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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr17 | genome | chr17:232804..235644 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G00660.1 vs.
Match: EWM21159.1 (ankyrin repeat protein [Nannochloropsis gaditana]) HSP 1 Score: 467.6 bits (1202), Expect = 5.600e-128 Identity = 293/602 (48.67%), Postives = 351/602 (58.31%), Query Frame = 0
Query: 1 MDDVEAVGHRIHDAAKKGSIEKVAKLLKQYPQLVNDKGEDGWTPLFRACYNNRLDLVKFLAEHGANLGRDADDFQNTALHACCINGHREVAEYLLTKGVNVNCHDNVGGWTPVYAASFFGWPDLVRFLLKNGADPTIVCKEGKAPLDVVCEAGYRGEHRLVIEALLQDRPEPTVLPPRSVRVPVGVEEGEVGGNAGGEGAKGGG----RHHQHTYANTLEAHARGHRAINSCLPAGSPLVLSPGGGGMGGGRGGGVGGGGVGGAAGGVAGPPPYTEDRVGNRIYFPWEMTSGDYVLRALGLTREILMQLFRQAVEEGTLSDLPVVGPCGSKSAF-RTYLDAFDLLVMAIEREKELENYLEAKRKKEMVERKEGGKEPGEEGKAPDVRCRGVGADVDGGKSLQQ--------------LKERLEGLGQTLALQSSPTHHSSREEVSLLLGSLREFAAQVHLPEMAEDVHSLLEQYYTHSESKSLRLRLLRVSQIRGTLEGHERVSAGVPCLALSDGRGGGGAGGEGESGNEVGGQARNGSGDNDRSSGSGGAGSSSVLGARVSSGFSPVG-GGEGKEGRVKGSLRGRRKRNGARRSFWSDTSF 583
MDDV V HRIHDAAKKG I+ VAKLL YPQLVNDKGEDGWTPLFRACYNN L+L K+LAE+GANLGRDADDFQNTALHACCINGHR+VAE+LLTKGV+VN HDNVGGWTP+YAASFF WP+LVR LL+ GADP+I CKEGK L VVCEAGYRGEHR I ALLQ+ PEPT PR R G GEG + GG RHHQH Y +LEA ARGH A+ S G + + GVAGPPPYTED G R YFPWE+ S DY RA GL R +L ++ + VE G L+ LPV F + ++D FDLL A++ + LE ++ K+ + R K +E +V + D SL + L ERL+ LG ++Q +P HH R E LL L A ++ ++AE VHSLL QY++HSESKSLRLRLLRVSQIRG LEGHERVS C G +G + R S S AG+ V G +S GFSPVG GG+G E + + L +R ++R + F
Sbjct: 1 MDDVRRVSHRIHDAAKKGRIDDVAKLLADYPQLVNDKGEDGWTPLFRACYNNHLELAKYLAENGANLGRDADDFQNTALHACCINGHRQVAEFLLTKGVDVNDHDNVGGWTPLYAASFFAWPELVRLLLEKGADPSIACKEGKTALHVVCEAGYRGEHRPTIMALLQNLPEPTEARPRDGR----------GRGHRGEGEREGGRTSHRHHQH-YHQSLEAQARGHLALKSSSSEGGKMEI-------------------------GVAGPPPYTEDGSGKRTYFPWELGSADYAWRAAGLCRGMLTRVLAEVVETGRLAALPVEATVRKGKEFEKPFVDVFDLLEAAMQVAETLETFVHEKKGEVGGRRPATTKGNDKEKAGGEVERAAANGEDDADLSLSRCSLDCNQDEGATMPLGERLKLLGIAFSIQLNPAHHPQRGETGALLACLYTVATRLSQEDVAERVHSLLAQYHSHSESKSLRLRLLRVSQIRGPLEGHERVSRRAAC-------PGEDTDPLISTGKDAQRSERRRSASCSSSESKDSAGAGMVGG--LSGGFSPVGRGGDGGE-KGERMLARAEERERSKREYLEQFKF 556
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G00660.1 ID=NO17G00660.1|Name=NO17G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2273bp
GACAGACAGGCGGGGGAAAAGCATCACGGGAGACAAGTGCGGGCAAAAAC
TACAAAAGAACAGAGGCAACAAAATGGATGACGTCGAGGCAGTGGGCCAT
CGCATCCACGATGCAGCCAAGAAAGGATCGATTGAGAAGGTGGCGAAGCT
TCTAAAACAGTATCCCCAGTTGGTGAATGACAAGGGGGAAGACGGGTGGA
CGCCGCTATTCCGTGCCTGCTACAATAACCGCCTTGATCTGGTAAAATTT
CTGGCAGAGCACGGGGCCAACTTAGGGCGGGATGCCGATGATTTCCAGAA
CACGGCCCTGCACGCATGTTGCATCAATGGGCATAGGGAAGTGGCAGAGT
ATTTGCTGACAAAAGGGGTGAATGTGAACTGCCACGATAACGTGGGGGGA
TGGACCCCTGTGTACGCTGCTTCATTTTTTGGGTGGCCGGATCTTGTGAG
GTTTTTATTGAAAAATGGGGCGGATCCGACGATCGTCTGTAAGGAGGGGA
AGGCTCCGCTGGACGTGGTGTGCGAGGCAGGGTACCGTGGCGAACATCGC
TTGGTGATCGAGGCACTGCTGCAGGACAGGCCGGAACCAACTGTGTTGCC
TCCGCGAAGCGTGAGGGTGCCGGTTGGGGTGGAAGAAGGGGAAGTAGGGG
GAAATGCAGGGGGGGAAGGGGCGAAGGGAGGGGGGAGGCATCACCAGCAT
ACTTACGCGAATACGCTGGAGGCACACGCGAGGGGGCATAGGGCGATAAA
CAGTTGTTTGCCCGCTGGTTCTCCTCTTGTGCTCTCTCCTGGTGGTGGGG
GCATGGGCGGAGGAAGGGGCGGAGGGGTTGGTGGAGGAGGAGTGGGAGGA
GCGGCGGGGGGGGTTGCGGGGCCTCCCCCGTACACGGAAGATAGGGTGGG
GAACCGAATTTATTTTCCTTGGGAGATGACAAGCGGCGACTACGTTTTAA
GGGCCTTGGGACTAACGAGGGAGATTTTGATGCAGCTTTTTCGACAGGCG
GTGGAAGAAGGGACGTTATCGGACCTGCCTGTGGTGGGGCCTTGTGGGAG
CAAGAGTGCGTTTAGGACTTACTTGGACGCCTTTGATTTGCTGGTGATGG
CGATAGAGCGTGAGAAAGAGTTGGAGAATTATTTGGAGGCGAAGAGGAAG
AAGGAGATGGTGGAGAGGAAGGAGGGGGGAAAGGAGCCAGGGGAGGAGGG
GAAGGCTCCGGATGTGAGGTGTCGTGGCGTGGGGGCGGATGTGGATGGAG
GTAAATCGTTACAGCAATTGAAGGAGCGGTTAGAAGGCTTGGGACAAACG
TTGGCTTTGCAGAGTTCCCCTACTCACCATTCCAGCCGGGAAGAAGTTAG
TTTGCTTTTGGGGAGTCTGCGTGAGTTCGCTGCTCAGGTCCATCTACCGG
AGATGGCAGAGGATGTCCATTCGTTGCTGGAGCAGTATTACACGCATTCG
GAAAGTAAGAGCTTGCGGCTGCGATTGTTGAGGGTGAGTCAGATTCGAGG
GACGTTGGAAGGGCATGAGCGGGTCTCAGCGGGGGTGCCTTGTCTTGCAT
TGAGCGATGGGCGTGGAGGAGGAGGAGCTGGAGGAGAAGGGGAGAGTGGA
AATGAGGTGGGAGGACAGGCGAGGAATGGTAGTGGTGATAACGATCGCAG
TAGTGGAAGTGGGGGGGCAGGGAGTTCCTCGGTGCTGGGCGCAAGGGTGA
GCAGCGGATTCAGCCCCGTGGGGGGGGGGGAGGGCAAGGAGGGGCGGGTG
AAGGGGAGTTTACGAGGGCGGAGGAAAAGGAACGGAGCAAGAAGGAGTTT
TTGGAGCGATACAAGTTTCTGAAGGAGCACACGGAGGATTTGGTGCTGAA
TGATGATGTATGAGATGCAGTTGAGAGAAGACGTGAGAGAGGAGAAAATC
TGTGGGTGTGGTAAAGTTTGGAAGACGGGCCATGGAAGAGGAACGAGGAA
AAATAGGTAAAGGAGCAAGGAATAGCGACGAAAAAGAATGATTCATTACA
ATTTCACAAAAATGTAACCATCAAATCAGAAAGAAGAAACAATCACCCAT
AAACTTGCTGATGCGCAGTGTTCCTTTCTGTCTCCGACTTTTGATTTTTT
TAGGGCATCAAAAGCCACACCAGCTTGTGTACAAATGGTATCGTAATGGG
AGCCGGTGGACGATGGCTTTTGAGTGACAAGCGTAAACTGCTCAGCCATC
GTCCGGATTTCTTGCCTGATTTTTATGCAGCCTCTCCTTCTCTACCCCTC
CCTCCCTCCTCTCCATCCCTCCC back to topprotein sequence of NO17G00660.1 >NO17G00660.1-protein ID=NO17G00660.1-protein|Name=NO17G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=583bp
MDDVEAVGHRIHDAAKKGSIEKVAKLLKQYPQLVNDKGEDGWTPLFRACY
NNRLDLVKFLAEHGANLGRDADDFQNTALHACCINGHREVAEYLLTKGVN
VNCHDNVGGWTPVYAASFFGWPDLVRFLLKNGADPTIVCKEGKAPLDVVC
EAGYRGEHRLVIEALLQDRPEPTVLPPRSVRVPVGVEEGEVGGNAGGEGA
KGGGRHHQHTYANTLEAHARGHRAINSCLPAGSPLVLSPGGGGMGGGRGG
GVGGGGVGGAAGGVAGPPPYTEDRVGNRIYFPWEMTSGDYVLRALGLTRE
ILMQLFRQAVEEGTLSDLPVVGPCGSKSAFRTYLDAFDLLVMAIEREKEL
ENYLEAKRKKEMVERKEGGKEPGEEGKAPDVRCRGVGADVDGGKSLQQLK
ERLEGLGQTLALQSSPTHHSSREEVSLLLGSLREFAAQVHLPEMAEDVHS
LLEQYYTHSESKSLRLRLLRVSQIRGTLEGHERVSAGVPCLALSDGRGGG
GAGGEGESGNEVGGQARNGSGDNDRSSGSGGAGSSSVLGARVSSGFSPVG
GGEGKEGRVKGSLRGRRKRNGARRSFWSDTSF* back to topmRNA from alignment at chr17:232804..235644- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G00660.1 ID=NO17G00660.1|Name=NO17G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2841bp|location=Sequence derived from alignment at chr17:232804..235644- (Nannochloropsis oceanica)
GACAGACAGGCGGGGGAAAAGCATCACGGGAGACAAGTGCGGGCAAAAAC
TACAAAAGGTAAGGCCGCGCCAATGTTTCCGCCGCATTTACACCATATAT
GTCGCCGTCTCACAAGCCCTACATGGCCACAGACAATGCCTATGCACGCG
GAGCTGTGCTTCTGTCCTCCATATCTTTTTGTTCGTTCAGGATCGTCATG
GGGTGTGCATCTTGCGTCATTTCCCACCCCTCAAGCGTGCCCCACGCAGC
GCTCCCCCAGTACATGATGTAGAAGCCTGATATTTGCTCGTACATGTAAT
TATGTCGGACTTGCCCGATACAATCGGTCTGTGACTTTTGTCCACATATT
TCTCCACTACACACCCCTTCAATTTGCACAAATAGAACAGAGGCAACAAA
ATGGATGACGTCGAGGCAGTGGGCCATCGCATCCACGATGCAGCCAAGAA
AGGATCGATTGAGAAGGTGGCGAAGCTTCTAAAACAGTATCCCCAGTTGG
TGAATGACAAGGTAGGTGGGTGGTAGGGGACAGGAAGGAGGAGACTAGGA
GCGAGGGAACGAGAAAGGAGAGAGTGGAGGATTCCATGATTCACGTTTTG
CTGGCTTCTCCATTAGCTGTGACCCTTCTGTCACTCGTTGTGCTAATTTG
GAAATCCATACTCAATCACACGCACACACACACTAACACGCACATATGTA
CCTGTCACCTCCCTCCCTTTCTCCTCCTTCCCTTTCTTTCTTCCCTGCCT
AGGGGGAAGACGGGTGGACGCCGCTATTCCGTGCCTGCTACAATAACCGC
CTTGATCTGGTAAAATTTCTGGCAGAGCACGGGGCCAACTTAGGGCGGGA
TGCCGATGATTTCCAGAACACGGCCCTGCACGCATGTTGCATCAATGGGC
ATAGGGAAGTGGCAGAGTATTTGCTGACAAAAGGGGTGAATGTGAACTGC
CACGATAACGTGGGGGGATGGACCCCTGTGTACGCTGCTTCATTTTTTGG
GTGGCCGGATCTTGTGAGGTTTTTATTGAAAAATGGGGCGGATCCGACGA
TCGTCTGTAAGGAGGGGAAGGCTCCGCTGGACGTGGTGTGCGAGGCAGGG
TACCGTGGCGAACATCGCTTGGTGATCGAGGCACTGCTGCAGGACAGGCC
GGAACCAACTGTGTTGCCTCCGCGAAGCGTGAGGGTGCCGGTTGGGGTGG
AAGAAGGGGAAGTAGGGGGAAATGCAGGGGGGGAAGGGGCGAAGGGAGGG
GGGAGGCATCACCAGCATACTTACGCGAATACGCTGGAGGCACACGCGAG
GGGGCATAGGGCGATAAACAGTTGTTTGCCCGCTGGTTCTCCTCTTGTGC
TCTCTCCTGGTGGTGGGGGCATGGGCGGAGGAAGGGGCGGAGGGGTTGGT
GGAGGAGGAGTGGGAGGAGCGGCGGGGGGGGTTGCGGGGCCTCCCCCGTA
CACGGAAGATAGGGTGGGGAACCGAATTTATTTTCCTTGGGAGATGACAA
GCGGCGACTACGTTTTAAGGGCCTTGGGACTAACGAGGGAGATTTTGATG
CAGCTTTTTCGACAGGCGGTGGAAGAAGGGACGTTATCGGACCTGCCTGT
GGTGGGGCCTTGTGGGAGCAAGAGTGCGTTTAGGACTTACTTGGACGCCT
TTGATTTGCTGGTGATGGCGATAGAGCGTGAGAAAGAGTTGGAGAATTAT
TTGGAGGCGAAGAGGAAGAAGGAGATGGTGGAGAGGAAGGAGGGGGGAAA
GGAGCCAGGGGAGGAGGGGAAGGCTCCGGATGTGAGGTGTCGTGGCGTGG
GGGCGGATGTGGATGGAGGTAAATCGTTACAGCAATTGAAGGAGCGGTTA
GAAGGCTTGGGACAAACGTTGGCTTTGCAGAGTTCCCCTACTCACCATTC
CAGCCGGGAAGAAGTTAGTTTGCTTTTGGGGAGTCTGCGTGAGTTCGCTG
CTCAGGTCCATCTACCGGAGATGGCAGAGGATGTCCATTCGTTGCTGGAG
CAGTATTACACGCATTCGGAAAGTAAGAGCTTGCGGCTGCGATTGTTGAG
GGTGAGTCAGATTCGAGGGACGTTGGAAGGGCATGAGCGGGTCTCAGCGG
GGGTGCCTTGTCTTGCATTGAGCGATGGGCGTGGAGGAGGAGGAGCTGGA
GGAGAAGGGGAGAGTGGAAATGAGGTGGGAGGACAGGCGAGGAATGGTAG
TGGTGATAACGATCGCAGTAGTGGAAGTGGGGGGGCAGGGAGTTCCTCGG
TGCTGGGCGCAAGGGTGAGCAGCGGATTCAGCCCCGTGGGGGGGGGGGAG
GGCAAGGAGGGGCGGGTGAAGGGGAGTTTACGAGGGCGGAGGAAAAGGAA
CGGAGCAAGAAGGAGTTTTTGGAGCGATACAAGTTTCTGAAGGAGCACAC
GGAGGATTTGGTGCTGAATGATGATGTATGAGATGCAGTTGAGAGAAGAC
GTGAGAGAGGAGAAAATCTGTGGGTGTGGTAAAGTTTGGAAGACGGGCCA
TGGAAGAGGAACGAGGAAAAATAGGTAAAGGAGCAAGGAATAGCGACGAA
AAAGAATGATTCATTACAATTTCACAAAAATGTAACCATCAAATCAGAAA
GAAGAAACAATCACCCATAAACTTGCTGATGCGCAGTGTTCCTTTCTGTC
TCCGACTTTTGATTTTTTTAGGGCATCAAAAGCCACACCAGCTTGTGTAC
AAATGGTATCGTAATGGGAGCCGGTGGACGATGGCTTTTGAGTGACAAGC
GTAAACTGCTCAGCCATCGTCCGGATTTCTTGCCTGATTTTTATGCAGCC
TCTCCTTCTCTACCCCTCCCTCCCTCCTCTCCATCCCTCCC back to topCoding sequence (CDS) from alignment at chr17:232804..235644- >NO17G00660.1 ID=NO17G00660.1|Name=NO17G00660.1|organism=Nannochloropsis oceanica|type=CDS|length=1749bp|location=Sequence derived from alignment at chr17:232804..235644- (Nannochloropsis oceanica)
ATGGATGACGTCGAGGCAGTGGGCCATCGCATCCACGATGCAGCCAAGAA
AGGATCGATTGAGAAGGTGGCGAAGCTTCTAAAACAGTATCCCCAGTTGG
TGAATGACAAGGGGGAAGACGGGTGGACGCCGCTATTCCGTGCCTGCTAC
AATAACCGCCTTGATCTGGTAAAATTTCTGGCAGAGCACGGGGCCAACTT
AGGGCGGGATGCCGATGATTTCCAGAACACGGCCCTGCACGCATGTTGCA
TCAATGGGCATAGGGAAGTGGCAGAGTATTTGCTGACAAAAGGGGTGAAT
GTGAACTGCCACGATAACGTGGGGGGATGGACCCCTGTGTACGCTGCTTC
ATTTTTTGGGTGGCCGGATCTTGTGAGGTTTTTATTGAAAAATGGGGCGG
ATCCGACGATCGTCTGTAAGGAGGGGAAGGCTCCGCTGGACGTGGTGTGC
GAGGCAGGGTACCGTGGCGAACATCGCTTGGTGATCGAGGCACTGCTGCA
GGACAGGCCGGAACCAACTGTGTTGCCTCCGCGAAGCGTGAGGGTGCCGG
TTGGGGTGGAAGAAGGGGAAGTAGGGGGAAATGCAGGGGGGGAAGGGGCG
AAGGGAGGGGGGAGGCATCACCAGCATACTTACGCGAATACGCTGGAGGC
ACACGCGAGGGGGCATAGGGCGATAAACAGTTGTTTGCCCGCTGGTTCTC
CTCTTGTGCTCTCTCCTGGTGGTGGGGGCATGGGCGGAGGAAGGGGCGGA
GGGGTTGGTGGAGGAGGAGTGGGAGGAGCGGCGGGGGGGGTTGCGGGGCC
TCCCCCGTACACGGAAGATAGGGTGGGGAACCGAATTTATTTTCCTTGGG
AGATGACAAGCGGCGACTACGTTTTAAGGGCCTTGGGACTAACGAGGGAG
ATTTTGATGCAGCTTTTTCGACAGGCGGTGGAAGAAGGGACGTTATCGGA
CCTGCCTGTGGTGGGGCCTTGTGGGAGCAAGAGTGCGTTTAGGACTTACT
TGGACGCCTTTGATTTGCTGGTGATGGCGATAGAGCGTGAGAAAGAGTTG
GAGAATTATTTGGAGGCGAAGAGGAAGAAGGAGATGGTGGAGAGGAAGGA
GGGGGGAAAGGAGCCAGGGGAGGAGGGGAAGGCTCCGGATGTGAGGTGTC
GTGGCGTGGGGGCGGATGTGGATGGAGGTAAATCGTTACAGCAATTGAAG
GAGCGGTTAGAAGGCTTGGGACAAACGTTGGCTTTGCAGAGTTCCCCTAC
TCACCATTCCAGCCGGGAAGAAGTTAGTTTGCTTTTGGGGAGTCTGCGTG
AGTTCGCTGCTCAGGTCCATCTACCGGAGATGGCAGAGGATGTCCATTCG
TTGCTGGAGCAGTATTACACGCATTCGGAAAGTAAGAGCTTGCGGCTGCG
ATTGTTGAGGGTGAGTCAGATTCGAGGGACGTTGGAAGGGCATGAGCGGG
TCTCAGCGGGGGTGCCTTGTCTTGCATTGAGCGATGGGCGTGGAGGAGGA
GGAGCTGGAGGAGAAGGGGAGAGTGGAAATGAGGTGGGAGGACAGGCGAG
GAATGGTAGTGGTGATAACGATCGCAGTAGTGGAAGTGGGGGGGCAGGGA
GTTCCTCGGTGCTGGGCGCAAGGGTGAGCAGCGGATTCAGCCCCGTGGGG
GGGGGGGAGGGCAAGGAGGGGCGGGTGAAGGGGAGTTTACGAGGGCGGAG
GAAAAGGAACGGAGCAAGAAGGAGTTTTTGGAGCGATACAAGTTTCTGA back to top
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