NO17G00730, NO17G00730 (gene) Nannochloropsis oceanica

Overview
NameNO17G00730
Unique NameNO17G00730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1166
Alignment locationchr17:256040..257205 -

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Properties
Property NameValue
Description40S ribosomal protein S12
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:256040..257205 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR029064L30e-like
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR000530Ribosomal_S12e
Homology
BLAST of NO17G00730 vs. NCBI_GenBank
Match: EWM21153.1 (40s ribosomal protein s12 [Nannochloropsis gaditana])

HSP 1 Score: 254.6 bits (649), Expect = 2.500e-64
Identity = 140/160 (87.50%), Postives = 144/160 (90.00%), Query Frame = 0
Query:   35 LGRPSKMAEDDPIMDVAE--EGXXXXXXAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFIAKVQE 193
            L  P  MAEDDPIMDVAE  E XXXXXX       LELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYI+TREKLGE+VGLAK+DKEGN RGK+QKCSVAVVTDFGEESREYHKLQEFIAK QE
Sbjct:   40 LRTPKIMAEDDPIMDVAEGGEXXXXXXXXXXXXXXLELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQE 199          
BLAST of NO17G00730 vs. NCBI_GenBank
Match: XP_005852676.1 (small subunit ribosomal protein S12e [Nannochloropsis gaditana CCMP526] >EKU23154.1 small subunit ribosomal protein S12e [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 252.7 bits (644), Expect = 9.300e-64
Identity = 138/154 (89.61%), Postives = 142/154 (92.21%), Query Frame = 0
Query:   41 MAEDDPIMDVAE--EGXXXXXXAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFIAKVQE 193
            MAEDDPIMDVAE  E XXXXXX       LELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYI+TREKLGE+VGLAK+DKEGN RGK+QKCSVAVVTDFGEESREYHKLQEFIAK QE
Sbjct:    1 MAEDDPIMDVAEGGEXXXXXXXXXXXXXXLELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQE 154          
BLAST of NO17G00730 vs. NCBI_GenBank
Match: EJK74848.1 (hypothetical protein THAOC_03450 [Thalassiosira oceanica])

HSP 1 Score: 131.3 bits (329), Expect = 3.100e-27
Identity = 65/126 (51.59%), Postives = 92/126 (73.02%), Query Frame = 0
Query:   64 VEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFIAK 190
            VEE  E+N   AL+ VL+KAL+HDGL++GLHE AKALDR SA+LC LA+D +++EYK L+ ALC EG V ++ +D+ + LG + GLAK+D +G  + K  + S AV+TDFGEE+R    L +++ K
Sbjct:   14 VEEVAEMNVLDALKEVLKKALIHDGLRKGLHECAKALDRRSARLCCLAKDCENEEYKKLIRALCAEGEVSVIMVDSGKDLGAWCGLAKLDADGEVK-KAVRTSCAVITDFGEETRALTVLLDYLQK 138          
BLAST of NO17G00730 vs. NCBI_GenBank
Match: KMZ67677.1 (40S ribosomal protein S12 [Zostera marina])

HSP 1 Score: 129.0 bits (323), Expect = 1.600e-26
Identity = 68/147 (46.26%), Postives = 100/147 (68.03%), Query Frame = 0
Query:   41 MAEDDPIMDVAEEGXXXXXXAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFI 188
            M+++ P++ VAE        APA+ E ++L   +AL+ VL+KAL HDG+ RGLHE AKA+++H+A+LC+LA D D  +Y  LV ALC + +V L+ + + + LGE+VGL K+D EG  R K+  CS  VV D+GEES   H +QE++
Sbjct:    1 MSDEAPVIPVAE--------APALGEPMDL--MTALQLVLKKALAHDGISRGLHEVAKAIEKHAAQLCILAEDCDQPDYVKLVKALCADHNVHLVAVPSAKTLGEWVGLCKIDSEGKAR-KVVGCSCVVVKDYGEESEGLHIVQEYV 136          
BLAST of NO17G00730 vs. NCBI_GenBank
Match: CBJ28519.1 (ribosomal protein S12 [Ectocarpus siliculosus])

HSP 1 Score: 127.1 bits (318), Expect = 5.900e-26
Identity = 70/138 (50.72%), Postives = 94/138 (68.12%), Query Frame = 0
Query:   52 EEGXXXXXXAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFIAK 190
            EE       +P VE + E++   AL+ VL+KAL+ DGL+RGLHE AKALDR SA+LC LA+D D+ EY  LV ALC EG+V L+ +DTR++LG++ GL K+  EG    KI  CS AVVTD+GE+++    L E + K
Sbjct:    3 EEVAVEETGSPEVEVK-EISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCDNPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGAEGEAT-KIVPCSCAVVTDYGEQTQALGVLLEHLKK 138          
BLAST of NO17G00730 vs. NCBI_GenBank
Match: XP_009829709.1 (hypothetical protein H257_06249 [Aphanomyces astaci] >ETV80762.1 hypothetical protein H257_06249 [Aphanomyces astaci])

HSP 1 Score: 126.7 bits (317), Expect = 7.700e-26
Identity = 68/122 (55.74%), Postives = 85/122 (69.67%), Query Frame = 0
Query:   66 EELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFI 188
            E  EL E  AL+ VL+KALVHDGL+RGLHESAKALD   A+LCVLA+D D   Y+ LV ALC+E  V L+ + + ++LGE+ GL K+D +G  R K+   SVAVVTDFGEE R    L  F+
Sbjct:   12 EVAELGELEALQEVLKKALVHDGLKRGLHESAKALDSRRARLCVLAQDCDEPSYQKLVRALCEEHGVNLIMVPSGKQLGEWSGLCKIDDKGEAR-KVVSTSVAVVTDFGEEHRALDVLLNFL 132          
BLAST of NO17G00730 vs. NCBI_GenBank
Match: GAV07194.1 (hypothetical protein RvY_17065 [Ramazzottius varieornatus])

HSP 1 Score: 126.7 bits (317), Expect = 7.700e-26
Identity = 64/138 (46.38%), Postives = 92/138 (66.67%), Query Frame = 0
Query:   49 DVAEEGXXXXXXAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEF 187
            D AEEG      +       +++  +AL+ VL+ AL++DGL RG+HE AKALD+  A LCVLA++ D   Y  LV ALCKE S+ L+ +D  +KLGE+VGL K+DKEG PR K+ +CS  VV D+G+E+  +  L+++
Sbjct:   13 DAAEEGAVAATGSAVPSAGGKMDTTTALQEVLKGALIYDGLARGIHECAKALDKRQAMLCVLAKNCDEPMYVKLVEALCKEHSINLIRVDDNKKLGEWVGLCKIDKEGKPR-KVVRCSCVVVKDYGKETTAHETLKQY 149          
BLAST of NO17G00730 vs. NCBI_GenBank
Match: XP_011119936.1 (hypothetical protein AOL_s00054g318 [Arthrobotrys oligospora ATCC 24927] >EGX51619.1 hypothetical protein AOL_s00054g318 [Arthrobotrys oligospora ATCC 24927])

HSP 1 Score: 126.3 bits (316), Expect = 1.000e-25
Identity = 68/144 (47.22%), Postives = 93/144 (64.58%), Query Frame = 0
Query:   43 EDDPIMDVAEEGXXXXXXAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEF 187
            E+ P ++VA+E       A     + +++ E AL+GVLR AL+HDGL RGL E++KALDR  A +CVL  + D D YK LV ALC E  +PL+ +   +KLGE+ GL  +D+EGNPR K+  CS  VV D+GEES E   L ++
Sbjct:  263 EEVPAVEVADE---IEVAADTSAGKGQMSVEDALKGVLRHALIHDGLARGLREASKALDRRQAHMCVLNENCDEDAYKKLVEALCAEHKIPLIKVGDGKKLGEWAGLCTLDREGNPR-KVVNCSCVVVRDWGEESTERSILLDY 402          
BLAST of NO17G00730 vs. NCBI_GenBank
Match: XP_011200590.1 (PREDICTED: 40S ribosomal protein S12 [Bactrocera dorsalis] >XP_014090959.1 PREDICTED: 40S ribosomal protein S12 [Bactrocera oleae] >XP_018796158.1 PREDICTED: 40S ribosomal protein S12 [Bactrocera latifrons])

HSP 1 Score: 126.3 bits (316), Expect = 1.000e-25
Identity = 60/127 (47.24%), Postives = 91/127 (71.65%), Query Frame = 0
Query:   61 APAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFI 188
            AP + +++++N  +AL+ VL+K+L+ DGL  G+H++ KALD+  A LC+LA  +D D YK LVTALC E  +PL+ +D+ +KLGE+ GL K+DKEG PR K+  C+V V+ DFGEE+     ++E +
Sbjct:   12 APVIGDKMDIN--TALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILADSMDEDLYKKLVTALCHEHQIPLIRVDSHKKLGEWSGLCKIDKEGKPR-KVSGCAVVVIKDFGEETPALDVVKEHL 135          
BLAST of NO17G00730 vs. NCBI_GenBank
Match: XP_005187609.1 (PREDICTED: 40S ribosomal protein S12 [Musca domestica] >XP_013113065.1 PREDICTED: 40S ribosomal protein S12 [Stomoxys calcitrans])

HSP 1 Score: 125.9 bits (315), Expect = 1.300e-25
Identity = 62/127 (48.82%), Postives = 89/127 (70.08%), Query Frame = 0
Query:   61 APAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFI 188
            APAV   +++N+  AL+ VL+K+L+ DGL  G+H++ KALD+  A LC+LA   D   YK LVTALC E  +PL+ +D+ +KLGE+ GL K+DKEG PR K+  CSV V+ DFGEE++    ++E +
Sbjct:   12 APAVGGAMDINQ--ALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCHEHQIPLIRVDSHKKLGEWSGLCKIDKEGKPR-KVCGCSVVVIKDFGEETQALDVVKEHL 135          
The following BLAST results are available for this feature:
BLAST of NO17G00730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21153.12.500e-6487.5040s ribosomal protein s12 [Nannochloropsis gaditan... [more]
XP_005852676.19.300e-6489.61small subunit ribosomal protein S12e [Nannochlorop... [more]
EJK74848.13.100e-2751.59hypothetical protein THAOC_03450 [Thalassiosira oc... [more]
KMZ67677.11.600e-2646.2640S ribosomal protein S12 [Zostera marina][more]
CBJ28519.15.900e-2650.72ribosomal protein S12 [Ectocarpus siliculosus][more]
XP_009829709.17.700e-2655.74hypothetical protein H257_06249 [Aphanomyces astac... [more]
GAV07194.17.700e-2646.38hypothetical protein RvY_17065 [Ramazzottius varie... [more]
XP_011119936.11.000e-2547.22hypothetical protein AOL_s00054g318 [Arthrobotrys ... [more]
XP_011200590.11.000e-2547.24PREDICTED: 40S ribosomal protein S12 [Bactrocera d... [more]
XP_005187609.11.300e-2548.82PREDICTED: 40S ribosomal protein S12 [Musca domest... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004796NSK004796Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00730.1NO17G00730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600117gene_7812Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100108g19gene9272Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00730.1NO17G00730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00730 ID=NO17G00730|Name=NO17G00730|organism=Nannochloropsis oceanica|type=gene|length=1166bp
CTTGTCGTCCGCTCGTTGCCATTCAGAGCCTCTTCTTTCTTCCCTTCAAT
TCCTTTGCAGTGCGTGCTTCCTGTCCCTCTGTTTGTCAATCCCTTCCACC
TCTAAGCTTGTTCATCACACAGTCAAAAGGCACATTTAAAGCACCTGGCT
GTCGCTTCTGGATGGCTGCCATCGCCTCTCCTCCTTCCCTCGCACCTCTC
ATCACCACTTTCTTCTTTCTTCCTCCTCCTCCACGCTCACACAAACATAC
AGGAAAAACAGTCTTAGGACGCCCATCCAAAATGGCAGAGGACGACCCGA
TCATGGACGTGGCGGAGGAGGGAGAGGAGGGTGAGGAGGCGGCCCCCGCT
GTGGAGGAGGAGTTGGAGCTCAATGAGGAGTCGGCACTCCGCGGTGTCCT
GCGCAAGGCGCTGGTGCACGACGGCCTCCAGCGTGGCTTGCACGAGAGTG
CCAAGGCCCTGGACCGCCACTCGGCCAAGCTGTGCGTGTTAGCGCGTGAT
GTGGACTCTGACGAGTACAAGACGTTGGTGACGGCGCTGTGCAAGGAGGG
GAGCGTGCCCTTGCTGTACATCGACACTCGCGAGAAGCTCGGGGAGTTCG
TTGGCCTGGCTAAGGTTGACAAGGAGGGCAACCCCCGTGGAAAGATCCAG
AAATGCTCTGTGGCTGTGGTGACTGACTTCGGGGAGGAGAGCCGCGAGTA
CCACAAGCTTCAGGAGTTCATCGCTAAGGTGCAAGAGTAGTGTTCTATCC
AGTACTGAGGACGGGAGGGAGGGAGGGAAGGAAAATGAGAGGGAGAAACG
AAAGGGGCAGCACAGTGACGGTGTTGTTCATTTTCTTCCCTCCTTTTCGT
TTTTATTTTCTTGTTATCCACCGTATGCACCAGTGTTTGAAGAGAAGTAG
CAGCAGCTGTACCAGGCCGGGCGAGATTGGATGCCATAAGCTTCTTCATC
CTCCTCCTCTACTGATGTAGGAGGTTGAGTAAAAGCTCTAGTCATCAATC
CAACATCATCATCTCCTTGTTCTATCTCTTTCTTGCCACGTTGATCGTGG
GTTTTTCCATCTCGGGCTCGCTGCCCTGCTTCTGACAGGATATGAGATGA
GTCCGATTTTAGGAAACACAATTTAGAAAAGAAAAAAGAATATAAGGCGT
CAACGAAGATAAGAAT
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protein sequence of NO17G00730.1

>NO17G00730.1-protein ID=NO17G00730.1-protein|Name=NO17G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MAAIASPPSLAPLITTFFFLPPPPRSHKHTGKTVLGRPSKMAEDDPIMDV
AEEGEEGEEAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKAL
DRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLA
KVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFIAKVQE*
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Synonyms
Publications