NO17G00710.1, NO17G00710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00710.1
Unique NameNO17G00710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length375
Alignment locationchr17:252823..253197 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:252823..253197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G00710.1 vs.
Match: XP_005852675.1 (queuosine biosynthesis protein [Nannochloropsis gaditana CCMP526]; EKU23153.1 queuosine biosynthesis protein [Nannochloropsis gaditana CCMP526]; EWM21157.1 6-pyruvoyl tetrahydropterin synthase/QueD family protein [Nannochloropsis gaditana])

HSP 1 Score: 230.7 bits (587), Expect = 2.500e-57
Identity = 108/124 (87.10%), Postives = 114/124 (91.94%), Query Frame = 0 
Query:    1 MIAHSFKGEQFGPAQNVHGATYTVDVTFRSKALVPKCNWVVDIGEASTALGRILSKYNFKNLDEVFPEGENTTTEFMCKAIHGDLAKFFCTDRAKTGGGERFKGSICVKLWESHKAWACYEANV 125
            MIAHSFKGEQFGPAQN+HGATYTVDVTFRSK LVPK NWV+DIGEASTAL RILSKYNFKNLD+VFPEGENTTTEFMC+AIH DLA  FCT+RAK+   ERFKGSICVKLWESHKAWACYEA V
Sbjct:   42 MIAHSFKGEQFGPAQNIHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNFKNLDQVFPEGENTTTEFMCRAIHRDLAAHFCTNRAKS-KEERFKGSICVKLWESHKAWACYEAIV 164
The following BLAST results are available for this feature:
BLAST of NO17G00710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852675.12.500e-5787.10queuosine biosynthesis protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00710NO17G00710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00710.1NO17G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00710.1.cds1NO17G00710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00710.1 ID=NO17G00710.1|Name=NO17G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=375bp
ATGATTGCCCATTCCTTTAAAGGGGAGCAGTTCGGCCCGGCCCAAAACGT
GCACGGTGCGACCTACACCGTCGATGTCACATTCCGGAGCAAGGCTTTAG
TTCCGAAATGCAATTGGGTCGTGGATATCGGAGAGGCATCTACGGCTTTG
GGCCGCATTTTGAGTAAATACAATTTTAAGAATCTCGATGAGGTCTTCCC
GGAGGGGGAGAATACGACGACCGAGTTTATGTGTAAAGCCATCCATGGAG
ATTTGGCCAAGTTCTTCTGCACAGATCGAGCGAAGACGGGGGGAGGGGAG
AGGTTCAAGGGCTCGATTTGTGTAAAATTGTGGGAGAGTCATAAGGCATG
GGCATGTTATGAGGCGAACGTTTGA
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protein sequence of NO17G00710.1

>NO17G00710.1-protein ID=NO17G00710.1-protein|Name=NO17G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MIAHSFKGEQFGPAQNVHGATYTVDVTFRSKALVPKCNWVVDIGEASTAL
GRILSKYNFKNLDEVFPEGENTTTEFMCKAIHGDLAKFFCTDRAKTGGGE
RFKGSICVKLWESHKAWACYEANV*
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mRNA from alignment at chr17:252823..253197-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00710.1 ID=NO17G00710.1|Name=NO17G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=375bp|location=Sequence derived from alignment at chr17:252823..253197- (Nannochloropsis oceanica)
ATGATTGCCCATTCCTTTAAAGGGGAGCAGTTCGGCCCGGCCCAAAACGT
GCACGGTGCGACCTACACCGTCGATGTCACATTCCGGAGCAAGGCTTTAG
TTCCGAAATGCAATTGGGTCGTGGATATCGGAGAGGCATCTACGGCTTTG
GGCCGCATTTTGAGTAAATACAATTTTAAGAATCTCGATGAGGTCTTCCC
GGAGGGGGAGAATACGACGACCGAGTTTATGTGTAAAGCCATCCATGGAG
ATTTGGCCAAGTTCTTCTGCACAGATCGAGCGAAGACGGGGGGAGGGGAG
AGGTTCAAGGGCTCGATTTGTGTAAAATTGTGGGAGAGTCATAAGGCATG
GGCATGTTATGAGGCGAACGTTTGA
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Coding sequence (CDS) from alignment at chr17:252823..253197-

>NO17G00710.1 ID=NO17G00710.1|Name=NO17G00710.1|organism=Nannochloropsis oceanica|type=CDS|length=375bp|location=Sequence derived from alignment at chr17:252823..253197- (Nannochloropsis oceanica)
ATGATTGCCCATTCCTTTAAAGGGGAGCAGTTCGGCCCGGCCCAAAACGT
GCACGGTGCGACCTACACCGTCGATGTCACATTCCGGAGCAAGGCTTTAG
TTCCGAAATGCAATTGGGTCGTGGATATCGGAGAGGCATCTACGGCTTTG
GGCCGCATTTTGAGTAAATACAATTTTAAGAATCTCGATGAGGTCTTCCC
GGAGGGGGAGAATACGACGACCGAGTTTATGTGTAAAGCCATCCATGGAG
ATTTGGCCAAGTTCTTCTGCACAGATCGAGCGAAGACGGGGGGAGGGGAG
AGGTTCAAGGGCTCGATTTGTGTAAAATTGTGGGAGAGTCATAAGGCATG
GGCATGTTATGAGGCGAACGTTTGA
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Synonyms
Publications