NO17G00660, NO17G00660 (gene) Nannochloropsis oceanica

Overview
NameNO17G00660
Unique NameNO17G00660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2841
Alignment locationchr17:232804..235644 -

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Properties
Property NameValue
DescriptionAnkyrin repeat protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:232804..235644 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
[Close]
BLAST of NO17G00660 vs. NCBI_GenBank
Match: EWM21159.1 (ankyrin repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 278.5 bits (711), Expect = 4.800e-71
Identity = 248/505 (49.11%), Postives = 287/505 (56.83%), Query Frame = 0 
Query:    1 MDDVEAVGHRIHDAAKKGSIEKVAKLLKQYPQLVNDKGEDGWTPLFRACYNNRLDLVKFLAEHGANLGRDADDFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPTIVCKEGKAPLDVVCEAGYRGEHRLVIEALLQDRPEPTVLPPRSVRVPVGVEEGEVGGNAGGEGAKGGGRHHQHTYANTLEAHARGHRAINSCLPAGSPLVLSPGGGGXXXXXXXXXXXXXXXXXXXXXXXXPPYTEDRVGNRIYFPWEMTSGDYVLRALGLTREILMQLFRQAVEEGTLSDLPVVGPCGSKSAF-RTYLDAFDLLVMAIEREKELENYLEAKRKKEMVERKEGGKEPGEEGKAPDVRCRGVGADVDGGKSLQQ--------------LKERLEGLGQTLALQSSPTHHSSREEVSLLLGSLREFAAQVHLPEMAEDVHSLLEQYYTHSESKSLRLRLLRVSQIRGTLEGHERVSAGVPC 491
            MDDV  V HRIHDAAKKG I+ VAKLL  YPQLVNDKGEDGWTPLFRACYNN L+L K+LAE+GANLGRDA    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +I CKEGK  L VVCEAGYRGEHR  I ALLQ+ PEPT                                               GH A+ S    G  + +   G                          PPYTED  G R YFPWE+ S DY  RA GL R +L ++  + VE G L+ LPV         F + ++D FDLL  A++  + LE ++  K+ +    R    K   +E    +V       + D   SL +              L ERL+ LG   ++Q +P HH  R E   LL  L   A ++   ++AE VHSLL QY++HSESKSLRLRLLRVSQIRG LEGHERVS    C
Sbjct:    1 MDDVRRVSHRIHDAAKKGRIDDVAKLLADYPQLVNDKGEDGWTPLFRACYNNHLELAKYLAENGANLGRDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIACKEGKTALHVVCEAGYRGEHRPTIMALLQNLPEPT-------EAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHLALKSSSSEGGKMEIGVAG-------------------------PPPYTEDGSGKRTYFPWELGSADYAWRAAGLCRGMLTRVLAEVVETGRLAALPVEATVRKGKEFEKPFVDVFDLLEAAMQVAETLETFVHEKKGEVGGRRPATTKGNDKEKAGGEVERAAANGEDDADLSLSRCSLDCNQDEGATMPLGERLKLLGIAFSIQLNPAHHPQRGETGALLACLYTVATRLSQEDVAERVHSLLAQYHSHSESKSLRLRLLRVSQIRGPLEGHERVSRRAAC 473
[Close]
BLAST of NO17G00660 vs. NCBI_GenBank
Match: XP_005854802.1 (ankyrin repeat protein [Nannochloropsis gaditana CCMP526] >EKU21558.1 ankyrin repeat protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 136.3 bits (342), Expect = 2.900e-28
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 0 
Query:    1 MDDVEAVGHRIHDAAKKGSIEKVAKLLKQYPQLVNDKGEDGWTPLFRACYNNRLDLVKFLAEHGANLGRDADDFQ 76
            MDDV  V HRIHDAAKKG I+ VAKLL  YPQLVNDKGEDGWTPLFRACYNN L+L K+LAE+GANLGRDADDFQ
Sbjct:    1 MDDVRRVSHRIHDAAKKGRIDDVAKLLADYPQLVNDKGEDGWTPLFRACYNNHLELAKYLAENGANLGRDADDFQ 75
[Close]
BLAST of NO17G00660 vs. NCBI_GenBank
Match: XP_017786257.1 (PREDICTED: ankyrin repeat domain-containing protein 49-like [Nicrophorus vespilloides])

HSP 1 Score: 67.8 bits (164), Expect = 1.300e-7
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 0 
Query:    5 EAVGHRIHDAAKKGSIEKVAKLLKQYPQLVNDKGEDGWTPLFRACYNNRLDLVKFLAEHGANLG 69
            E V   I  AA++G +EK+ +LLK +P LV+ K +DG+TPL RACY N L++V +L + GA++G
Sbjct:   29 ETVEKEILWAAEEGKLEKLKELLKAHPNLVHYKDKDGYTPLHRACYANHLEIVDYLLKMGADIG 92
[Close]
BLAST of NO17G00660 vs. NCBI_GenBank
Match: ERL92603.1 (hypothetical protein D910_09916 [Dendroctonus ponderosae])

HSP 1 Score: 67.0 bits (162), Expect = 2.200e-7
Identity = 27/55 (49.09%), Postives = 41/55 (74.55%), Query Frame = 0 
Query:   13 DAAKKGSIEKVAKLLKQYPQLVNDKGEDGWTPLFRACYNNRLDLVKFLAEHGANL 68
            +AA KG +E V +++ + P L+N    D +TPL RACY+N++D+VK+L EHGA+L
Sbjct:   33 EAAGKGKLEVVTEIISRNPNLINATDADQYTPLHRACYSNKVDIVKYLVEHGADL 87
[Close]
BLAST of NO17G00660 vs. NCBI_GenBank
Match: KPM04622.1 (ankyrin repeat domain containing protein 14 [Sarcoptes scabiei])

HSP 1 Score: 66.6 bits (161), Expect = 2.900e-7
Identity = 27/55 (49.09%), Postives = 42/55 (76.36%), Query Frame = 0 
Query:   13 DAAKKGSIEKVAKLLKQYPQLVNDKGEDGWTPLFRACYNNRLDLVKFLAEHGANL 68
            +AA+KG +  + +  +  PQL+N +  DG++PL RACYNNR+D+VK+L +HGAN+
Sbjct:   56 EAAEKGRLNLLKQFYQIDPQLINIQDSDGYSPLHRACYNNRIDVVKWLIKHGANI 110
[Close]
BLAST of NO17G00660 vs. NCBI_GenBank
Match: XP_019769919.1 (PREDICTED: ankyrin repeat domain-containing protein 49-like isoform X1 [Dendroctonus ponderosae] >ENN71424.1 hypothetical protein YQE_11844, partial [Dendroctonus ponderosae])

HSP 1 Score: 66.2 bits (160), Expect = 3.700e-7
Identity = 27/55 (49.09%), Postives = 41/55 (74.55%), Query Frame = 0 
Query:   13 DAAKKGSIEKVAKLLKQYPQLVNDKGEDGWTPLFRACYNNRLDLVKFLAEHGANL 68
            +AA KG +E V +++ + P L+N    D +TPL RACY+N++D+VK+L EHGA+L
Sbjct:   33 EAAGKGRLEVVKEIISRNPNLINATDADQYTPLHRACYSNKVDIVKYLVEHGADL 87
[Close]
BLAST of NO17G00660 vs. NCBI_GenBank
Match: XP_019769920.1 (PREDICTED: ankyrin repeat domain-containing protein 49-like isoform X2 [Dendroctonus ponderosae])

HSP 1 Score: 66.2 bits (160), Expect = 3.700e-7
Identity = 27/55 (49.09%), Postives = 41/55 (74.55%), Query Frame = 0 
Query:   13 DAAKKGSIEKVAKLLKQYPQLVNDKGEDGWTPLFRACYNNRLDLVKFLAEHGANL 68
            +AA KG +E V +++ + P L+N    D +TPL RACY+N++D+VK+L EHGA+L
Sbjct:   33 EAAGKGRLEVVKEIISRNPNLINATDADQYTPLHRACYSNKVDIVKYLVEHGADL 87
[Close]
BLAST of NO17G00660 vs. NCBI_GenBank
Match: XP_019769921.1 (PREDICTED: ankyrin repeat domain-containing protein 49-like isoform X3 [Dendroctonus ponderosae])

HSP 1 Score: 66.2 bits (160), Expect = 3.700e-7
Identity = 27/55 (49.09%), Postives = 41/55 (74.55%), Query Frame = 0 
Query:   13 DAAKKGSIEKVAKLLKQYPQLVNDKGEDGWTPLFRACYNNRLDLVKFLAEHGANL 68
            +AA KG +E V +++ + P L+N    D +TPL RACY+N++D+VK+L EHGA+L
Sbjct:   33 EAAGKGRLEVVKEIISRNPNLINATDADQYTPLHRACYSNKVDIVKYLVEHGADL 87
[Close]
BLAST of NO17G00660 vs. NCBI_GenBank
Match: XP_023026468.1 (ankyrin repeat domain-containing protein 49-like [Leptinotarsa decemlineata])

HSP 1 Score: 66.2 bits (160), Expect = 3.700e-7
Identity = 26/59 (44.07%), Postives = 43/59 (72.88%), Query Frame = 0 
Query:    9 HRIHDAAKKGSIEKVAKLLKQYPQLVNDKGEDGWTPLFRACYNNRLDLVKFLAEHGANL 68
            H+I +A + G++E V  L++ +P L+N   +D +TPL RACY+N +D+VK+L + GAN+
Sbjct:   30 HQILEACENGNLETVKHLIETHPNLINATDKDKYTPLHRACYSNHIDIVKYLIQKGANV 88
The following BLAST results are available for this feature:
BLAST of NO17G00660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 9
Match NameE-valueIdentityDescription
EWM21159.14.800e-7149.11ankyrin repeat protein [Nannochloropsis gaditana][more]
XP_005854802.12.900e-2882.67ankyrin repeat protein [Nannochloropsis gaditana C... [more]
XP_017786257.11.300e-748.44PREDICTED: ankyrin repeat domain-containing protei... [more]
ERL92603.12.200e-749.09hypothetical protein D910_09916 [Dendroctonus pond... [more]
KPM04622.12.900e-749.09ankyrin repeat domain containing protein 14 [Sarco... [more]
XP_019769919.13.700e-749.09PREDICTED: ankyrin repeat domain-containing protei... [more]
XP_019769920.13.700e-749.09PREDICTED: ankyrin repeat domain-containing protei... [more]
XP_019769921.13.700e-749.09PREDICTED: ankyrin repeat domain-containing protei... [more]
XP_023026468.13.700e-744.07ankyrin repeat domain-containing protein 49-like [... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004785NSK004785Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00660.2NO17G00660.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G00660.1NO17G00660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|545709gene_7819Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100108g11gene9265Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00660.2NO17G00660.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G00660.1NO17G00660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00660 ID=NO17G00660|Name=NO17G00660|organism=Nannochloropsis oceanica|type=gene|length=2841bp
GACAGACAGGCGGGGGAAAAGCATCACGGGAGACAAGTGCGGGCAAAAAC
TACAAAAGGTAAGGCCGCGCCAATGTTTCCGCCGCATTTACACCATATAT
GTCGCCGTCTCACAAGCCCTACATGGCCACAGACAATGCCTATGCACGCG
GAGCTGTGCTTCTGTCCTCCATATCTTTTTGTTCGTTCAGGATCGTCATG
GGGTGTGCATCTTGCGTCATTTCCCACCCCTCAAGCGTGCCCCACGCAGC
GCTCCCCCAGTACATGATGTAGAAGCCTGATATTTGCTCGTACATGTAAT
TATGTCGGACTTGCCCGATACAATCGGTCTGTGACTTTTGTCCACATATT
TCTCCACTACACACCCCTTCAATTTGCACAAATAGAACAGAGGCAACAAA
ATGGATGACGTCGAGGCAGTGGGCCATCGCATCCACGATGCAGCCAAGAA
AGGATCGATTGAGAAGGTGGCGAAGCTTCTAAAACAGTATCCCCAGTTGG
TGAATGACAAGgtaggtgggtggtaggggacaggaaggaggagactagga
gcgagggaacgagaaaggagagagtggaggattccatgattcacgttttg
ctggcttctccattagctgtgacccttctgtcactcgttgtgctaatttg
gaaatccatactcaatcacacgcacacacacactaacacgcacatatgta
cctgtcacctccctccctttctcctccttccctttctttcttccctgcct
agGGGGAAGACGGGTGGACGCCGCTATTCCGTGCCTGCTACAATAACCGC
CTTGATCTGGTAAAATTTCTGGCAGAGCACGGGGCCAACTTAGGGCGGGA
TGCCGATGATTTCCAGAACACGGCCCTGCACGCATGTTGCATCAATGGGC
ATAGGGAAGTGGCAGAGTATTTGCTGACAAAAGGGGTGAATGTGAACTGC
CACGATAACGTGGGGGGATGGACCCCTGTGTACGCTGCTTCATTTTTTGG
GTGGCCGGATCTTGTGAGGTTTTTATTGAAAAATGGGGCGGATCCGACGA
TCGTCTGTAAGGAGGGGAAGGCTCCGCTGGACGTGGTGTGCGAGGCAGGG
TACCGTGGCGAACATCGCTTGGTGATCGAGGCACTGCTGCAGGACAGGCC
GGAACCAACTGTGTTGCCTCCGCGAAGCGTGAGGGTGCCGGTTGGGGTGG
AAGAAGGGGAAGTAGGGGGAAATGCAGGGGGGGAAGGGGCGAAGGGAGGG
GGGAGGCATCACCAGCATACTTACGCGAATACGCTGGAGGCACACGCGAG
GGGGCATAGGGCGATAAACAGTTGTTTGCCCGCTGGTTCTCCTCTTGTGC
TCTCTCCTGGTGGTGGGGGCATGGGCGGAGGAAGGGGCGGAGGGGTTGGT
GGAGGAGGAGTGGGAGGAGCGGCGGGGGGGGTTGCGGGGCCTCCCCCGTA
CACGGAAGATAGGGTGGGGAACCGAATTTATTTTCCTTGGGAGATGACAA
GCGGCGACTACGTTTTAAGGGCCTTGGGACTAACGAGGGAGATTTTGATG
CAGCTTTTTCGACAGGCGGTGGAAGAAGGGACGTTATCGGACCTGCCTGT
GGTGGGGCCTTGTGGGAGCAAGAGTGCGTTTAGGACTTACTTGGACGCCT
TTGATTTGCTGGTGATGGCGATAGAGCGTGAGAAAGAGTTGGAGAATTAT
TTGGAGGCGAAGAGGAAGAAGGAGATGGTGGAGAGGAAGGAGGGGGGAAA
GGAGCCAGGGGAGGAGGGGAAGGCTCCGGATGTGAGGTGTCGTGGCGTGG
GGGCGGATGTGGATGGAGGTAAATCGTTACAGCAATTGAAGGAGCGGTTA
GAAGGCTTGGGACAAACGTTGGCTTTGCAGAGTTCCCCTACTCACCATTC
CAGCCGGGAAGAAGTTAGTTTGCTTTTGGGGAGTCTGCGTGAGTTCGCTG
CTCAGGTCCATCTACCGGAGATGGCAGAGGATGTCCATTCGTTGCTGGAG
CAGTATTACACGCATTCGGAAAGTAAGAGCTTGCGGCTGCGATTGTTGAG
GGTGAGTCAGATTCGAGGGACGTTGGAAGGGCATGAGCGGGTCTCAGCGG
GGGTGCCTTGTCTTGCATTGAGCGATGGGCGTGGAGGAGGAGGAGCTGGA
GGAGAAGGGGAGAGTGGAAATGAGGTGGGAGGACAGGCGAGGAATGGTAG
TGGTGATAACGATCGCAGTAGTGGAAGTGGGGGGGCAGGGAGTTCCTCGG
TGCTGGGCGCAAGGGTGAGCAGCGGATTCAGCCCCGTGGGGGGGGGGGAG
GGCAAGGAGGGGCGGGTGAAGGGGAGTTTACGAGGGCGGAGGAAAAGGAA
CGGAGCAAGAAGGAGTTTTTGGAGCGATACAAGTTTCTGAAGGAGCACAC
GGAGGATTTGGTGCTGAATGATGATGTATGAGATGCAGTTGAGAGAAGAC
GTGAGAGAGGAGAAAATCTGTGGGTGTGGTAAAGTTTGGAAGACGGGCCA
TGGAAGAGGAACGAGGAAAAATAGGTAAAGGAGCAAGGAATAGCGACGAA
AAAGAATGATTCATTACAATTTCACAAAAATGTAACCATCAAATCAGAAA
GAAGAAACAATCACCCATAAACTTGCTGATGCGCAGTGTTCCTTTCTGTC
TCCGACTTTTGATTTTTTTAGGGCATCAAAAGCCACACCAGCTTGTGTAC
AAATGGTATCGTAATGGGAGCCGGTGGACGATGGCTTTTGAGTGACAAGC
GTAAACTGCTCAGCCATCGTCCGGATTTCTTGCCTGATTTTTATGCAGCC
TCTCCTTCTCTACCCCTCCCTCCCTCCTCTCCATCCCTCCC
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protein sequence of NO17G00660.2

>NO17G00660.2-protein ID=NO17G00660.2-protein|Name=NO17G00660.2|organism=Nannochloropsis oceanica|type=polypeptide|length=583bp
MDDVEAVGHRIHDAAKKGSIEKVAKLLKQYPQLVNDKGEDGWTPLFRACY
NNRLDLVKFLAEHGANLGRDADDFQNTALHACCINGHREVAEYLLTKGVN
VNCHDNVGGWTPVYAASFFGWPDLVRFLLKNGADPTIVCKEGKAPLDVVC
EAGYRGEHRLVIEALLQDRPEPTVLPPRSVRVPVGVEEGEVGGNAGGEGA
KGGGRHHQHTYANTLEAHARGHRAINSCLPAGSPLVLSPGGGGMGGGRGG
GVGGGGVGGAAGGVAGPPPYTEDRVGNRIYFPWEMTSGDYVLRALGLTRE
ILMQLFRQAVEEGTLSDLPVVGPCGSKSAFRTYLDAFDLLVMAIEREKEL
ENYLEAKRKKEMVERKEGGKEPGEEGKAPDVRCRGVGADVDGGKSLQQLK
ERLEGLGQTLALQSSPTHHSSREEVSLLLGSLREFAAQVHLPEMAEDVHS
LLEQYYTHSESKSLRLRLLRVSQIRGTLEGHERVSAGVPCLALSDGRGGG
GAGGEGESGNEVGGQARNGSGDNDRSSGSGGAGSSSVLGARVSSGFSPVG
GGEGKEGRVKGSLRGRRKRNGARRSFWSDTSF*
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protein sequence of NO17G00660.1

>NO17G00660.1-protein ID=NO17G00660.1-protein|Name=NO17G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=583bp
MDDVEAVGHRIHDAAKKGSIEKVAKLLKQYPQLVNDKGEDGWTPLFRACY
NNRLDLVKFLAEHGANLGRDADDFQNTALHACCINGHREVAEYLLTKGVN
VNCHDNVGGWTPVYAASFFGWPDLVRFLLKNGADPTIVCKEGKAPLDVVC
EAGYRGEHRLVIEALLQDRPEPTVLPPRSVRVPVGVEEGEVGGNAGGEGA
KGGGRHHQHTYANTLEAHARGHRAINSCLPAGSPLVLSPGGGGMGGGRGG
GVGGGGVGGAAGGVAGPPPYTEDRVGNRIYFPWEMTSGDYVLRALGLTRE
ILMQLFRQAVEEGTLSDLPVVGPCGSKSAFRTYLDAFDLLVMAIEREKEL
ENYLEAKRKKEMVERKEGGKEPGEEGKAPDVRCRGVGADVDGGKSLQQLK
ERLEGLGQTLALQSSPTHHSSREEVSLLLGSLREFAAQVHLPEMAEDVHS
LLEQYYTHSESKSLRLRLLRVSQIRGTLEGHERVSAGVPCLALSDGRGGG
GAGGEGESGNEVGGQARNGSGDNDRSSGSGGAGSSSVLGARVSSGFSPVG
GGEGKEGRVKGSLRGRRKRNGARRSFWSDTSF*
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Synonyms
Publications