NO17G00730, NO17G00730 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO17G00730 vs. NCBI_GenBank
Match: EWM21153.1 (40s ribosomal protein s12 [Nannochloropsis gaditana]) HSP 1 Score: 254.6 bits (649), Expect = 2.500e-64 Identity = 140/160 (87.50%), Postives = 144/160 (90.00%), Query Frame = 0 Query: 35 LGRPSKMAEDDPIMDVAE--EGXXXXXXAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFIAKVQE 193 L P MAEDDPIMDVAE E XXXXXX LELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYI+TREKLGE+VGLAK+DKEGN RGK+QKCSVAVVTDFGEESREYHKLQEFIAK QE Sbjct: 40 LRTPKIMAEDDPIMDVAEGGEXXXXXXXXXXXXXXLELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQE 199
BLAST of NO17G00730 vs. NCBI_GenBank
Match: XP_005852676.1 (small subunit ribosomal protein S12e [Nannochloropsis gaditana CCMP526] >EKU23154.1 small subunit ribosomal protein S12e [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 252.7 bits (644), Expect = 9.300e-64 Identity = 138/154 (89.61%), Postives = 142/154 (92.21%), Query Frame = 0 Query: 41 MAEDDPIMDVAE--EGXXXXXXAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFIAKVQE 193 MAEDDPIMDVAE E XXXXXX LELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYI+TREKLGE+VGLAK+DKEGN RGK+QKCSVAVVTDFGEESREYHKLQEFIAK QE Sbjct: 1 MAEDDPIMDVAEGGEXXXXXXXXXXXXXXLELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQE 154
BLAST of NO17G00730 vs. NCBI_GenBank
Match: EJK74848.1 (hypothetical protein THAOC_03450 [Thalassiosira oceanica]) HSP 1 Score: 131.3 bits (329), Expect = 3.100e-27 Identity = 65/126 (51.59%), Postives = 92/126 (73.02%), Query Frame = 0 Query: 64 VEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFIAK 190 VEE E+N AL+ VL+KAL+HDGL++GLHE AKALDR SA+LC LA+D +++EYK L+ ALC EG V ++ +D+ + LG + GLAK+D +G + K + S AV+TDFGEE+R L +++ K Sbjct: 14 VEEVAEMNVLDALKEVLKKALIHDGLRKGLHECAKALDRRSARLCCLAKDCENEEYKKLIRALCAEGEVSVIMVDSGKDLGAWCGLAKLDADGEVK-KAVRTSCAVITDFGEETRALTVLLDYLQK 138
BLAST of NO17G00730 vs. NCBI_GenBank
Match: KMZ67677.1 (40S ribosomal protein S12 [Zostera marina]) HSP 1 Score: 129.0 bits (323), Expect = 1.600e-26 Identity = 68/147 (46.26%), Postives = 100/147 (68.03%), Query Frame = 0 Query: 41 MAEDDPIMDVAEEGXXXXXXAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFI 188 M+++ P++ VAE APA+ E ++L +AL+ VL+KAL HDG+ RGLHE AKA+++H+A+LC+LA D D +Y LV ALC + +V L+ + + + LGE+VGL K+D EG R K+ CS VV D+GEES H +QE++ Sbjct: 1 MSDEAPVIPVAE--------APALGEPMDL--MTALQLVLKKALAHDGISRGLHEVAKAIEKHAAQLCILAEDCDQPDYVKLVKALCADHNVHLVAVPSAKTLGEWVGLCKIDSEGKAR-KVVGCSCVVVKDYGEESEGLHIVQEYV 136
BLAST of NO17G00730 vs. NCBI_GenBank
Match: CBJ28519.1 (ribosomal protein S12 [Ectocarpus siliculosus]) HSP 1 Score: 127.1 bits (318), Expect = 5.900e-26 Identity = 70/138 (50.72%), Postives = 94/138 (68.12%), Query Frame = 0 Query: 52 EEGXXXXXXAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFIAK 190 EE +P VE + E++ AL+ VL+KAL+ DGL+RGLHE AKALDR SA+LC LA+D D+ EY LV ALC EG+V L+ +DTR++LG++ GL K+ EG KI CS AVVTD+GE+++ L E + K Sbjct: 3 EEVAVEETGSPEVEVK-EISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCDNPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGAEGEAT-KIVPCSCAVVTDYGEQTQALGVLLEHLKK 138
BLAST of NO17G00730 vs. NCBI_GenBank
Match: XP_009829709.1 (hypothetical protein H257_06249 [Aphanomyces astaci] >ETV80762.1 hypothetical protein H257_06249 [Aphanomyces astaci]) HSP 1 Score: 126.7 bits (317), Expect = 7.700e-26 Identity = 68/122 (55.74%), Postives = 85/122 (69.67%), Query Frame = 0 Query: 66 EELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFI 188 E EL E AL+ VL+KALVHDGL+RGLHESAKALD A+LCVLA+D D Y+ LV ALC+E V L+ + + ++LGE+ GL K+D +G R K+ SVAVVTDFGEE R L F+ Sbjct: 12 EVAELGELEALQEVLKKALVHDGLKRGLHESAKALDSRRARLCVLAQDCDEPSYQKLVRALCEEHGVNLIMVPSGKQLGEWSGLCKIDDKGEAR-KVVSTSVAVVTDFGEEHRALDVLLNFL 132
BLAST of NO17G00730 vs. NCBI_GenBank
Match: GAV07194.1 (hypothetical protein RvY_17065 [Ramazzottius varieornatus]) HSP 1 Score: 126.7 bits (317), Expect = 7.700e-26 Identity = 64/138 (46.38%), Postives = 92/138 (66.67%), Query Frame = 0 Query: 49 DVAEEGXXXXXXAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEF 187 D AEEG + +++ +AL+ VL+ AL++DGL RG+HE AKALD+ A LCVLA++ D Y LV ALCKE S+ L+ +D +KLGE+VGL K+DKEG PR K+ +CS VV D+G+E+ + L+++ Sbjct: 13 DAAEEGAVAATGSAVPSAGGKMDTTTALQEVLKGALIYDGLARGIHECAKALDKRQAMLCVLAKNCDEPMYVKLVEALCKEHSINLIRVDDNKKLGEWVGLCKIDKEGKPR-KVVRCSCVVVKDYGKETTAHETLKQY 149
BLAST of NO17G00730 vs. NCBI_GenBank
Match: XP_011119936.1 (hypothetical protein AOL_s00054g318 [Arthrobotrys oligospora ATCC 24927] >EGX51619.1 hypothetical protein AOL_s00054g318 [Arthrobotrys oligospora ATCC 24927]) HSP 1 Score: 126.3 bits (316), Expect = 1.000e-25 Identity = 68/144 (47.22%), Postives = 93/144 (64.58%), Query Frame = 0 Query: 43 EDDPIMDVAEEGXXXXXXAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEF 187 E+ P ++VA+E A + +++ E AL+GVLR AL+HDGL RGL E++KALDR A +CVL + D D YK LV ALC E +PL+ + +KLGE+ GL +D+EGNPR K+ CS VV D+GEES E L ++ Sbjct: 263 EEVPAVEVADE---IEVAADTSAGKGQMSVEDALKGVLRHALIHDGLARGLREASKALDRRQAHMCVLNENCDEDAYKKLVEALCAEHKIPLIKVGDGKKLGEWAGLCTLDREGNPR-KVVNCSCVVVRDWGEESTERSILLDY 402
BLAST of NO17G00730 vs. NCBI_GenBank
Match: XP_011200590.1 (PREDICTED: 40S ribosomal protein S12 [Bactrocera dorsalis] >XP_014090959.1 PREDICTED: 40S ribosomal protein S12 [Bactrocera oleae] >XP_018796158.1 PREDICTED: 40S ribosomal protein S12 [Bactrocera latifrons]) HSP 1 Score: 126.3 bits (316), Expect = 1.000e-25 Identity = 60/127 (47.24%), Postives = 91/127 (71.65%), Query Frame = 0 Query: 61 APAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFI 188 AP + +++++N +AL+ VL+K+L+ DGL G+H++ KALD+ A LC+LA +D D YK LVTALC E +PL+ +D+ +KLGE+ GL K+DKEG PR K+ C+V V+ DFGEE+ ++E + Sbjct: 12 APVIGDKMDIN--TALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILADSMDEDLYKKLVTALCHEHQIPLIRVDSHKKLGEWSGLCKIDKEGKPR-KVSGCAVVVIKDFGEETPALDVVKEHL 135
BLAST of NO17G00730 vs. NCBI_GenBank
Match: XP_005187609.1 (PREDICTED: 40S ribosomal protein S12 [Musca domestica] >XP_013113065.1 PREDICTED: 40S ribosomal protein S12 [Stomoxys calcitrans]) HSP 1 Score: 125.9 bits (315), Expect = 1.300e-25 Identity = 62/127 (48.82%), Postives = 89/127 (70.08%), Query Frame = 0 Query: 61 APAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFI 188 APAV +++N+ AL+ VL+K+L+ DGL G+H++ KALD+ A LC+LA D YK LVTALC E +PL+ +D+ +KLGE+ GL K+DKEG PR K+ CSV V+ DFGEE++ ++E + Sbjct: 12 APAVGGAMDINQ--ALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCHEHQIPLIRVDSHKKLGEWSGLCKIDKEGKPR-KVCGCSVVVIKDFGEETQALDVVKEHL 135 The following BLAST results are available for this feature:
BLAST of NO17G00730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO17G00730 ID=NO17G00730|Name=NO17G00730|organism=Nannochloropsis oceanica|type=gene|length=1166bpback to top protein sequence of NO17G00730.1 >NO17G00730.1-protein ID=NO17G00730.1-protein|Name=NO17G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=193bpback to top Synonyms
Publications
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