NO17G00770, NO17G00770 (gene) Nannochloropsis oceanica

Overview
NameNO17G00770
Unique NameNO17G00770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2348
Alignment locationchr17:264104..266451 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:264104..266451 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO17G00770 vs. NCBI_GenBank
Match: EWM21150.1 (hypothetical protein Naga_100319g8 [Nannochloropsis gaditana])

HSP 1 Score: 183.0 bits (463), Expect = 8.000e-43
Identity = 94/151 (62.25%), Postives = 114/151 (75.50%), Query Frame = 0 
Query:    1 MVSRFIRPIFSWSQDAFRVAPLALAASARGSLMAALGGAFQRQHPQQQHSLQSAHMHQQQRHRWAGTAEFNGSEQAAMEFLNDGAQFEGLAKRWSARKYYIKPFVQRKQRYNRWVRRRSLEKINHILNKVRYEKGIAKSANPQLAAIFSGK 152
            M+SRF+RP+ SW++DA R+     A SAR ++  A  G       ++ HSL   H  QQ+RHRWAG AEF+GS+QAAM+FL++GAQFEGL KRW ARKYYIKPFVQRKQRYNRWVRRRS+EKIN IL +VRYEK  A+S NP+LAAI   K
Sbjct:   12 MMSRFVRPMLSWNRDAVRLTAYTFAVSARAAITTAFSGPCAAAGDREHHSL-LVHWQQQRRHRWAGVAEFDGSKQAAMQFLDEGAQFEGLVKRWDARKYYIKPFVQRKQRYNRWVRRRSMEKINRILERVRYEKANARSTNPRLAAILGSK 161
The following BLAST results are available for this feature:
BLAST of NO17G00770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21150.18.000e-4362.25hypothetical protein Naga_100319g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004799NSK004799Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00770.1NO17G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600112gene_7808Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100319g8gene9276Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00770.1NO17G00770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00770 ID=NO17G00770|Name=NO17G00770|organism=Nannochloropsis oceanica|type=gene|length=2348bp
ATCATACATGAATAAGCGTTTTCTTTCTCTTTTCTTCTATCTAGGCTCTC
CTCCTTCAGTCTATATACTGTACATGCCATTTACTGTTTTCACTCCTGTC
ACACTCTTTCCTTGTGCTCCTGCGCTCCAGGCTTCCTGCCCGTGCACACA
AAAGCATCCTCTATCGTCTGCTGCACCTGGCAAATTATCTCATGGGCCCT
CAGCCTCTCCTCCGCCAACACCTTTCGCTGCTGTGCTTGTACCAGCTGTT
CCCTGACTTTGCTGAGCTCTGTCGCCTTGTACCCCACCTCGGCCAGAAGG
GTCACTCGCTGCTGTTCTTGCAGGCGCCGTCCATTTTCGCGTCGGCCTGG
GGAAGGAGAGAGGGAGGGAGGGAGAGAGATAGCCAGGAAAACGATTAAAT
ATTTTCTGTTTAATCCGAGGGGAGGGGGGAGAAGAGGGGGGAAAGATAGC
TTTAAGTAATAGGATACGTTGACGAATACAAAGAAACGCACTCATTACCC
TCAAGGTAAGCAGGTAAACCTAACATCATGAGCATGAGGAGATCGCGTAC
GTGAAAGGTTGTAAGGAGGACAGCAGTGGTCTCATCTCATGGGCTGCAAA
CAAGTAAGCCGTATCTCACGCCCGCCGTGGGAAGAATCAAACCAAGAAGA
CTTCTCAGCTGTAACACAATTGAAGAAAAGGATGTTCATACATTTCCTCT
TCACATGCATGCATAGCCCTACTACCCACCTACTCTTACCTTCGAGCATT
ACCCGGTCCAGCTCGTCCAGCTTGGCTTTGATCCTTGCCATGCCATCGGC
AGCCGCGGCCCCGCCCCCTGGCGCCTGACCACTCAGGCTGCTCCACTTGC
CACCACCGCTTGGAAAATTCAGCATTTAAGCTGGAAAGGTTGTGAGAGTG
GTGCGATAATAAAAGAGTAGGTGTAAGGTCTGCGGGTCCGGGCGATTCGC
TCTCCCTCCGGCTTTTTATTATGCCTCTTCCGCAATAATAGAGTTGGGAA
CACATGCAAGAGGTACACTTGGATAGATCATAAGTCTCTGAATGGTGTTC
AAGAGGCCTCGCGGAGCTCTGTTGGTTCTAGCGGTCACTGTACTGGCGGC
ATCATCATCATCGCCATCATCATCACCATGGATCATCCGGGAGTGGCAAG
GGAAAGTCTTCCACAACATGAGCCTGCCACCTGCACATCCAACCCCAACC
TCTATCCACTCCCACACGACCACAGGTGATCATTCTCTCTCGAGCAGGTC
ACGATGGTTTCGCGGTTCATTCGCCCCATATTCTCCTGGAGCCAGGATGC
TTTCCGAGTCGCCCCGCTAGCCCTCGCTGCTAGTGCCCGTGGGAGTCTCA
TGGCCGCGTTGGGTGGGGCCTTTCAACGACAACACCCGCAGCAGCAGCAC
TCGTTACAGTCAGCGCACATGCACCAACAGCAGCGGCACCGGTGGGCTGG
CACCGCGGAATTCAATGGGAGCGAGCAGGCGgtgagcgctggagatttga
tgggttggcaagggggaaggttagatgtgatgctaagctaaagtaaaaca
gcttcttgatatgcacgcgttcatattcatgcaccaataactacagGCCA
TGGAGTTTTTGAACGATGGGGCACAGTTCGAGGGCTTGGCTAAACGGTGG
AGCGCCCGCAAGgtatgttggatagcaagtaaatttcaaagtctcgtctt
aggcagtcctgcccgcttttccctctgtggagtactttctatagaaaatg
gcgcattaaaaatgacacgcgtgggtgggggggcatcatttcgcatatct
ttcccctgcgtcgatcggccagttccacccgtcctttcctcttccctccc
tcctctcctccctttccctcattctcctccccgtgatcgcagTATTACAT
CAAGCCCTTCGTGCAACGCAAGCAACGCTACAACCGTTGGGTCCGTCGTC
GCTCCCTAGAGAAGATAAATCACATTCTGAATAAAGTGCGCTACGAGAAA
GGAATgtacgtgcaacaatggagggagggatggaggtagggatgaagggc
aagttggatgaatattcacacgtcacgccaactttgctcctttcctttcc
tcgctttgaacagTGCCAAGTCGGCCAACCCGCAGCTGGCCGCCATCTTC
AGCGGCAAGGCAGCAGCACAAGCAGCGGTGGCGGCTGAGGTGGAAGCAAG
TATGATCAGGAAGTAACACCTACGACGGAGAGGAGGGAACGTGTTGGTTG
CAGGAGGACAAATGTGATGACTTTGAGCAAGGGCGAAATGTGCATATAAA
CTTCGCTTGGGCGACTTGAAAAAGAAAGACACACTGAACGAGGAGAGA
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protein sequence of NO17G00770.1

>NO17G00770.1-protein ID=NO17G00770.1-protein|Name=NO17G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MVSRFIRPIFSWSQDAFRVAPLALAASARGSLMAALGGAFQRQHPQQQHS
LQSAHMHQQQRHRWAGTAEFNGSEQAAMEFLNDGAQFEGLAKRWSARKYY
IKPFVQRKQRYNRWVRRRSLEKINHILNKVRYEKGIAKSANPQLAAIFSG
KAAAQAAVAAEVEASMIRK*
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Synonyms
Publications