NO17G00710, NO17G00710 (gene) Nannochloropsis oceanica

Overview
NameNO17G00710
Unique NameNO17G00710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length375
Alignment locationchr17:252823..253197 -

Link to JBrowse

Properties
Property NameValue
DescriptionQueuosine biosynthesis protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:252823..253197 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR0071156-PTP_synth/QueD
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO17G00710 vs. NCBI_GenBank
Match: XP_005852675.1 (queuosine biosynthesis protein [Nannochloropsis gaditana CCMP526] >EKU23153.1 queuosine biosynthesis protein [Nannochloropsis gaditana CCMP526] >EWM21157.1 6-pyruvoyl tetrahydropterin synthase/QueD family protein [Nannochloropsis gaditana])

HSP 1 Score: 230.7 bits (587), Expect = 2.500e-57
Identity = 108/124 (87.10%), Postives = 114/124 (91.94%), Query Frame = 0
Query:    1 MIAHSFKGEQFGPAQNVHGATYTVDVTFRSKALVPKCNWVVDIGEASTALGRILSKYNFKNLDEVFPEGENTTTEFMCKAIHGDLAKFFCTDRAKTGGGERFKGSICVKLWESHKAWACYEANV 125
            MIAHSFKGEQFGPAQN+HGATYTVDVTFRSK LVPK NWV+DIGEASTAL RILSKYNFKNLD+VFPEGENTTTEFMC+AIH DLA  FCT+RAK+   ERFKGSICVKLWESHKAWACYEA V
Sbjct:   42 MIAHSFKGEQFGPAQNIHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNFKNLDQVFPEGENTTTEFMCRAIHRDLAAHFCTNRAKS-KEERFKGSICVKLWESHKAWACYEAIV 164          
BLAST of NO17G00710 vs. NCBI_GenBank
Match: CBN79282.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 168.3 bits (425), Expect = 1.500e-38
Identity = 80/124 (64.52%), Postives = 94/124 (75.81%), Query Frame = 0
Query:    1 MIAHSFKGEQFGPAQNVHGATYTVDVTFRSKALVPKCNWVVDIGEASTALGRILSKYNFKNLDEVFPEGENTTTEFMCKAIHGDLAKFFCTDRAKTGGGERFKGSICVKLWESHKAWACYEANV 125
            MIAHSF+G QFGPAQ +HGATYTVD  F++ ALV K NWVVDIG AS  L  +LSKYNFKNL+E+FP G+NTTTEFMCK I  +LA       AK   G+ F G++C+KLWESHKAW CYE +V
Sbjct:   42 MIAHSFEGPQFGPAQEMHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLAAVLSKYNFKNLNEIFP-GQNTTTEFMCKVIFDELA-------AKC--GKDFHGTLCIKLWESHKAWGCYEGDV 155          
BLAST of NO17G00710 vs. NCBI_GenBank
Match: XP_005832052.1 (hypothetical protein GUITHDRAFT_152839 [Guillardia theta CCMP2712] >EKX45072.1 hypothetical protein GUITHDRAFT_152839 [Guillardia theta CCMP2712])

HSP 1 Score: 154.8 bits (390), Expect = 1.700e-34
Identity = 74/124 (59.68%), Postives = 90/124 (72.58%), Query Frame = 0
Query:    1 MIAHSFKGEQFGPAQNVHGATYTVDVTFRSKALVPKCNWVVDIGEASTALGRILSKYNFKNLDEVFPEGENTTTEFMCKAIHGDLAKFFCTDRAKTGGGERFKGSICVKLWESHKAWACYEANV 125
            MIAHSF G++FGPAQN+HGATYTVDV F  ++L P+ NWV+DIGE  T L ++L +YNFKNL+E+FP GENTTTEFMCK I   L    C +        +FKGSI VKLWESH AWA Y  ++
Sbjct:   72 MIAHSFTGKEFGPAQNMHGATYTVDVEFHVESLAPRLNWVLDIGEGMTMLKKVLGEYNFKNLNELFP-GENTTTEFMCKKIFEGL----CVELK-----GKFKGSITVKLWESHSAWASYTNDI 185          
BLAST of NO17G00710 vs. NCBI_GenBank
Match: OEU15600.1 (tetrahydrobiopterin biosynthesis enzymes-like protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 146.7 bits (369), Expect = 4.700e-32
Identity = 71/121 (58.68%), Postives = 84/121 (69.42%), Query Frame = 0
Query:    1 MIAHSFKGE-QFGPAQNVHGATYTVDVTFRSKALVPKCNWVVDIGEASTALGRILSKYNFKNLDEVFPEGENTTTEFMCKAIHGDLAKFFCTDRAKTGGGERFKGSICVKLWESHKAWACY 121
            MIAHSF G   FGPA  +HGATYT DV F SK L P+ NWV+DIG+A   L ++LS+YN KNLD+VFP+   TTTEFMCK IH D+ +    D  K      FKG++ VKLWESHKAWA Y
Sbjct:   10 MIAHSFHGHPSFGPAGGLHGATYTADVEFLSKELHPEFNWVIDIGKALDILSKVLSRYNLKNLDDVFPDNIMTTTEFMCKQIHDDICRLL-EDECKD-----FKGAVRVKLWESHKAWATY 124          
BLAST of NO17G00710 vs. NCBI_GenBank
Match: XP_002179914.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48900.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 143.7 bits (361), Expect = 3.900e-31
Identity = 71/125 (56.80%), Postives = 80/125 (64.00%), Query Frame = 0
Query:    1 MIAHSF-KGEQFGPAQNVHGATYTVDVTFRSKALVPKCNWVVDIGEASTALGRILSKYNFKNLDEVFPEGENTTTEFMCKAIHGDLAKFFCTDRAKTGGGERFKGSICVKLWESHKAWACYEANV 125
            MIAHSF +   FGPA  +HGATYT DV F    L P  NWV+DIG+AS  L  +L+KYN KNLDEVFP G+ TTTEFMCK IH DL      +         F G +CVKLWESHKAWA Y   V
Sbjct:   37 MIAHSFHRHPAFGPAGGMHGATYTCDVEFSKDTLDPDTNWVMDIGKASELLCTVLAKYNLKNLDEVFPNGQLTTTEFMCKQIHMDLVDLIRRE------FHDFHGEVCVKLWESHKAWAAYSGVV 155          
BLAST of NO17G00710 vs. NCBI_GenBank
Match: EJK69264.1 (hypothetical protein THAOC_09485, partial [Thalassiosira oceanica])

HSP 1 Score: 132.9 bits (333), Expect = 7.000e-28
Identity = 66/124 (53.23%), Postives = 83/124 (66.94%), Query Frame = 0
Query:    1 MIAHSFKGE-QFGPAQNVHGATYTVDVTFRSKALVPKCNWVVDIGEASTALGRILSKYNFKNLDEVFPEGENTTTEFMCKAIHGDLAKFFCTDRAKTGGGE--RFKGSICVKLWESHKAWACYE 122
            MIAHSF G   FGPA  +HGATYTVDV F S+AL P+CNWV+DIG AS  +  +L KYN++NLD VF +   TTTEFMCK IH  + +     R    G +   F+G + V L+ESHKAWA ++
Sbjct:   95 MIAHSFHGHPSFGPAGGLHGATYTVDVEFASEALHPECNWVIDIGLASDLVADVLKKYNYQNLDVVFGKKIMTTTEFMCKEIHTRVVERLREKRQSEDGSDDNDFRGWVKVTLFESHKAWASFD 218          
BLAST of NO17G00710 vs. NCBI_GenBank
Match: XP_002289971.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED93508.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 132.9 bits (333), Expect = 7.000e-28
Identity = 65/122 (53.28%), Postives = 80/122 (65.57%), Query Frame = 0
Query:    1 MIAHSFKGE-QFGPAQNVHGATYTVDVTFRSKALVPKCNWVVDIGEASTALGRILSKYNFKNLDEVFPEGENTTTEFMCKAIHGDLAKFFCTDRAKTGGGERFKGSICVKLWESHKAWACYE 122
            MIAHSF     FGPA  +HGATYTVDV F S  L  +CNWV+DIG AS  +  +L++YN+KNLDEVF +   TTTEFMC+AI   + K    +R      + F+G I V LWESHKAW  +E
Sbjct:   68 MIAHSFHSHPSFGPAGGLHGATYTVDVEFASSTLHKECNWVIDIGVASAMVAEVLTEYNYKNLDEVFGDNVMTTTEFMCRAIFDGVVKKL-KERYSDIDVDHFEGWIKVTLWESHKAWGSFE 188          
BLAST of NO17G00710 vs. NCBI_GenBank
Match: XP_005706351.1 (6-pyruvoyl tetrahydropterin synthase [Galdieria sulphuraria] >EME29831.1 6-pyruvoyl tetrahydropterin synthase [Galdieria sulphuraria])

HSP 1 Score: 129.0 bits (323), Expect = 1.000e-26
Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 0
Query:    1 MIAHSFKGEQFGPAQNVHGATYTVDVTFRSKALVPKCNWVVDIGEASTALGRILSKYNFKNLDEVFP-EGENTTTEFMCKAIHGDLAKFFCTDRAKTGGGERFKGSICVKLWESHKAWACYEAN 124
            MIAHSF+GE FGPAQ +HGATYTVD  FRS  L P+ NWV+DIGEA+  L  +LS YN++NLD++   +G+NTTTE++ + IH  +       +AK  G   F+G + V L ES +AWA YE++
Sbjct:   11 MIAHSFQGEAFGPAQGLHGATYTVDCEFRSTNLQPQLNWVIDIGEATQILKDVLSLYNYRNLDQLEEFQGQNTTTEYLARVIHDKV-----LSKAKMLG---FQGILKVSLMESFRAWASYESD 126          
BLAST of NO17G00710 vs. NCBI_GenBank
Match: OSX70073.1 (hypothetical protein BU14_0930s0005 [Porphyra umbilicalis])

HSP 1 Score: 126.3 bits (316), Expect = 6.500e-26
Identity = 62/121 (51.24%), Postives = 82/121 (67.77%), Query Frame = 0
Query:    1 MIAHSFKGEQFGPAQNVHGATYTVDVTFRSKALVPKCNWVVDIGEASTALGRILSKYNFKNLDEVFP-EGENTTTEFMCKAIHGDLAKFFCTDRAKTGGGERFKGSICVKLWESHKAWACY 121
            MIAHSFKGE+FGPAQ  HGATYT+D  + +K LV   NWV++I +A+ AL  +++++N++NLDEV   +G+NTTTEF+  AIH  LAK              F G++ V L ESHKAWA Y
Sbjct:   12 MIAHSFKGEEFGPAQRTHGATYTIDAEWSAKELVSGVNWVLNIADAADALEAVVAEWNYRNLDEVAAFDGQNTTTEFLSHAIHSALAKRL----------PSFVGTLKVTLQESHKAWASY 122          
BLAST of NO17G00710 vs. NCBI_GenBank
Match: EJK72442.1 (hypothetical protein THAOC_06029, partial [Thalassiosira oceanica])

HSP 1 Score: 124.8 bits (312), Expect = 1.900e-25
Identity = 60/114 (52.63%), Postives = 76/114 (66.67%), Query Frame = 0
Query:    7 KGEQFGPAQNVHGATYTVDVTFRSKALVPKCNWVVDIGEASTALGRILSKYNFKNLDEVFPEGENTTTEFMCKAIHGDLAKFFCTDRAKTGGGE--RFKGSICVKLWESHKAWA 119
            +   FGPA  +HGATYTVDV F S+AL P+CNWV+DIG AS  +  +L KYN++NLDEVF +   TTTEFMCK IH  + +     R    G +   F+G + V L+ESHKAWA
Sbjct:   28 RASAFGPAGGLHGATYTVDVEFASEALHPECNWVIDIGLASDLVADVLKKYNYQNLDEVFGKKIMTTTEFMCKEIHTRVVERLREKRQSEDGSDDNDFRGWVKVTLFESHKAWA 141          
The following BLAST results are available for this feature:
BLAST of NO17G00710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005852675.12.500e-5787.10queuosine biosynthesis protein [Nannochloropsis ga... [more]
CBN79282.11.500e-3864.52conserved unknown protein [Ectocarpus siliculosus][more]
XP_005832052.11.700e-3459.68hypothetical protein GUITHDRAFT_152839 [Guillardia... [more]
OEU15600.14.700e-3258.68tetrahydrobiopterin biosynthesis enzymes-like prot... [more]
XP_002179914.13.900e-3156.80predicted protein [Phaeodactylum tricornutum CCAP ... [more]
EJK69264.17.000e-2853.23hypothetical protein THAOC_09485, partial [Thalass... [more]
XP_002289971.17.000e-2853.28predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_005706351.11.000e-2651.616-pyruvoyl tetrahydropterin synthase [Galdieria su... [more]
OSX70073.16.500e-2651.24hypothetical protein BU14_0930s0005 [Porphyra umbi... [more]
EJK72442.11.900e-2552.63hypothetical protein THAOC_06029, partial [Thalass... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004794NSK004794Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00710.1NO17G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600130gene_7814Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100108g17gene9271Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00710.1NO17G00710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00710 ID=NO17G00710|Name=NO17G00710|organism=Nannochloropsis oceanica|type=gene|length=375bp
ATGATTGCCCATTCCTTTAAAGGGGAGCAGTTCGGCCCGGCCCAAAACGT
GCACGGTGCGACCTACACCGTCGATGTCACATTCCGGAGCAAGGCTTTAG
TTCCGAAATGCAATTGGGTCGTGGATATCGGAGAGGCATCTACGGCTTTG
GGCCGCATTTTGAGTAAATACAATTTTAAGAATCTCGATGAGGTCTTCCC
GGAGGGGGAGAATACGACGACCGAGTTTATGTGTAAAGCCATCCATGGAG
ATTTGGCCAAGTTCTTCTGCACAGATCGAGCGAAGACGGGGGGAGGGGAG
AGGTTCAAGGGCTCGATTTGTGTAAAATTGTGGGAGAGTCATAAGGCATG
GGCATGTTATGAGGCGAACGTTTGA
back to top

protein sequence of NO17G00710.1

>NO17G00710.1-protein ID=NO17G00710.1-protein|Name=NO17G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MIAHSFKGEQFGPAQNVHGATYTVDVTFRSKALVPKCNWVVDIGEASTAL
GRILSKYNFKNLDEVFPEGENTTTEFMCKAIHGDLAKFFCTDRAKTGGGE
RFKGSICVKLWESHKAWACYEANV*
back to top
Synonyms
Publications