCATSGSCGRGAAFREPGTLYRLYNQRACARHRVCYPPPLRKFTDFDLAVDLRSRLTNQ-----VIYSCRGMLDEDGLGVDLFTFSGWVMTTDVVAVDEELLFENLS 255
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G00830.2 ID=NO17G00830.2|Name=NO17G00830.2|organism=Nannochloropsis oceanica|type=mRNA|length=2899bp
TAAATCCTTTGATATAGCCAAAGCAAGAGCCTCTCAGAAAAAGAGAGAGA
GAAGAAGGGAGGGAGGGAGGGAGGGAGGGAGAAGGCGGGAGGCGTTGGGG
ATGAGGAGGATGTCGAGGAAGAGCTCCAGGAGGAAGGCTAGGTCTTTGGG
GGAAGGTGAGGGAGGAGAAGGAGGAAGGTTTTCAACGTCCATGCTGTTAC
CGCTTCCAGCAGCGGTAGCAGTGGCAGCAGTAGTAGTAGCTGTGGCAGCA
GTAATGACTTGATGCGCGACCAGCGTGGTTGGAGGAGGCTGAATAAACTC
AAGCACCTCCAACAATCTATGCACCAATGCTACCTGCTGCCGTCCGTAAT
GCCGGTCTTTCTCCGACGTGCCCTCTGCTGCCAAGCCCAATAACAATGCC
TGGCCCAACTCACTTTTTCCCTGCGGGGGCAACCGAGGGCAGCCTATCTC
CAGGAAAACCAACGCAAAATTCCTGGTGAAAGCTCCCGCAGTCGGTGCCC
TTGCTTTTATGAGGAGAATATCACAGGGTACTTGCAATTTGCTGTCGGCA
CGCAAGCGCTTGATGAGGTGAGAGCAGCATTCCACTACCTTGTTCCGGAC
CGTGTCATCGGTCGTGGTGCTTAGCATATCAAGGAGATGGGGTAAATGAA
AATAGATGAGGGACTCAATACGGCTTTCTTCGGCCATGACGAGGCGAAAA
AGGAGCTTGTCCAGGCCCTCCCTCGTCGAGGGCAGAGCTGACACAGCCAT
GGTGATTGGTGCCGGCCAGGGGGGGGTGCGAGTCGTCGTTGCTTGGTGCG
TACAAGGTGCAAGTCTGTGGGAGTTACGCGTGTGAGGGCCAAAAGAAGAA
AAAAGCGTGCGATGGCTTCCTTTCTGTGAAGGTGCATAACGTTGACGGGT
GTTTCTGATGAGTCTGAAGGCAATGGTGTAAAATTGTAAAAAAAAGTATA
TGTATAGGCCTCGGGGAAGAAGGGAAGGGAGGGAAGGCTGAAGAAGTCGG
CGAGAGATCATCCCTCATGGACGCCTGACACTATCGCGCGCCAGCATAAT
CCCCATCACCTGTACAGAGCCTTCCATTTCCCCTCTTTCTCCTGTTGCAG
CTGCTCGAAGGGCAGTGGTGGCTGGAGCTGCGGCGGCGCTTTTGTTTTCA
CAAACAAATATGTCCTCCGGGTCTCATGGACTCTCTCCCCCATGCCCCCT
CCTTTCAACACAGCCAGAAATACTTTTTAAACCCAGACCTCATGTTTCTG
CCCGCCTTCTTCATGCGACGGTCGGCTCGATTAGAAGGCAGCAATCAGAC
ACAGGAAGCGCCGCCCACATCAGGCACACCAGCACGGGCACCATCAGCAG
CAGCGGCGGCATACCCTCCACCACCACCACCTGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGTCGCAGCAGCGATGCCAGAGCATACATC
ACACCATTCCATCGCTCCCATGCTACCTTATTCCTCCTCCTCCTCCACGT
CTGCACCACGGTCAGCTCCCTCCTACACCTTCACTACTTCCAAGACTACC
TTCAACGATGATCTGTGGATCCACGCCCTCTCCTTCTTGTCCTACCCCGA
AATAACACACCGAGTGCGGCTCGTTTCCACAGGCTGGAATGCCATATCGA
GGACAAATGAGATCTGGGGACCTTTCTGCGCGGCACGATGGGCATGGATA
GTAACGATCCCTCCACCCCCCTCATCCTGTTCTGTAGAAGCAGACGAGAA
GCCAAACCAAACTCAGCTGCAGCAGCAACGACCGCAGCACTACTACACAC
TCTATACACAGCGCGCCTGGGCCCGTTATCGGATCCGTCATCCCCCTCCG
GCCCGCCCCTTCACTGATTTCGACCTTGCTGTTAATTTTCGGGCTCACAA
GAGCAGCAGCACCGGCAAGTCGGTAGTACTGTACGCGGGCCGGGGGCGCT
TCGACGATAATTTCCCTGTAAATTTGTTTGAATTTTCAGGGTGGACGTTG
CAACCGGAGCTGGTTGTACAGAACAAGGAGCTCGTGTTTTCGAATCTGAG
TCAAGGTACGAAATCCTCATAAGGCATGTGCCTTCCTCCCCATTCTGCGA
TCTCCCTTTCCCGCGACCAGCAACCTCACTCCTCTCTTCCCCTCCATTAT
CCTTTTTTCTTTGCAGCTATGACCTTTTTCGGTCCGCAAGGCCCTTGCGA
GCTCGACTTTACAGTCATTGATCGGCAGAATGGAAGAGTGGCCGAGCTTG
CCTCTGTCATACGCGCGGGCTCGACGTGGAGCGGGGCGACTGCCTGCTCG
TTGGGATGGGATGTGAGCTCAACACCACAGGAGGAAGAGTTATGGGTGAT
TATCGTGCCGGAAGCGGTGTTTTTGGAAGGGAATTTGAGGGTACTGCGGG
GCGTGACGATGGGAGTGGAGAGAGTAGTAGGAGATGGGAATGGAGGGAGA
AAGGGAGGGAGGGGGGCTGGGGAGGGGGGGGGAGAAGAAGAGGAAGGGAT
GGTACGATGCCGGGTGAAGAGTGCCTGGCTTTGTGACCATCAACATTTGA
ACTCGGTGGTGAACCCGGGGGCGAGCGAGCTCGGCCGATTGGAAGTCGCA
CGGATGTTTGAGCAGCTGCAGTGGGTGTGAGGTGTGAGGGGCGAGGAGGA
TAGGGGAACAGGGAGGAGGGAGAGGAGATAAGTTACGTAAAAATGAAAGC
GCACAGTGAAGACGAATACAGTCGCCCATGTAAATACCTGGTGCATGCAC
ATATTTTGAGAGGCCAATGGTAGGGCTTGCGAGGGGGCCAGCTGCACCTC
AATTTAATGTAGCACACGCCATGACCAATGAGATAAATTTGGCACACACA
AAGATCAACGAAATTCAACAAAGAAATAACCTTAGTCGCCACCGTCCAC back to topprotein sequence of NO17G00830.2 >NO17G00830.2-protein ID=NO17G00830.2-protein|Name=NO17G00830.2|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MDSLPHAPSFQHSQKYFLNPDLMFLPAFFMRRSARLEGSNQTQEAPPTSG
TPARAPSAAAAAYPPPPPPAAAAAAAAAAAAAVAAAMPEHTSHHSIAPML
PYSSSSSTSAPRSAPSYTFTTSKTTFNDDLWIHALSFLSYPEITHRVRLV
STGWNAISRTNEIWGPFCAARWAWIVTIPPPPSSCSVEADEKPNQTQLQQ
QRPQHYYTLYTQRAWARYRIRHPPPARPFTDFDLAVNFRAHKSSSTGKSV
VLYAGRGRFDDNFPVNLFEFSGWTLQPELVVQNKELVFSNLSQGTKSS* back to topmRNA from alignment at chr17:275200..280142- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G00830.2 ID=NO17G00830.2|Name=NO17G00830.2|organism=Nannochloropsis oceanica|type=mRNA|length=4943bp|location=Sequence derived from alignment at chr17:275200..280142- (Nannochloropsis oceanica)
TAAATCCTTTGATATAGCCAAAGCAAGAGCCTCTCAGAAAAAGAGAGAGA
GAAGAAGGGAGGGAGGGAGGGAGGGAGGGAGGTGCTTACCTCGCGATGTT
TTCTTGCACTTCCGGGTCTTCATGCGTGAGCCATCCCTGGAGGAAAGGCA
GGGAAAGATCGGTCTCGGCGAGACGGGAAAGGAGGGCGGGAGGGAGGAAG
GGCGGGAGGAGGGAGAGAAGGGAGGAGGCGGAGCGGTAGAGGAGGAGGCG
GCGAGGGCCTTGCTTGGCCTGGAGGGGATCGCCGAGCCCGTGAGTGCGGA
GCCAGGCTAGGAGGGGAGGGAGGGAGGGATTGAGGGAGGAAGGGTTACCG
GATGCAGTTGTAGCGAGGGTGGTGAGGAGGGAGAGGTAGAGGAAGTGGAG
GGAGCGGGCCTGGCCCTTGACCTCCATCCTGAAGAGGGAAAATTTCTCCA
CGTTATGATCTGTGGAGAGGAGGGCGGAAAGCAGGGTAGGGAACGGAGGA
GGCATCCCTCCCCCCTTCCCTCCCCCCCTCCTCCTCCTTCTCCTACTGCT
GCTGCTGCTGCCGCTGCTGCTGCTGCCATCACATCCGTGGCCTCGAGGTA
CGCCGGGACTTCATCTTCTTCTCCCGCGCGGGTGGTGGGGAGAAACGGCA
CATTCAAACCAGCAGTTGCAGCCTTTCGAACCGATTGGACCGGGTCGTCC
AGTAGGTAGAGACAGAGGCAACGGGGAAGAGAGAGGGAGGGAGGAAGGGC
GGTGATGGACCATTCAACCGCAGCGAGGCGGGCGCGGGGTTGCGGGTGGA
AGGCGGCTTGAGATAGGAGGGGCAAGAACTGAGACATCTCGAGGGGCGGG
CGACCGAGCTTTTGTTGTGCTGGAAGGTAAGCTGTTCGAAGGGCACCTAT
GGATTACAGGAAGGAAAGAAGTGATGCATGTAGATCAAACGTGAATGACT
TACTGATTAATTAATGACTAAAATGAAATAAATAACATAAAATAAACATA
GAAAATGGACGCACCTAGAGCTTCAGCGACCTTTATCGCCTGCACCGGCC
CCTCGGATGCAAGGGCCTCGAACAAGAGCCGCAGCAACAGCGGGTCGCTG
AACAACAGCTGCGGCTGTGCTTGCACCTGCGCTGCTGCCACACACGGCCC
AGGTTCCCCTACCCTCCCTCCCTCCTCGTCCTCTCCCCCCTCCTCCTCCT
GCTGCTGCTGCTGCTGCTGCTGCACATGCCGCAGATGCACGGCCCCTCCC
CCCATTCTATGCGCCAATGCCGCCAGAGTCTCATAACATCCCTCCCTCAA
CACCACCTCCCTGTCCAACGCCGACCCCTCCCGCCCTCTCTCCGGCCCTC
TCCCTCCTCCCCCAATCCCTCGCTGCAACAACAGGGATTGATAACACCCT
ACCAGGACTTTCTTCACCGCCGCCAGGAGCAGAGGCCCCGCCAAGGCAAA
CGGAGAAGGAGGACAACGCACGGCCACAAATGCCGCCAAACGTGCCCCCA
AAGCTCGTATCGCTATACCCTCCTCATGCCGCGACGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGGTTAAGACTGTCAGGGC
AGCTTTGAGGCAGAGGCCCGTCTCCTCTACCAGAGCCTCCGGGACCTCGC
GCATGCCCCACTCTAACAGTTTGATCCTCATGGGGTCCGAAATGAGGGTG
CGAGGGAGGGCGGGAGGGAGGGATGGTCCACCGAGGAAGAGGCGAAGCAA
GCGGTCGGCCAGTTCCTTGTCGAGGGACCGACGAAGGGAGGAAGGGAGGG
AAGATTTGTTGGTGGCCCGGGCGTCAGTTTCTAATTTGACGAGGGATTCA
GCTTTTTCCTTGACGCGGGTTTCGCTGTCGGTGGCGGCGATAAGGAGGAG
GGGGAGGGAGGCGGGGTAGGTGAAGAGGGGGGAGTGGAGGAGGCGGAGGA
CGTGCAGTTTGAGTTTGCTGAGGGTTGATTGGGCGGAGGAGGCAGAGGAG
GAGGACAGAGAGGACCAAAGGGACGGGTGGGATGAGAGACGGAGAAGAGC
GTCGTGGGAGAGACCGTGGATGGGGATGAGGGGAGGGGGGGAGGGGGAGG
AGGAGGGAGGGAGGGAGGGAGGGAGAAGGCGGGAGGCGTTGGGGATGAGG
AGGATGTCGAGGAAGAGCTCCAGGAGGAAGGCTAGGTCTTTGGGGGAAGG
TGAGGGAGGAGAAGGAGGAAGGTTTTCAACGTCCATGCTGTTACCGCTTC
CAGCAGCGGTAGCAGTGGCAGCAGTAGTAGTAGCTGTGGCAGCAGTAATG
ACTTGATGCGCGACCAGCGTGGTTGGAGGAGGCTGAATAAACTCAAGCAC
CTCCAACAATCTATGCACCAATGCTACCTGCTGCCGTCCGTAATGCCGGT
CTTTCTCCGACGTGCCCTCTGCTGCCAAGCCCAATAACAATGCCTGGCCC
AACTCACTTTTTCCCTGCGGGGGCAACCGAGGGCAGCCTATCTCCAGGAA
AACCAACGCAAAATTCCTGGTGAAAGCTCCCGCAGTCGGTGCCCTTGCTT
TTATGAGGAGAATATCACAGGGTACTTGCAATTTGCTGTCGGCACGCAAG
CGCTTGATGAGGTGAGAGCAGCATTCCACTACCTTGTTCCGGACCGTGTC
ATCGGTCGTGGTGCTTAGCATATCAAGGAGATGGGGTAAATGAAAATAGA
TGAGGGACTCAATACGGCTTTCTTCGGCCATGACGAGGCGAAAAAGGAGC
TTGTCCAGGCCCTCCCTCGTCGAGGGCAGAGCTGACACAGCCATGGTGAT
TGGTGCCGGCCAGGGGGGGGTGCGAGTCGTCGTTGCTTGGTGCGTACAAG
GTGCAAGTCTGTGGGAGTTACGCGTGTGAGGGCCAAAAGAAGAAAAAAGC
GTGCGATGGCTTCCTTTCTGTGAAGGTGCATAACGTTGACGGGTGTTTCT
GATGAGTCTGAAGGCAATGGTGTAAAATTGTAAAAAAAAGTATATGTATA
GGCCTCGGGGAAGAAGGGAAGGGAGGGAAGGCTGAAGAAGTCGGCGAGAG
ATCATCCCTCATGGACGCCTGACACTATCGCGCGCCAGCATAATCCCCAT
CACCTGTACAGAGCCTTCCATTTCCCCTCTTTCTCCTGTTGCAGCTGCTC
GAAGGGCAGTGGTGGCTGGAGCTGCGGCGGCGCTTTTGTTTTCACAAACA
AATATGTCCTCCGGGTCTCATGGACTCTCTCCCCCATGCCCCCTCCTTTC
AACACAGCCAGAAATACTTTTTAAACCCAGACCTCATGTTTCTGCCCGCC
TTCTTCATGCGACGGTCGGCTCGATTAGAAGGCAGCAATCAGACACAGGA
AGCGCCGCCCACATCAGGCACACCAGCACGGGCACCATCAGCAGCAGCGG
CGGCATACCCTCCACCACCACCACCTGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGTCGCAGCAGCGATGCCAGAGCATACATCACACCA
TTCCATCGCTCCCATGCTACCTTATTCCTCCTCCTCCTCCACGTCTGCAC
CACGGTCAGCTCCCTCCTACACCTTCACTACTTCCAAGACTACCTTCAAC
GATGATCTGTGGATCCACGCCCTCTCCTTCTTGTCCTACCCCGAAATAAC
ACACCGAGTGCGGCTCGTTTCCACAGGCTGGAATGCCATATCGAGGACAA
ATGAGATCTGGGGACCTTTCTGCGCGGCACGATGGGCATGGATAGTAACG
ATCCCTCCACCCCCCTCATCCTGTTCTGTAGAAGCAGACGAGAAGCCAAA
CCAAACTCAGCTGCAGCAGCAACGACCGCAGCACTACTACACACTCTATA
CACAGCGCGCCTGGGCCCGTTATCGGATCCGTCATCCCCCTCCGGCCCGC
CCCTTCACTGATTTCGACCTTGCTGTTAATTTTCGGGCTCACAAGAGCAG
CAGCACCGGCAAGTCGGTAGTACTGTACGCGGGCCGGGGGCGCTTCGACG
ATAATTTCCCTGTAAATTTGTTTGAATTTTCAGGGTGGACGTTGCAACCG
GAGCTGGTTGTACAGAACAAGGAGCTCGTGTTTTCGAATCTGAGTCAAGG
TACGAAATCCTCATAAGGCATGTGCCTTCCTCCCCATTCTGCGATCTCCC
TTTCCCGCGACCAGCAACCTCACTCCTCTCTTCCCCTCCATTATCCTTTT
TTCTTTGCAGCTATGACCTTTTTCGGTCCGCAAGGCCCTTGCGAGCTCGA
CTTTACAGTCATTGATCGGCAGAATGGAAGAGTGGCCGAGCTTGCCTCTG
TCATACGCGCGGGCTCGACGTGGAGCGGGGCGACTGCCTGCTCGTTGGGA
TGGGATGTGAGCTCAACACCACAGGAGGAAGAGTTATGGGTGATTATCGT
GCCGGAAGCGGTGTTTTTGGAAGGGAATTTGAGGGTACTGCGGGGCGTGA
CGATGGGAGTGGAGAGAGTAGTAGGAGATGGGAATGGAGGGAGAAAGGGA
GGGAGGGGGGCTGGGGAGGGGGGGGGAGAAGAAGAGGAAGGGATGGTACG
ATGCCGGGTGAAGAGTGCCTGGCTTTGTGACCATCAACATTTGAACTCGG
TGGTGAACCCGGGGGCGAGCGAGCTCGGCCGATTGGAAGTCGCACGGATG
TTTGAGCAGCTGCAGTGGGTGTGAGGTGTGAGGGGCGAGGAGGATAGGGG
AACAGGGAGGAGGGAGAGGAGATAAGTTACGTAAAAATGAAAGCGCACAG
TGAAGACGAATACAGTCGCCCATGTAAATACCTGGTGCATGCACATATTT
TGAGAGGCCAATGGTAGGGCTTGCGAGGGGGCCAGCTGCACCTCAATTTA
ATGTAGCACACGCCATGACCAATGAGATAAATTTGGCACACACAAAGATC
AACGAAATTCAACAAAGAAATAACCTTAGTCGCCACCGTCCAC back to topCoding sequence (CDS) from alignment at chr17:275200..280142- >NO17G00830.2 ID=NO17G00830.2|Name=NO17G00830.2|organism=Nannochloropsis oceanica|type=CDS|length=897bp|location=Sequence derived from alignment at chr17:275200..280142- (Nannochloropsis oceanica)
ATGGACTCTCTCCCCCATGCCCCCTCCTTTCAACACAGCCAGAAATACTT
TTTAAACCCAGACCTCATGTTTCTGCCCGCCTTCTTCATGCGACGGTCGG
CTCGATTAGAAGGCAGCAATCAGACACAGGAAGCGCCGCCCACATCAGGC
ACACCAGCACGGGCACCATCAGCAGCAGCGGCGGCATACCCTCCACCACC
ACCACCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCG
CAGCAGCGATGCCAGAGCATACATCACACCATTCCATCGCTCCCATGCTA
CCTTATTCCTCCTCCTCCTCCACGTCTGCACCACGGTCAGCTCCCTCCTA
CACCTTCACTACTTCCAAGACTACCTTCAACGATGATCTGTGGATCCACG
CCCTCTCCTTCTTGTCCTACCCCGAAATAACACACCGAGTGCGGCTCGTT
TCCACAGGCTGGAATGCCATATCGAGGACAAATGAGATCTGGGGACCTTT
CTGCGCGGCACGATGGGCATGGATAGTAACGATCCCTCCACCCCCCTCAT
CCTGTTCTGTAGAAGCAGACGAGAAGCCAAACCAAACTCAGCTGCAGCAG
CAACGACCGCAGCACTACTACACACTCTATACACAGCGCGCCTGGGCCCG
TTATCGGATCCGTCATCCCCCTCCGGCCCGCCCCTTCACTGATTTCGACC
TTGCTGTTAATTTTCGGGCTCACAAGAGCAGCAGCACCGGCAAGTCGGTA
GTACTGTACGCGGGCCGGGGGCGCTTCGACGATAATTTCCCTGTAAATTT
GTTTGAATTTTCAGGGTGGACGTTGCAACCGGAGCTGGTTGTACAGAACA
AGGAGCTCGTGTTTTCGAATCTGAGTCAAGGTACGAAATCCTCATAA back to top
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