NO17G00730.1, NO17G00730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00730.1
Unique NameNO17G00730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1166
Alignment locationchr17:256040..257205 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:256040..257205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G00730.1 vs.
Match: EWM21153.1 (40s ribosomal protein s12 [Nannochloropsis gaditana])

HSP 1 Score: 276.9 bits (707), Expect = 4.600e-71
Identity = 153/188 (81.38%), Postives = 159/188 (84.57%), Query Frame = 0 
Query:   12 PLITTFFF-----LPPPPRSHKHTGKTVLGRPSKMAEDDPIMDVAEEGEEG--EEAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLAKVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFIAKVQE 193
            P++  FFF      P   RS        L  P  MAEDDPIMDVAE GEEG  E AAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYI+TREKLGE+VGLAK+DKEGN RGK+QKCSVAVVTDFGEESREYHKLQEFIAK QE
Sbjct:   20 PMLFLFFFSLFVLFPHAERS--------LRTPKIMAEDDPIMDVAEGGEEGGEEAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQE 199
The following BLAST results are available for this feature:
BLAST of NO17G00730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21153.14.600e-7181.3840s ribosomal protein s12 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00730NO17G00730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00730.1NO17G00730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00730.1.cds1NO17G00730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00730.1 ID=NO17G00730.1|Name=NO17G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1166bp
CTTGTCGTCCGCTCGTTGCCATTCAGAGCCTCTTCTTTCTTCCCTTCAAT
TCCTTTGCAGTGCGTGCTTCCTGTCCCTCTGTTTGTCAATCCCTTCCACC
TCTAAGCTTGTTCATCACACAGTCAAAAGGCACATTTAAAGCACCTGGCT
GTCGCTTCTGGATGGCTGCCATCGCCTCTCCTCCTTCCCTCGCACCTCTC
ATCACCACTTTCTTCTTTCTTCCTCCTCCTCCACGCTCACACAAACATAC
AGGAAAAACAGTCTTAGGACGCCCATCCAAAATGGCAGAGGACGACCCGA
TCATGGACGTGGCGGAGGAGGGAGAGGAGGGTGAGGAGGCGGCCCCCGCT
GTGGAGGAGGAGTTGGAGCTCAATGAGGAGTCGGCACTCCGCGGTGTCCT
GCGCAAGGCGCTGGTGCACGACGGCCTCCAGCGTGGCTTGCACGAGAGTG
CCAAGGCCCTGGACCGCCACTCGGCCAAGCTGTGCGTGTTAGCGCGTGAT
GTGGACTCTGACGAGTACAAGACGTTGGTGACGGCGCTGTGCAAGGAGGG
GAGCGTGCCCTTGCTGTACATCGACACTCGCGAGAAGCTCGGGGAGTTCG
TTGGCCTGGCTAAGGTTGACAAGGAGGGCAACCCCCGTGGAAAGATCCAG
AAATGCTCTGTGGCTGTGGTGACTGACTTCGGGGAGGAGAGCCGCGAGTA
CCACAAGCTTCAGGAGTTCATCGCTAAGGTGCAAGAGTAGTGTTCTATCC
AGTACTGAGGACGGGAGGGAGGGAGGGAAGGAAAATGAGAGGGAGAAACG
AAAGGGGCAGCACAGTGACGGTGTTGTTCATTTTCTTCCCTCCTTTTCGT
TTTTATTTTCTTGTTATCCACCGTATGCACCAGTGTTTGAAGAGAAGTAG
CAGCAGCTGTACCAGGCCGGGCGAGATTGGATGCCATAAGCTTCTTCATC
CTCCTCCTCTACTGATGTAGGAGGTTGAGTAAAAGCTCTAGTCATCAATC
CAACATCATCATCTCCTTGTTCTATCTCTTTCTTGCCACGTTGATCGTGG
GTTTTTCCATCTCGGGCTCGCTGCCCTGCTTCTGACAGGATATGAGATGA
GTCCGATTTTAGGAAACACAATTTAGAAAAGAAAAAAGAATATAAGGCGT
CAACGAAGATAAGAAT
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protein sequence of NO17G00730.1

>NO17G00730.1-protein ID=NO17G00730.1-protein|Name=NO17G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MAAIASPPSLAPLITTFFFLPPPPRSHKHTGKTVLGRPSKMAEDDPIMDV
AEEGEEGEEAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKAL
DRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIDTREKLGEFVGLA
KVDKEGNPRGKIQKCSVAVVTDFGEESREYHKLQEFIAKVQE*
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mRNA from alignment at chr17:256040..257205-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00730.1 ID=NO17G00730.1|Name=NO17G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1166bp|location=Sequence derived from alignment at chr17:256040..257205- (Nannochloropsis oceanica)
CTTGTCGTCCGCTCGTTGCCATTCAGAGCCTCTTCTTTCTTCCCTTCAAT
TCCTTTGCAGTGCGTGCTTCCTGTCCCTCTGTTTGTCAATCCCTTCCACC
TCTAAGCTTGTTCATCACACAGTCAAAAGGCACATTTAAAGCACCTGGCT
GTCGCTTCTGGATGGCTGCCATCGCCTCTCCTCCTTCCCTCGCACCTCTC
ATCACCACTTTCTTCTTTCTTCCTCCTCCTCCACGCTCACACAAACATAC
AGGAAAAACAGTCTTAGGACGCCCATCCAAAATGGCAGAGGACGACCCGA
TCATGGACGTGGCGGAGGAGGGAGAGGAGGGTGAGGAGGCGGCCCCCGCT
GTGGAGGAGGAGTTGGAGCTCAATGAGGAGTCGGCACTCCGCGGTGTCCT
GCGCAAGGCGCTGGTGCACGACGGCCTCCAGCGTGGCTTGCACGAGAGTG
CCAAGGCCCTGGACCGCCACTCGGCCAAGCTGTGCGTGTTAGCGCGTGAT
GTGGACTCTGACGAGTACAAGACGTTGGTGACGGCGCTGTGCAAGGAGGG
GAGCGTGCCCTTGCTGTACATCGACACTCGCGAGAAGCTCGGGGAGTTCG
TTGGCCTGGCTAAGGTTGACAAGGAGGGCAACCCCCGTGGAAAGATCCAG
AAATGCTCTGTGGCTGTGGTGACTGACTTCGGGGAGGAGAGCCGCGAGTA
CCACAAGCTTCAGGAGTTCATCGCTAAGGTGCAAGAGTAGTGTTCTATCC
AGTACTGAGGACGGGAGGGAGGGAGGGAAGGAAAATGAGAGGGAGAAACG
AAAGGGGCAGCACAGTGACGGTGTTGTTCATTTTCTTCCCTCCTTTTCGT
TTTTATTTTCTTGTTATCCACCGTATGCACCAGTGTTTGAAGAGAAGTAG
CAGCAGCTGTACCAGGCCGGGCGAGATTGGATGCCATAAGCTTCTTCATC
CTCCTCCTCTACTGATGTAGGAGGTTGAGTAAAAGCTCTAGTCATCAATC
CAACATCATCATCTCCTTGTTCTATCTCTTTCTTGCCACGTTGATCGTGG
GTTTTTCCATCTCGGGCTCGCTGCCCTGCTTCTGACAGGATATGAGATGA
GTCCGATTTTAGGAAACACAATTTAGAAAAGAAAAAAGAATATAAGGCGT
CAACGAAGATAAGAAT
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Coding sequence (CDS) from alignment at chr17:256040..257205-

>NO17G00730.1 ID=NO17G00730.1|Name=NO17G00730.1|organism=Nannochloropsis oceanica|type=CDS|length=579bp|location=Sequence derived from alignment at chr17:256040..257205- (Nannochloropsis oceanica)
ATGGCTGCCATCGCCTCTCCTCCTTCCCTCGCACCTCTCATCACCACTTT
CTTCTTTCTTCCTCCTCCTCCACGCTCACACAAACATACAGGAAAAACAG
TCTTAGGACGCCCATCCAAAATGGCAGAGGACGACCCGATCATGGACGTG
GCGGAGGAGGGAGAGGAGGGTGAGGAGGCGGCCCCCGCTGTGGAGGAGGA
GTTGGAGCTCAATGAGGAGTCGGCACTCCGCGGTGTCCTGCGCAAGGCGC
TGGTGCACGACGGCCTCCAGCGTGGCTTGCACGAGAGTGCCAAGGCCCTG
GACCGCCACTCGGCCAAGCTGTGCGTGTTAGCGCGTGATGTGGACTCTGA
CGAGTACAAGACGTTGGTGACGGCGCTGTGCAAGGAGGGGAGCGTGCCCT
TGCTGTACATCGACACTCGCGAGAAGCTCGGGGAGTTCGTTGGCCTGGCT
AAGGTTGACAAGGAGGGCAACCCCCGTGGAAAGATCCAGAAATGCTCTGT
GGCTGTGGTGACTGACTTCGGGGAGGAGAGCCGCGAGTACCACAAGCTTC
AGGAGTTCATCGCTAAGGTGCAAGAGTAG
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Synonyms
Publications