NO17G00490.1, NO17G00490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00490.1
Unique NameNO17G00490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length471
Alignment locationchr17:178847..179317 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:178847..179317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G00490.1 vs.
Match: EWM21172.1 (hypothetical protein Naga_100111g9 [Nannochloropsis gaditana])

HSP 1 Score: 198.0 bits (502), Expect = 2.200e-47
Identity = 90/141 (63.83%), Postives = 112/141 (79.43%), Query Frame = 0 
Query:   16 NASPTDFLMLSAVMQVLLTILLGWLMLIPHQAWGHDLAFATRLRSRHVAMAHVDWVMLALVQFAAAYAMSLKSPSQAFIVSRCLVFNGWIAPTVYLAKAWGINGFRLDGKRGMDTLIGLAGLMGIVTFTYGWAMIVGAWWL 157
            +A PT+FL+ S V+Q+L T +LGW ML+PHQAWG   + ATRLRSR VAMAHVDW+MLALVQFAAAY ++LK+   A +V+RCL F GW+ P+VY+A+AWGINGFRLDGKR  DT++G  G  GI+ FTYGWA IV  WW+
Sbjct:   35 SAGPTEFLVRSGVLQILFTTILGWAMLLPHQAWGPSSSLATRLRSRDVAMAHVDWIMLALVQFAAAYILTLKAVPSAHVVARCLAFYGWVGPSVYMARAWGINGFRLDGKRMWDTVMGTLGFTGILAFTYGWAQIVRVWWM 175
The following BLAST results are available for this feature:
BLAST of NO17G00490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21172.12.200e-4763.83hypothetical protein Naga_100111g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00490NO17G00490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00490.1NO17G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00490.1.cds1NO17G00490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00490.1 ID=NO17G00490.1|Name=NO17G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=471bp
ATGTGGATCATCTTCACATTGTCCTCGTCCTTGAGTAAATTCTGGAACGC
CAGCCCGACGGACTTCCTCATGCTTTCAGCTGTCATGCAAGTCCTTCTTA
CGATCCTCCTAGGGTGGCTCATGCTCATCCCGCACCAAGCTTGGGGCCAT
GACTTGGCGTTTGCGACGCGCCTGCGTTCCCGTCACGTGGCCATGGCGCA
TGTGGACTGGGTTATGCTGGCACTGGTTCAATTCGCGGCAGCGTATGCCA
TGAGTCTCAAGTCTCCTTCTCAGGCCTTCATAGTTTCTAGATGCTTGGTA
TTTAATGGATGGATCGCCCCGACTGTATATTTGGCCAAGGCGTGGGGTAT
AAATGGCTTCCGGTTGGATGGCAAGCGCGGCATGGACACGCTCATTGGTT
TGGCAGGGTTGATGGGCATTGTCACCTTCACCTACGGCTGGGCTATGATT
GTGGGGGCGTGGTGGCTCTAA
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protein sequence of NO17G00490.1

>NO17G00490.1-protein ID=NO17G00490.1-protein|Name=NO17G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MWIIFTLSSSLSKFWNASPTDFLMLSAVMQVLLTILLGWLMLIPHQAWGH
DLAFATRLRSRHVAMAHVDWVMLALVQFAAAYAMSLKSPSQAFIVSRCLV
FNGWIAPTVYLAKAWGINGFRLDGKRGMDTLIGLAGLMGIVTFTYGWAMI
VGAWWL*
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mRNA from alignment at chr17:178847..179317+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00490.1 ID=NO17G00490.1|Name=NO17G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=471bp|location=Sequence derived from alignment at chr17:178847..179317+ (Nannochloropsis oceanica)
ATGTGGATCATCTTCACATTGTCCTCGTCCTTGAGTAAATTCTGGAACGC
CAGCCCGACGGACTTCCTCATGCTTTCAGCTGTCATGCAAGTCCTTCTTA
CGATCCTCCTAGGGTGGCTCATGCTCATCCCGCACCAAGCTTGGGGCCAT
GACTTGGCGTTTGCGACGCGCCTGCGTTCCCGTCACGTGGCCATGGCGCA
TGTGGACTGGGTTATGCTGGCACTGGTTCAATTCGCGGCAGCGTATGCCA
TGAGTCTCAAGTCTCCTTCTCAGGCCTTCATAGTTTCTAGATGCTTGGTA
TTTAATGGATGGATCGCCCCGACTGTATATTTGGCCAAGGCGTGGGGTAT
AAATGGCTTCCGGTTGGATGGCAAGCGCGGCATGGACACGCTCATTGGTT
TGGCAGGGTTGATGGGCATTGTCACCTTCACCTACGGCTGGGCTATGATT
GTGGGGGCGTGGTGGCTCTAA
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Coding sequence (CDS) from alignment at chr17:178847..179317+

>NO17G00490.1 ID=NO17G00490.1|Name=NO17G00490.1|organism=Nannochloropsis oceanica|type=CDS|length=471bp|location=Sequence derived from alignment at chr17:178847..179317+ (Nannochloropsis oceanica)
ATGTGGATCATCTTCACATTGTCCTCGTCCTTGAGTAAATTCTGGAACGC
CAGCCCGACGGACTTCCTCATGCTTTCAGCTGTCATGCAAGTCCTTCTTA
CGATCCTCCTAGGGTGGCTCATGCTCATCCCGCACCAAGCTTGGGGCCAT
GACTTGGCGTTTGCGACGCGCCTGCGTTCCCGTCACGTGGCCATGGCGCA
TGTGGACTGGGTTATGCTGGCACTGGTTCAATTCGCGGCAGCGTATGCCA
TGAGTCTCAAGTCTCCTTCTCAGGCCTTCATAGTTTCTAGATGCTTGGTA
TTTAATGGATGGATCGCCCCGACTGTATATTTGGCCAAGGCGTGGGGTAT
AAATGGCTTCCGGTTGGATGGCAAGCGCGGCATGGACACGCTCATTGGTT
TGGCAGGGTTGATGGGCATTGTCACCTTCACCTACGGCTGGGCTATGATT
GTGGGGGCGTGGTGGCTCTAA
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Synonyms
Publications