NO17G00490, NO17G00490 (gene) Nannochloropsis oceanica

Overview
NameNO17G00490
Unique NameNO17G00490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length471
Alignment locationchr17:178847..179317 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:178847..179317 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO17G00490 vs. NCBI_GenBank
Match: EWM21172.1 (hypothetical protein Naga_100111g9 [Nannochloropsis gaditana])

HSP 1 Score: 198.0 bits (502), Expect = 2.200e-47
Identity = 90/141 (63.83%), Postives = 112/141 (79.43%), Query Frame = 0
Query:   16 NASPTDFLMLSAVMQVLLTILLGWLMLIPHQAWGHDLAFATRLRSRHVAMAHVDWVMLALVQFAAAYAMSLKSPSQAFIVSRCLVFNGWIAPTVYLAKAWGINGFRLDGKRGMDTLIGLAGLMGIVTFTYGWAMIVGAWWL 157
            +A PT+FL+ S V+Q+L T +LGW ML+PHQAWG   + ATRLRSR VAMAHVDW+MLALVQFAAAY ++LK+   A +V+RCL F GW+ P+VY+A+AWGINGFRLDGKR  DT++G  G  GI+ FTYGWA IV  WW+
Sbjct:   35 SAGPTEFLVRSGVLQILFTTILGWAMLLPHQAWGPSSSLATRLRSRDVAMAHVDWIMLALVQFAAAYILTLKAVPSAHVVARCLAFYGWVGPSVYMARAWGINGFRLDGKRMWDTVMGTLGFTGILAFTYGWAQIVRVWWM 175          
BLAST of NO17G00490 vs. NCBI_GenBank
Match: WP_050432998.1 (hypothetical protein [Chondromyces crocatus] >AKT41185.1 uncharacterized protein CMC5_053460 [Chondromyces crocatus])

HSP 1 Score: 89.0 bits (219), Expect = 1.500e-14
Identity = 54/140 (38.57%), Postives = 79/140 (56.43%), Query Frame = 0
Query:   17 ASPTDFLMLSAVMQVLLTILLGWLMLIPHQAWGHDLAFATRLRSRHVAMAHVDWVMLALVQFAAAYAMSLKSPSQAFIVSRCLVFNGWIAPTVYLAKAWGINGFRLDGKRGMDTLIGLAGLMGIVTFTYGWAMIVGAWWL 157
            + P   L  +  +QVL++ LLG  MLIP Q WG  L  A R+  + +  AH+DW+MLA +Q+ AA+AM+  S +++  V+  LVF GW  PT YL +  GIN F L G+        +AGL  +      WA++  +W L
Sbjct:    7 SDPVRLLAANGALQVLVSSLLGVYMLIPMQPWGKRL--APRVNMKSLLAAHLDWLMLAFMQWGAAFAMNTWSSTRSLAVALLLVFGGWTNPTPYLLRGAGINAFVLAGRPAQIVAASVAGLSSL-AIIIAWAIL--SWGL 141          
BLAST of NO17G00490 vs. NCBI_GenBank
Match: OGA81084.1 (hypothetical protein A2711_08105 [Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_63_240])

HSP 1 Score: 79.7 bits (195), Expect = 8.800e-12
Identity = 46/136 (33.82%), Postives = 71/136 (52.21%), Query Frame = 0
Query:   16 NASPTDFLMLSAVMQVLLTILLGWLMLIPHQAWGHDLAFATRLRSRHVAMAHVDWVMLALVQFAAAYAMSLKSPSQAFIVSRCLVFNGWIAPTVYLAKAWGINGFRLDGKRGMDTLIGLAGLMGIVTFTYGWAMIV 152
            N  P   L  +A +QVL++ LLG  MLIP Q WG  L  A R+  + +   H+DW MLA +Q+ AA+ M     ++  +++  L+F GW     YL + +G+N F + G        G+AGL  ++     W  I+
Sbjct:    2 NFDPVFALSCNAALQVLVSSLLGTFMLIPLQPWGKKL--AARVNMKSLLATHMDWYMLAFMQWGAAFMMDRWDAARDPVLALLLMFGGWTNALPYLLRGFGVNAFVMGGNTLQRVSAGIAGL-SVLAILVAWTAII 134          
BLAST of NO17G00490 vs. NCBI_GenBank
Match: APR77485.1 (Hypothetical protein A7982_02832 [Minicystis rosea])

HSP 1 Score: 79.7 bits (195), Expect = 8.800e-12
Identity = 49/129 (37.98%), Postives = 67/129 (51.94%), Query Frame = 0
Query:   23 LMLSAVMQVLLTILLGWLMLIPHQAWGHDLAFATRLRSRHVAMAHVDWVMLALVQFAAAYAMSLKSPSQAFIVSRCLVFNGWIAPTVYLAKAWGINGFRLDGKRGMDTLIGLAGLMGIVTFTYGWAMIV 152
            L+ +AV QVL + L GW ML+P Q WG    +   L  +    AH+DW+ML L Q   AYA  L  P    +V+  LVF GW+ P  YL +A G + F L G         LAG   +   T G+++I+
Sbjct:    5 LVTNAVAQVLFSCLFGWAMLVPMQPWGQ--RWRNILPVKAALAAHLDWIMLGLAQGLVAYASGLVEPRHPTLVTALLVFGGWVNPVPYLLRAKGTDAFVLAGGLRQRAAALLAGTSSL-ALTIGFSLIL 130          
BLAST of NO17G00490 vs. NCBI_GenBank
Match: PHR78006.1 (hypothetical protein COA60_03575 [Robiginitomaculum sp.])

HSP 1 Score: 66.6 bits (161), Expect = 7.700e-8
Identity = 40/132 (30.30%), Postives = 67/132 (50.76%), Query Frame = 0
Query:   23 LMLSAVMQVLLTILLGWLMLIPHQAWGHDLAFATRLRSRHVAMAHVDWVMLALVQFAAAYAMSLKSPSQAFIVSRCLVFNGWIAPTVYLAKAWGINGFRLDGKRGMDTLIGLAGLMGIVTFTYGWAMIVGAW 155
            L+ S    +L + LLG LML+P QA  H+      +  +H+  AH+DW++L L+Q  A   + + +   + +V   ++F GWI P  Y+ KA+G+N F+  G         L GL  +        ++ GA+
Sbjct:   10 LLFSGGAAILFSSLLGVLMLMPLQA--HEPKKKAGVNFKHIGAAHLDWIILGLMQGLAGALIWVFALDVSLMVLGLMIFGGWINPLAYVFKAFGVNAFQFSGGAVQQFAAALGGLSSLAIIVAWTLILFGAY 139          
The following BLAST results are available for this feature:
BLAST of NO17G00490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM21172.12.200e-4763.83hypothetical protein Naga_100111g9 [Nannochloropsi... [more]
WP_050432998.11.500e-1438.57hypothetical protein [Chondromyces crocatus] >AKT4... [more]
OGA81084.18.800e-1233.82hypothetical protein A2711_08105 [Burkholderiales ... [more]
APR77485.18.800e-1237.98Hypothetical protein A7982_02832 [Minicystis rosea... [more]
PHR78006.17.700e-830.30hypothetical protein COA60_03575 [Robiginitomaculu... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004766NSK004766Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00490.1NO17G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673042gene_7836Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100111g9gene9250Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00490.1NO17G00490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00490 ID=NO17G00490|Name=NO17G00490|organism=Nannochloropsis oceanica|type=gene|length=471bp
ATGTGGATCATCTTCACATTGTCCTCGTCCTTGAGTAAATTCTGGAACGC
CAGCCCGACGGACTTCCTCATGCTTTCAGCTGTCATGCAAGTCCTTCTTA
CGATCCTCCTAGGGTGGCTCATGCTCATCCCGCACCAAGCTTGGGGCCAT
GACTTGGCGTTTGCGACGCGCCTGCGTTCCCGTCACGTGGCCATGGCGCA
TGTGGACTGGGTTATGCTGGCACTGGTTCAATTCGCGGCAGCGTATGCCA
TGAGTCTCAAGTCTCCTTCTCAGGCCTTCATAGTTTCTAGATGCTTGGTA
TTTAATGGATGGATCGCCCCGACTGTATATTTGGCCAAGGCGTGGGGTAT
AAATGGCTTCCGGTTGGATGGCAAGCGCGGCATGGACACGCTCATTGGTT
TGGCAGGGTTGATGGGCATTGTCACCTTCACCTACGGCTGGGCTATGATT
GTGGGGGCGTGGTGGCTCTAA
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protein sequence of NO17G00490.1

>NO17G00490.1-protein ID=NO17G00490.1-protein|Name=NO17G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MWIIFTLSSSLSKFWNASPTDFLMLSAVMQVLLTILLGWLMLIPHQAWGH
DLAFATRLRSRHVAMAHVDWVMLALVQFAAAYAMSLKSPSQAFIVSRCLV
FNGWIAPTVYLAKAWGINGFRLDGKRGMDTLIGLAGLMGIVTFTYGWAMI
VGAWWL*
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Synonyms
Publications