NO17G00350, NO17G00350 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO17G00350
Unique Name	NO17G00350
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2549
Alignment location	chr17:128805..131353 -

Link to JBrowse

Properties


Property Name	Value
Description	Chaperone protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr17	genome	chr17:128805..131353 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR036869	J_dom_sf
IPR001623	DnaJ_domain

Homology

[Close]

BLAST of NO17G00350 vs. NCBI_GenBank
Match: EWM21194.1 (chaperone protein [Nannochloropsis gaditana])

HSP 1 Score: 292.7 bits (748), Expect = 2.000e-75
Identity = 212/321 (66.04%), Postives = 234/321 (72.90%), Query Frame = 0

Query:    1 MAGAKMDDDEKREDWFEVMGLSWDATADDVKDAYRKLALKYHPDKNQGDPKAADRFMLVNKAKIYLADDDKRSKLSMKKKREAAREKRHTQRFAEMDAQRKRFKSDLEAREA-GEREKXXXXXXXXXXXXXXXXXXXXXXXXXAHVLDELRKVGLAQREAEARRIEELMHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEMHDGPEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWKRSTLAESHSDESLYQLLVRFGPIKRVEMTGIKGNTATIIFDERSAAERAVAAYEFDANMRLSIPADRKYK 321
            MAGAK +DDEKREDWFEVMGLSWDATA++VKDAY+KLALKYHPDKN+GDPKAADRFMLV KAK +L+D+ KR +LS KK REAARE+RHTQRF EMDAQRKRFK DLEAREA      XXXXXXXXXXXXXXXXXXXXXXX  AHVLDELR++G AQREAEARR+EEL+H                           XXXXX         XXXXXXXXXXXX                          WKRS L ES SDESLYQLLVR+GPIK VEMTG+KGNTA ++F+ERS AERAVAAYEFDA MRL+IPAD+KY+
Sbjct:    1 MAGAKDEDDEKREDWFEVMGLSWDATAEEVKDAYKKLALKYHPDKNRGDPKAADRFMLVTKAKSFLSDEGKRRRLSEKKHREAAREQRHTQRFKEMDAQRKRFKGDLEAREAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXINAHVLDELRRMGQAQREAEARRMEELLH-----------KSNAAAEAAMARRAAEXXXXXXXXXXXXXXXXXXXXXXXXXXVGEGLKGAPSGVSTRTMGASTEVRVKWKRSQLEESFSDESLYQLLVRYGPIKAVEMTGVKGNTAKVVFEERSGAERAVAAYEFDAGMRLTIPADKKYR 310

[Close]

BLAST of NO17G00350 vs. NCBI_GenBank
Match: XP_005854814.1 (block of proliferation 1 [Nannochloropsis gaditana CCMP526] >EKU21550.1 block of proliferation 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 183.7 bits (465), Expect = 1.300e-42
Identity = 93/112 (83.04%), Postives = 103/112 (91.96%), Query Frame = 0

Query:    1 MAGAKMDDDEKREDWFEVMGLSWDATADDVKDAYRKLALKYHPDKNQGDPKAADRFMLVNKAKIYLADDDKRSKLSMKKKREAAREKRHTQRFAEMDAQRKRFKSDLEAREA 113
            MAGAK +DDEKREDWFEVMGLSWDATA++VKDAY+KLALKYHPDKN+GDPKAADRFMLV KAK +L+D+ KR +LS KK REAARE+RHTQRF EMDAQRKRFK DLEAREA
Sbjct:  438 MAGAKDEDDEKREDWFEVMGLSWDATAEEVKDAYKKLALKYHPDKNRGDPKAADRFMLVTKAKSFLSDEGKRRRLSEKKHREAAREQRHTQRFKEMDAQRKRFKGDLEAREA 549

[Close]

BLAST of NO17G00350 vs. NCBI_GenBank
Match: WP_012468603.1 (integrase [Geobacter lovleyi] >ACD94247.1 chaperone DnaJ domain protein [Geobacter lovleyi SZ])

HSP 1 Score: 76.3 bits (186), Expect = 3.000e-10
Identity = 33/63 (52.38%), Postives = 50/63 (79.37%), Query Frame = 0

Query:   12 REDWFEVMGLSWDATADDVKDAYRKLALKYHPDKNQGDPKAADRFMLVNKAKIYLADDDKRSK 75
            ++D++E +G++ DA+ADD+K A+RKLA+KYHPD+NQGD  A ++F  +N+A   L+D DKR K
Sbjct:    3 QKDYYEALGVAKDASADDIKKAFRKLAVKYHPDRNQGDTAAEEKFKEINEAYAVLSDPDKRKK 65

[Close]

BLAST of NO17G00350 vs. NCBI_GenBank
Match: WP_013553430.1 (molecular chaperone DnaJ [Nitratifractor salsuginis] >ADV45734.1 chaperone protein DnaJ [Nitratifractor salsuginis DSM 16511])

HSP 1 Score: 76.3 bits (186), Expect = 3.000e-10
Identity = 33/60 (55.00%), Postives = 50/60 (83.33%), Query Frame = 0

Query:   14 DWFEVMGLSWDATADDVKDAYRKLALKYHPDKNQGDPKAADRFMLVNKAKIYLADDDKRS 74
            D++E++ +S DATA ++K AYRKLAL+YHPDKN GDP+A ++F L+N+A   L+D++KR+
Sbjct:    5 DYYEILEVSRDATAAEIKKAYRKLALRYHPDKNPGDPEAEEKFKLINEAYGVLSDEEKRA 64

[Close]

BLAST of NO17G00350 vs. NCBI_GenBank
Match: WP_006599760.1 (molecular chaperone DnaJ [Pseudoramibacter alactolyticus] >EFV00522.1 chaperone protein DnaJ [Pseudoramibacter alactolyticus ATCC 23263])

HSP 1 Score: 75.9 bits (185), Expect = 3.900e-10
Identity = 33/63 (52.38%), Postives = 51/63 (80.95%), Query Frame = 0

Query:   10 EKREDWFEVMGLSWDATADDVKDAYRKLALKYHPDKNQGDPKAADRFMLVNKAKIYLADDDKR 73
            +++ D++EV+G+  +A+ADD+K AYRKLALKYHPD+N+GD +A ++F   N+A   L+DD+KR
Sbjct:    3 KEKRDYYEVLGVDKNASADDIKKAYRKLALKYHPDRNKGDKEAEEKFKEANEAYEVLSDDEKR 65

[Close]

BLAST of NO17G00350 vs. NCBI_GenBank
Match: WP_089182232.1 (molecular chaperone DnaJ [Campylobacter sputorum] >ASM34828.1 DnaK system heat shock co-chaperone [Campylobacter sputorum bv. sputorum RM3237])

HSP 1 Score: 75.9 bits (185), Expect = 3.900e-10
Identity = 32/61 (52.46%), Postives = 50/61 (81.97%), Query Frame = 0

Query:   13 EDWFEVMGLSWDATADDVKDAYRKLALKYHPDKNQGDPKAADRFMLVNKAKIYLADDDKRS 74
            ED++E++G+S  A+ D++K A+RKLALKYHPD+NQGD +A ++F  +N+A   L+D++KRS
Sbjct:    3 EDYYEILGISKSASGDEIKSAFRKLALKYHPDRNQGDKEAEEKFKKINEAYQVLSDNEKRS 63

[Close]

BLAST of NO17G00350 vs. NCBI_GenBank
Match: WP_089187974.1 (molecular chaperone DnaJ [Campylobacter sputorum] >ASM36492.1 DnaK system heat shock co-chaperone [Campylobacter sputorum bv. faecalis CCUG 20703])

HSP 1 Score: 75.9 bits (185), Expect = 3.900e-10
Identity = 32/61 (52.46%), Postives = 50/61 (81.97%), Query Frame = 0

Query:   13 EDWFEVMGLSWDATADDVKDAYRKLALKYHPDKNQGDPKAADRFMLVNKAKIYLADDDKRS 74
            ED++E++G+S  A+ D++K A+RKLALKYHPD+NQGD +A ++F  +N+A   L+D++KRS
Sbjct:    3 EDYYEILGISKSASGDEIKSAFRKLALKYHPDRNQGDKEAEEKFKKINEAYQVLSDNEKRS 63

[Close]

BLAST of NO17G00350 vs. NCBI_GenBank
Match: WP_089189188.1 (molecular chaperone DnaJ [Campylobacter sputorum] >ASM38187.1 DnaK system heat shock co-chaperone [Campylobacter sputorum bv. paraureolyticus LMG 11764])

HSP 1 Score: 75.9 bits (185), Expect = 3.900e-10
Identity = 32/61 (52.46%), Postives = 50/61 (81.97%), Query Frame = 0

Query:   13 EDWFEVMGLSWDATADDVKDAYRKLALKYHPDKNQGDPKAADRFMLVNKAKIYLADDDKRS 74
            ED++E++G+S  A+ D++K A+RKLALKYHPD+NQGD +A ++F  +N+A   L+D++KRS
Sbjct:    3 EDYYEILGISKSASGDEIKSAFRKLALKYHPDRNQGDKEAEEKFKKINEAYQVLSDNEKRS 63

[Close]

BLAST of NO17G00350 vs. NCBI_GenBank
Match: WP_033916384.1 (molecular chaperone DnaJ [Campylobacter sputorum])

HSP 1 Score: 75.5 bits (184), Expect = 5.100e-10
Identity = 32/61 (52.46%), Postives = 49/61 (80.33%), Query Frame = 0

Query:   13 EDWFEVMGLSWDATADDVKDAYRKLALKYHPDKNQGDPKAADRFMLVNKAKIYLADDDKRS 74
            ED++E++G+S  A+ D++K A+RKLALKYHPD+NQGD +A ++F  +N+A   L+D +KRS
Sbjct:    3 EDYYEILGISKSASGDEIKSAFRKLALKYHPDRNQGDKEAEEKFKKINEAYQVLSDSEKRS 63

[Close]

BLAST of NO17G00350 vs. NCBI_GenBank
Match: WP_089193074.1 (molecular chaperone DnaJ [Campylobacter sputorum] >ASM39813.1 DnaK system heat shock co-chaperone [Campylobacter sputorum])

HSP 1 Score: 75.5 bits (184), Expect = 5.100e-10
Identity = 32/61 (52.46%), Postives = 49/61 (80.33%), Query Frame = 0

Query:   13 EDWFEVMGLSWDATADDVKDAYRKLALKYHPDKNQGDPKAADRFMLVNKAKIYLADDDKRS 74
            ED++E++G+S  A+ D++K A+RKLALKYHPD+NQGD +A ++F  +N+A   L+D +KRS
Sbjct:    3 EDYYEILGISKSASGDEIKSAFRKLALKYHPDRNQGDKEAEEKFKKINEAYQVLSDSEKRS 63

The following BLAST results are available for this feature:

BLAST of NO17G00350 vs. NCBI_GenBank

BLAST of NO17G00350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM21194.1	2.000e-75	66.04	chaperone protein [Nannochloropsis gaditana]	[more]
XP_005854814.1	1.300e-42	83.04	block of proliferation 1 [Nannochloropsis gaditana...	[more]
WP_012468603.1	3.000e-10	52.38	integrase [Geobacter lovleyi] >ACD94247.1 chaperon...	[more]
WP_013553430.1	3.000e-10	55.00	molecular chaperone DnaJ [Nitratifractor salsugini...	[more]
WP_006599760.1	3.900e-10	52.38	molecular chaperone DnaJ [Pseudoramibacter alactol...	[more]
WP_089182232.1	3.900e-10	52.46	molecular chaperone DnaJ [Campylobacter sputorum] ...	[more]
WP_089187974.1	3.900e-10	52.46	molecular chaperone DnaJ [Campylobacter sputorum] ...	[more]
WP_089189188.1	3.900e-10	52.46	molecular chaperone DnaJ [Campylobacter sputorum] ...	[more]
WP_033916384.1	5.100e-10	52.46	molecular chaperone DnaJ [Campylobacter sputorum]	[more]
WP_089193074.1	5.100e-10	52.46	molecular chaperone DnaJ [Campylobacter sputorum] ...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniR035	ncniR035	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR084	ngnoR084	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO17G00350.1	NO17G00350.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|170691	gene_7855	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100474g3	gene9232	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO17G00350.1	NO17G00350.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO17G00350 ID=NO17G00350|Name=NO17G00350|organism=Nannochloropsis oceanica|type=gene|length=2549bp
TGTCTTGTTTTGCTTCTTGTTTTGCTCGCCGTTGCGATACCTGTTACCGT
CAACATGGACGTCGAATTGGCTTTCTCCTTGTTTCTGCCGCCTTCGTGCC
TTGGCCGTCACAGCACTTTCTTTCACAAAATAATATGTCATAGCCTCCAA
GTGCTGCTTTTGCGCCTGGGAAACAGACATCCAGTGCCCTCCCTTGTCAT
ATATTTTCGGGGAACGGTAGAGGGAGAGGGAAAGGCGAATGGATAAGAAG
GAATGTGGCGCAAATTGCGTCTTTTTACCAGTCTCACAATGGCAATGAGT
TGGCTGCCTATGTTATAGCCTGATCATCCTGGGCCGCATAAATGTACGAA
AGAACGCATGGTCAAGAAGACAAGTGATTAACGGAGAACAAAAAAGGCGA
CGAAGCTCCGGCGGCCGTTGGCTCCAGCAAGAGGACGTTTCGATCGCATT
TCCACACACATCATCCGCTAACTCACTCACACACTGTCTTCCATTACCTG
TCCAGACAGGAAGCTTAGGGAGTGCCAAACAAGTCAACTGAGCTAATTGC
CGTTGGAACCAGTCTGTACCCTTACCTCCTCCCCTACTGGAGCCCCCATC
CCATAGGGCAAATCATAACACACCACACGGGCTACTTAGAACAATGGCAG
GCGCCAAGATGGATGACGACGAGAAACGGGAGGATTGGTTCGAAGTCATG
GGGCTTTCGTGGGATGCGACGGCGGACGACGTAAAGGATGgtacgtgtgt
atatgtggtgcttcgggtgaatggggatgatcatcatctttctctaccac
ttcattacctattagctcgcccttgcttatctatatgtgtatcatacaac
acgtgtatttctaggcttctctcaggacgcctctttttaccaacttccaa
caccttacctactgccgaccacctcatatccccctttctttcctctcttc
atccctccttcccctccactgtacagCCTATAGGAAACTAGCTCTCAAAT
ATCACCCGGATAAGAACCAAGGCGATCCTAAGGCCGCCGATCGCTTTATG
CTTGTAAATAAGGCCAAGATTTATTTAGCGGACGATGATAAACGCTCCAA
GCTTTCCATGAAAAAGAAAAGGGAAGCGGCAAGGGAGAAGAGGCACACGC
AACGATTCGCGGAGATGGATGCGCAACGCAAAAGATTCAAGAGTGATTTG
GAGGCCAGAGAAGCAGGGGAGAGGGAGAAAGCTCGAATGCAAAGAACATC
AGGAGGAGGAGCAGGAGGAGGGGGGGGGGGAGGAGGGAAGGGGGTAGGGA
TCAATGCCCATGTGCTGGATGAGTTGAGGAAGGTTGGTCTGGCGCAAAGG
GAGGCAGAGGCACGAAGAATAGAGGAATTAATGCACAAAAGCAACGAGGC
AGCAGCGGCGGCTGTGTTTCGGCGGGCAAAAGAGGAGGAGGAGAAAGGGG
GGAATGGGGGAGCGACGACCCAAAGAGAGGGGAAGGAGATGCATGACGGG
CCGGAGGAAGAACCGGAGCAAGTAGAGGAAGGGAAGGCAGGAGACGCAGC
GGTAGCAGCTTCGGCGGCGGCAGCAGCAGCGGCGGCGTTGGGGATTGGGA
CATCGACGGAAGTGAAAGCCAAGTGGAAGAGGAGTACTCTGGCGGAATCG
CATTCGGACGAAAGCCTGTATCAGCTCCTTGTGAGGTTTGGCCCGATCAA
GAGAGTAGAGATGACGGGGATTAAGgtgagcaaagaaggattggaaggaa
ggagagattggtagcgggagtgtcatcacccaatcctcgcgtcatttata
tttaactttgctttcttacccccctcacgttccatccctccctcccccct
ttcctcctttttacctactatattacagGGCAACACAGCCACGATCATCT
TCGATGAACGTAGTGCTGCCGAGCGCGCAGTCGCCGCTTATGAATTCGAT
GCCAACATGCGTCTCTCCATCCCAGCCGACAGAAAATACAAACTTTTCCT
TCCTCAGGTGCTTAAACCGCCAGCAGCCGCGGGAGCAGGAGTAGCCGGAG
CAGGAGGAGTAGCAAGAGCAGGAGCAGGAACAAGAACAGGAGCAGCAGCT
GCAGGGAAACCATCGTCTTTGTTCATGGGCGTTTGGGGCGCAGGATCGGG
AGGTGCAGGGAATGGGGGAAAAGGAGCAGGAGGAGCAGCGGCAACAACAG
CAGCAGGATCGGCAACAAAAGTGAAGGAGGGGGATGTCTTGGCGCGCATG
CGAGCTGCGGCATCGGAACGTAAGCGAAGGCTGGAAGAACAGGCTGCTGC
TGCAGCAGCAGTAACTGTAGCAGTAAAGGGAGCAAGTGTAACGGCGGGGA
CAACGACAACAGAATCTTCGAATGTGGCGGAAGCGTCTGAAGCAGAGGGG
ATGAAGGTGATGGCAGCAGTGGGGAATGAGCAGGAAAAGGAGGCGGAAAG
AGAGGAGGAAAGACAAGTCGCTTGATTGAGAGCTGACGTTTTGGTCATGT
ACGATAAATAAAAATTAAAAATCACGTACGTGTCGACAGGAGTAAACTT

protein sequence of NO17G00350.1

>NO17G00350.1-protein ID=NO17G00350.1-protein|Name=NO17G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=481bp
MAGAKMDDDEKREDWFEVMGLSWDATADDVKDAYRKLALKYHPDKNQGDP
KAADRFMLVNKAKIYLADDDKRSKLSMKKKREAAREKRHTQRFAEMDAQR
KRFKSDLEAREAGEREKARMQRTSGGGAGGGGGGGGKGVGINAHVLDELR
KVGLAQREAEARRIEELMHKSNEAAAAAVFRRAKEEEEKGGNGGATTQRE
GKEMHDGPEEEPEQVEEGKAGDAAVAASAAAAAAAALGIGTSTEVKAKWK
RSTLAESHSDESLYQLLVRFGPIKRVEMTGIKGNTATIIFDERSAAERAV
AAYEFDANMRLSIPADRKYKLFLPQVLKPPAAAGAGVAGAGGVARAGAGT
RTGAAAAGKPSSLFMGVWGAGSGGAGNGGKGAGGAAATTAAGSATKVKEG
DVLARMRAAASERKRRLEEQAAAAAAVTVAVKGASVTAGTTTTESSNVAE
ASEAEGMKVMAAVGNEQEKEAEREEERQVA*

Synonyms

Publications