NO17G00770.1, NO17G00770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00770.1
Unique NameNO17G00770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1895
Alignment locationchr17:264104..266451 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:264104..266451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO17G00770.1 vs.
Match: EWM21150.1 (hypothetical protein Naga_100319g8 [Nannochloropsis gaditana])

HSP 1 Score: 182.6 bits (462), Expect = 1.000e-42
Identity = 94/151 (62.25%), Postives = 114/151 (75.50%), Query Frame = 0 
Query:    1 MVSRFIRPIFSWSQDAFRVAPLALAASARGSLMAALGGAFQRQHPQQQHSLQSAHMHQQQRHRWAGTAEFNGSEQAAMEFLNDGAQFEGLAKRWSARKYYIKPFVQRKQRYNRWVRRRSLEKINHILNKVRYEKGIAKSANPQLAAIFSGK 152
            M+SRF+RP+ SW++DA R+     A SAR ++  A  G       ++ HSL   H  QQ+RHRWAG AEF+GS+QAAM+FL++GAQFEGL KRW ARKYYIKPFVQRKQRYNRWVRRRS+EKIN IL +VRYEK  A+S NP+LAAI   K
Sbjct:   12 MMSRFVRPMLSWNRDAVRLTAYTFAVSARAAITTAFSGPCAAAGDREHHSLL-VHWQQQRRHRWAGVAEFDGSKQAAMQFLDEGAQFEGLVKRWDARKYYIKPFVQRKQRYNRWVRRRSMEKINRILERVRYEKANARSTNPRLAAILGSK 161
The following BLAST results are available for this feature:
BLAST of NO17G00770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200140016001800SequenceEWM21150.1
Match NameE-valueIdentityDescription
EWM21150.11.000e-4262.25hypothetical protein Naga_100319g8 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00770NO17G00770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00770.1NO17G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00770.1.cds1NO17G00770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00770.1.cds2NO17G00770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00770.1.cds3NO17G00770.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00770.1.cds4NO17G00770.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00770.1 ID=NO17G00770.1|Name=NO17G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1895bp
ATCATACATGAATAAGCGTTTTCTTTCTCTTTTCTTCTATCTAGGCTCTC
CTCCTTCAGTCTATATACTGTACATGCCATTTACTGTTTTCACTCCTGTC
ACACTCTTTCCTTGTGCTCCTGCGCTCCAGGCTTCCTGCCCGTGCACACA
AAAGCATCCTCTATCGTCTGCTGCACCTGGCAAATTATCTCATGGGCCCT
CAGCCTCTCCTCCGCCAACACCTTTCGCTGCTGTGCTTGTACCAGCTGTT
CCCTGACTTTGCTGAGCTCTGTCGCCTTGTACCCCACCTCGGCCAGAAGG
GTCACTCGCTGCTGTTCTTGCAGGCGCCGTCCATTTTCGCGTCGGCCTGG
GGAAGGAGAGAGGGAGGGAGGGAGAGAGATAGCCAGGAAAACGATTAAAT
ATTTTCTGTTTAATCCGAGGGGAGGGGGGAGAAGAGGGGGGAAAGATAGC
TTTAAGTAATAGGATACGTTGACGAATACAAAGAAACGCACTCATTACCC
TCAAGGTAAGCAGGTAAACCTAACATCATGAGCATGAGGAGATCGCGTAC
GTGAAAGGTTGTAAGGAGGACAGCAGTGGTCTCATCTCATGGGCTGCAAA
CAAGTAAGCCGTATCTCACGCCCGCCGTGGGAAGAATCAAACCAAGAAGA
CTTCTCAGCTGTAACACAATTGAAGAAAAGGATGTTCATACATTTCCTCT
TCACATGCATGCATAGCCCTACTACCCACCTACTCTTACCTTCGAGCATT
ACCCGGTCCAGCTCGTCCAGCTTGGCTTTGATCCTTGCCATGCCATCGGC
AGCCGCGGCCCCGCCCCCTGGCGCCTGACCACTCAGGCTGCTCCACTTGC
CACCACCGCTTGGAAAATTCAGCATTTAAGCTGGAAAGGTTGTGAGAGTG
GTGCGATAATAAAAGAGTAGGTGTAAGGTCTGCGGGTCCGGGCGATTCGC
TCTCCCTCCGGCTTTTTATTATGCCTCTTCCGCAATAATAGAGTTGGGAA
CACATGCAAGAGGTACACTTGGATAGATCATAAGTCTCTGAATGGTGTTC
AAGAGGCCTCGCGGAGCTCTGTTGGTTCTAGCGGTCACTGTACTGGCGGC
ATCATCATCATCGCCATCATCATCACCATGGATCATCCGGGAGTGGCAAG
GGAAAGTCTTCCACAACATGAGCCTGCCACCTGCACATCCAACCCCAACC
TCTATCCACTCCCACACGACCACAGGTGATCATTCTCTCTCGAGCAGGTC
ACGATGGTTTCGCGGTTCATTCGCCCCATATTCTCCTGGAGCCAGGATGC
TTTCCGAGTCGCCCCGCTAGCCCTCGCTGCTAGTGCCCGTGGGAGTCTCA
TGGCCGCGTTGGGTGGGGCCTTTCAACGACAACACCCGCAGCAGCAGCAC
TCGTTACAGTCAGCGCACATGCACCAACAGCAGCGGCACCGGTGGGCTGG
CACCGCGGAATTCAATGGGAGCGAGCAGGCGGCCATGGAGTTTTTGAACG
ATGGGGCACAGTTCGAGGGCTTGGCTAAACGGTGGAGCGCCCGCAAGTAT
TACATCAAGCCCTTCGTGCAACGCAAGCAACGCTACAACCGTTGGGTCCG
TCGTCGCTCCCTAGAGAAGATAAATCACATTCTGAATAAAGTGCGCTACG
AGAAAGGAATTGCCAAGTCGGCCAACCCGCAGCTGGCCGCCATCTTCAGC
GGCAAGGCAGCAGCACAAGCAGCGGTGGCGGCTGAGGTGGAAGCAAGTAT
GATCAGGAAGTAACACCTACGACGGAGAGGAGGGAACGTGTTGGTTGCAG
GAGGACAAATGTGATGACTTTGAGCAAGGGCGAAATGTGCATATAAACTT
CGCTTGGGCGACTTGAAAAAGAAAGACACACTGAACGAGGAGAGA
back to top

protein sequence of NO17G00770.1

>NO17G00770.1-protein ID=NO17G00770.1-protein|Name=NO17G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MVSRFIRPIFSWSQDAFRVAPLALAASARGSLMAALGGAFQRQHPQQQHS
LQSAHMHQQQRHRWAGTAEFNGSEQAAMEFLNDGAQFEGLAKRWSARKYY
IKPFVQRKQRYNRWVRRRSLEKINHILNKVRYEKGIAKSANPQLAAIFSG
KAAAQAAVAAEVEASMIRK*
back to top

mRNA from alignment at chr17:264104..266451-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00770.1 ID=NO17G00770.1|Name=NO17G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2348bp|location=Sequence derived from alignment at chr17:264104..266451- (Nannochloropsis oceanica)
ATCATACATGAATAAGCGTTTTCTTTCTCTTTTCTTCTATCTAGGCTCTC
CTCCTTCAGTCTATATACTGTACATGCCATTTACTGTTTTCACTCCTGTC
ACACTCTTTCCTTGTGCTCCTGCGCTCCAGGCTTCCTGCCCGTGCACACA
AAAGCATCCTCTATCGTCTGCTGCACCTGGCAAATTATCTCATGGGCCCT
CAGCCTCTCCTCCGCCAACACCTTTCGCTGCTGTGCTTGTACCAGCTGTT
CCCTGACTTTGCTGAGCTCTGTCGCCTTGTACCCCACCTCGGCCAGAAGG
GTCACTCGCTGCTGTTCTTGCAGGCGCCGTCCATTTTCGCGTCGGCCTGG
GGAAGGAGAGAGGGAGGGAGGGAGAGAGATAGCCAGGAAAACGATTAAAT
ATTTTCTGTTTAATCCGAGGGGAGGGGGGAGAAGAGGGGGGAAAGATAGC
TTTAAGTAATAGGATACGTTGACGAATACAAAGAAACGCACTCATTACCC
TCAAGGTAAGCAGGTAAACCTAACATCATGAGCATGAGGAGATCGCGTAC
GTGAAAGGTTGTAAGGAGGACAGCAGTGGTCTCATCTCATGGGCTGCAAA
CAAGTAAGCCGTATCTCACGCCCGCCGTGGGAAGAATCAAACCAAGAAGA
CTTCTCAGCTGTAACACAATTGAAGAAAAGGATGTTCATACATTTCCTCT
TCACATGCATGCATAGCCCTACTACCCACCTACTCTTACCTTCGAGCATT
ACCCGGTCCAGCTCGTCCAGCTTGGCTTTGATCCTTGCCATGCCATCGGC
AGCCGCGGCCCCGCCCCCTGGCGCCTGACCACTCAGGCTGCTCCACTTGC
CACCACCGCTTGGAAAATTCAGCATTTAAGCTGGAAAGGTTGTGAGAGTG
GTGCGATAATAAAAGAGTAGGTGTAAGGTCTGCGGGTCCGGGCGATTCGC
TCTCCCTCCGGCTTTTTATTATGCCTCTTCCGCAATAATAGAGTTGGGAA
CACATGCAAGAGGTACACTTGGATAGATCATAAGTCTCTGAATGGTGTTC
AAGAGGCCTCGCGGAGCTCTGTTGGTTCTAGCGGTCACTGTACTGGCGGC
ATCATCATCATCGCCATCATCATCACCATGGATCATCCGGGAGTGGCAAG
GGAAAGTCTTCCACAACATGAGCCTGCCACCTGCACATCCAACCCCAACC
TCTATCCACTCCCACACGACCACAGGTGATCATTCTCTCTCGAGCAGGTC
ACGATGGTTTCGCGGTTCATTCGCCCCATATTCTCCTGGAGCCAGGATGC
TTTCCGAGTCGCCCCGCTAGCCCTCGCTGCTAGTGCCCGTGGGAGTCTCA
TGGCCGCGTTGGGTGGGGCCTTTCAACGACAACACCCGCAGCAGCAGCAC
TCGTTACAGTCAGCGCACATGCACCAACAGCAGCGGCACCGGTGGGCTGG
CACCGCGGAATTCAATGGGAGCGAGCAGGCGGTGAGCGCTGGAGATTTGA
TGGGTTGGCAAGGGGGAAGGTTAGATGTGATGCTAAGCTAAAGTAAAACA
GCTTCTTGATATGCACGCGTTCATATTCATGCACCAATAACTACAGGCCA
TGGAGTTTTTGAACGATGGGGCACAGTTCGAGGGCTTGGCTAAACGGTGG
AGCGCCCGCAAGGTATGTTGGATAGCAAGTAAATTTCAAAGTCTCGTCTT
AGGCAGTCCTGCCCGCTTTTCCCTCTGTGGAGTACTTTCTATAGAAAATG
GCGCATTAAAAATGACACGCGTGGGTGGGGGGGCATCATTTCGCATATCT
TTCCCCTGCGTCGATCGGCCAGTTCCACCCGTCCTTTCCTCTTCCCTCCC
TCCTCTCCTCCCTTTCCCTCATTCTCCTCCCCGTGATCGCAGTATTACAT
CAAGCCCTTCGTGCAACGCAAGCAACGCTACAACCGTTGGGTCCGTCGTC
GCTCCCTAGAGAAGATAAATCACATTCTGAATAAAGTGCGCTACGAGAAA
GGAATGTACGTGCAACAATGGAGGGAGGGATGGAGGTAGGGATGAAGGGC
AAGTTGGATGAATATTCACACGTCACGCCAACTTTGCTCCTTTCCTTTCC
TCGCTTTGAACAGTGCCAAGTCGGCCAACCCGCAGCTGGCCGCCATCTTC
AGCGGCAAGGCAGCAGCACAAGCAGCGGTGGCGGCTGAGGTGGAAGCAAG
TATGATCAGGAAGTAACACCTACGACGGAGAGGAGGGAACGTGTTGGTTG
CAGGAGGACAAATGTGATGACTTTGAGCAAGGGCGAAATGTGCATATAAA
CTTCGCTTGGGCGACTTGAAAAAGAAAGACACACTGAACGAGGAGAGA
back to top

Coding sequence (CDS) from alignment at chr17:264104..266451-

>NO17G00770.1 ID=NO17G00770.1|Name=NO17G00770.1|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at chr17:264104..266451- (Nannochloropsis oceanica)
ATGGTTTCGCGGTTCATTCGCCCCATATTCTCCTGGAGCCAGGATGCTTT
CCGAGTCGCCCCGCTAGCCCTCGCTGCTAGTGCCCGTGGGAGTCTCATGG
CCGCGTTGGGTGGGGCCTTTCAACGACAACACCCGCAGCAGCAGCACTCG
TTACAGTCAGCGCACATGCACCAACAGCAGCGGCACCGGTGGGCTGGCAC
CGCGGAATTCAATGGGAGCGAGCAGGCGGCCATGGAGTTTTTGAACGATG
GGGCACAGTTCGAGGGCTTGGCTAAACGGTGGAGCGCCCGCAAGTATTAC
ATCAAGCCCTTCGTGCAACGCAAGCAACGCTACAACCGTTGGGTCCGTCG
TCGCTCCCTAGAGAAGATAAATCACATTCTGAATAAAGTGCGCTACGAGA
AAGGAATTGCCAAGTCGGCCAACCCGCAGCTGGCCGCCATCTTCAGCGGC
AAGGCAGCAGCACAAGCAGCGGTGGCGGCTGAGGTGGAAGCAAGTATGAT
CAGGAAGTAA
back to top
Synonyms
Publications