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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr17 | genome | chr17:128805..131353 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G00350.1 vs.
Match: EWM21194.1 (chaperone protein [Nannochloropsis gaditana]) HSP 1 Score: 374.4 bits (960), Expect = 5.300e-100 Identity = 218/322 (67.70%), Postives = 252/322 (78.26%), Query Frame = 0
Query: 1 MAGAKMDDDEKREDWFEVMGLSWDATADDVKDAYRKLALKYHPDKNQGDPKAADRFMLVNKAKIYLADDDKRSKLSMKKKREAAREKRHTQRFAEMDAQRKRFKSDLEAREAGEREKARMQRTSGGGAGGGGGGGGK-GVGINAHVLDELRKVGLAQREAEARRIEELMHKSNEAAAAAVFRRAKEEEEKGGNGGATTQREGKEMHDGP-EEEPEQVEEGKAGDAAVAASAAAAAAAALGIGTSTEVKAKWKRSTLAESHSDESLYQLLVRFGPIKRVEMTGIKGNTATIIFDERSAAERAVAAYEFDANMRLSIPADRKYK 321
MAGAK +DDEKREDWFEVMGLSWDATA++VKDAY+KLALKYHPDKN+GDPKAADRFMLV KAK +L+D+ KR +LS KK REAARE+RHTQRF EMDAQRKRFK DLEAREA ERE +R QR GGG G G G G + G GINAHVLDELR++G AQREAEARR+EEL+HKSN AA AA+ RRA E GG G +EG+ +G + E +V EG G A + + +G STEV+ KWKRS L ES SDESLYQLLVR+GPIK VEMTG+KGNTA ++F+ERS AERAVAAYEFDA MRL+IPAD+KY+
Sbjct: 1 MAGAKDEDDEKREDWFEVMGLSWDATAEEVKDAYKKLALKYHPDKNRGDPKAADRFMLVTKAKSFLSDEGKRRRLSEKKHREAAREQRHTQRFKEMDAQRKRFKGDLEAREAKEREASRRQRPGGGGRGPGQGAGEREGGGINAHVLDELRRMGQAQREAEARRMEELLHKSNAAAEAAMARRAAE----GGQGPGEAGKEGEGEGEGEGKREEREVGEGLKG--------APSGVSTRTMGASTEVRVKWKRSQLEESFSDESLYQLLVRYGPIKAVEMTGVKGNTAKVVFEERSGAERAVAAYEFDAGMRLTIPADKKYR 310
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G00350.1 ID=NO17G00350.1|Name=NO17G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2160bp
TGTCTTGTTTTGCTTCTTGTTTTGCTCGCCGTTGCGATACCTGTTACCGT
CAACATGGACGTCGAATTGGCTTTCTCCTTGTTTCTGCCGCCTTCGTGCC
TTGGCCGTCACAGCACTTTCTTTCACAAAATAATATGTCATAGCCTCCAA
GTGCTGCTTTTGCGCCTGGGAAACAGACATCCAGTGCCCTCCCTTGTCAT
ATATTTTCGGGGAACGGTAGAGGGAGAGGGAAAGGCGAATGGATAAGAAG
GAATGTGGCGCAAATTGCGTCTTTTTACCAGTCTCACAATGGCAATGAGT
TGGCTGCCTATGTTATAGCCTGATCATCCTGGGCCGCATAAATGTACGAA
AGAACGCATGGTCAAGAAGACAAGTGATTAACGGAGAACAAAAAAGGCGA
CGAAGCTCCGGCGGCCGTTGGCTCCAGCAAGAGGACGTTTCGATCGCATT
TCCACACACATCATCCGCTAACTCACTCACACACTGTCTTCCATTACCTG
TCCAGACAGGAAGCTTAGGGAGTGCCAAACAAGTCAACTGAGCTAATTGC
CGTTGGAACCAGTCTGTACCCTTACCTCCTCCCCTACTGGAGCCCCCATC
CCATAGGGCAAATCATAACACACCACACGGGCTACTTAGAACAATGGCAG
GCGCCAAGATGGATGACGACGAGAAACGGGAGGATTGGTTCGAAGTCATG
GGGCTTTCGTGGGATGCGACGGCGGACGACGTAAAGGATGCCTATAGGAA
ACTAGCTCTCAAATATCACCCGGATAAGAACCAAGGCGATCCTAAGGCCG
CCGATCGCTTTATGCTTGTAAATAAGGCCAAGATTTATTTAGCGGACGAT
GATAAACGCTCCAAGCTTTCCATGAAAAAGAAAAGGGAAGCGGCAAGGGA
GAAGAGGCACACGCAACGATTCGCGGAGATGGATGCGCAACGCAAAAGAT
TCAAGAGTGATTTGGAGGCCAGAGAAGCAGGGGAGAGGGAGAAAGCTCGA
ATGCAAAGAACATCAGGAGGAGGAGCAGGAGGAGGGGGGGGGGGAGGAGG
GAAGGGGGTAGGGATCAATGCCCATGTGCTGGATGAGTTGAGGAAGGTTG
GTCTGGCGCAAAGGGAGGCAGAGGCACGAAGAATAGAGGAATTAATGCAC
AAAAGCAACGAGGCAGCAGCGGCGGCTGTGTTTCGGCGGGCAAAAGAGGA
GGAGGAGAAAGGGGGGAATGGGGGAGCGACGACCCAAAGAGAGGGGAAGG
AGATGCATGACGGGCCGGAGGAAGAACCGGAGCAAGTAGAGGAAGGGAAG
GCAGGAGACGCAGCGGTAGCAGCTTCGGCGGCGGCAGCAGCAGCGGCGGC
GTTGGGGATTGGGACATCGACGGAAGTGAAAGCCAAGTGGAAGAGGAGTA
CTCTGGCGGAATCGCATTCGGACGAAAGCCTGTATCAGCTCCTTGTGAGG
TTTGGCCCGATCAAGAGAGTAGAGATGACGGGGATTAAGGGCAACACAGC
CACGATCATCTTCGATGAACGTAGTGCTGCCGAGCGCGCAGTCGCCGCTT
ATGAATTCGATGCCAACATGCGTCTCTCCATCCCAGCCGACAGAAAATAC
AAACTTTTCCTTCCTCAGGTGCTTAAACCGCCAGCAGCCGCGGGAGCAGG
AGTAGCCGGAGCAGGAGGAGTAGCAAGAGCAGGAGCAGGAACAAGAACAG
GAGCAGCAGCTGCAGGGAAACCATCGTCTTTGTTCATGGGCGTTTGGGGC
GCAGGATCGGGAGGTGCAGGGAATGGGGGAAAAGGAGCAGGAGGAGCAGC
GGCAACAACAGCAGCAGGATCGGCAACAAAAGTGAAGGAGGGGGATGTCT
TGGCGCGCATGCGAGCTGCGGCATCGGAACGTAAGCGAAGGCTGGAAGAA
CAGGCTGCTGCTGCAGCAGCAGTAACTGTAGCAGTAAAGGGAGCAAGTGT
AACGGCGGGGACAACGACAACAGAATCTTCGAATGTGGCGGAAGCGTCTG
AAGCAGAGGGGATGAAGGTGATGGCAGCAGTGGGGAATGAGCAGGAAAAG
GAGGCGGAAAGAGAGGAGGAAAGACAAGTCGCTTGATTGAGAGCTGACGT
TTTGGTCATGTACGATAAATAAAAATTAAAAATCACGTACGTGTCGACAG
GAGTAAACTT back to topprotein sequence of NO17G00350.1 >NO17G00350.1-protein ID=NO17G00350.1-protein|Name=NO17G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=481bp
MAGAKMDDDEKREDWFEVMGLSWDATADDVKDAYRKLALKYHPDKNQGDP
KAADRFMLVNKAKIYLADDDKRSKLSMKKKREAAREKRHTQRFAEMDAQR
KRFKSDLEAREAGEREKARMQRTSGGGAGGGGGGGGKGVGINAHVLDELR
KVGLAQREAEARRIEELMHKSNEAAAAAVFRRAKEEEEKGGNGGATTQRE
GKEMHDGPEEEPEQVEEGKAGDAAVAASAAAAAAAALGIGTSTEVKAKWK
RSTLAESHSDESLYQLLVRFGPIKRVEMTGIKGNTATIIFDERSAAERAV
AAYEFDANMRLSIPADRKYKLFLPQVLKPPAAAGAGVAGAGGVARAGAGT
RTGAAAAGKPSSLFMGVWGAGSGGAGNGGKGAGGAAATTAAGSATKVKEG
DVLARMRAAASERKRRLEEQAAAAAAVTVAVKGASVTAGTTTTESSNVAE
ASEAEGMKVMAAVGNEQEKEAEREEERQVA* back to topmRNA from alignment at chr17:128805..131353- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G00350.1 ID=NO17G00350.1|Name=NO17G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2549bp|location=Sequence derived from alignment at chr17:128805..131353- (Nannochloropsis oceanica)
TGTCTTGTTTTGCTTCTTGTTTTGCTCGCCGTTGCGATACCTGTTACCGT
CAACATGGACGTCGAATTGGCTTTCTCCTTGTTTCTGCCGCCTTCGTGCC
TTGGCCGTCACAGCACTTTCTTTCACAAAATAATATGTCATAGCCTCCAA
GTGCTGCTTTTGCGCCTGGGAAACAGACATCCAGTGCCCTCCCTTGTCAT
ATATTTTCGGGGAACGGTAGAGGGAGAGGGAAAGGCGAATGGATAAGAAG
GAATGTGGCGCAAATTGCGTCTTTTTACCAGTCTCACAATGGCAATGAGT
TGGCTGCCTATGTTATAGCCTGATCATCCTGGGCCGCATAAATGTACGAA
AGAACGCATGGTCAAGAAGACAAGTGATTAACGGAGAACAAAAAAGGCGA
CGAAGCTCCGGCGGCCGTTGGCTCCAGCAAGAGGACGTTTCGATCGCATT
TCCACACACATCATCCGCTAACTCACTCACACACTGTCTTCCATTACCTG
TCCAGACAGGAAGCTTAGGGAGTGCCAAACAAGTCAACTGAGCTAATTGC
CGTTGGAACCAGTCTGTACCCTTACCTCCTCCCCTACTGGAGCCCCCATC
CCATAGGGCAAATCATAACACACCACACGGGCTACTTAGAACAATGGCAG
GCGCCAAGATGGATGACGACGAGAAACGGGAGGATTGGTTCGAAGTCATG
GGGCTTTCGTGGGATGCGACGGCGGACGACGTAAAGGATGGTACGTGTGT
ATATGTGGTGCTTCGGGTGAATGGGGATGATCATCATCTTTCTCTACCAC
TTCATTACCTATTAGCTCGCCCTTGCTTATCTATATGTGTATCATACAAC
ACGTGTATTTCTAGGCTTCTCTCAGGACGCCTCTTTTTACCAACTTCCAA
CACCTTACCTACTGCCGACCACCTCATATCCCCCTTTCTTTCCTCTCTTC
ATCCCTCCTTCCCCTCCACTGTACAGCCTATAGGAAACTAGCTCTCAAAT
ATCACCCGGATAAGAACCAAGGCGATCCTAAGGCCGCCGATCGCTTTATG
CTTGTAAATAAGGCCAAGATTTATTTAGCGGACGATGATAAACGCTCCAA
GCTTTCCATGAAAAAGAAAAGGGAAGCGGCAAGGGAGAAGAGGCACACGC
AACGATTCGCGGAGATGGATGCGCAACGCAAAAGATTCAAGAGTGATTTG
GAGGCCAGAGAAGCAGGGGAGAGGGAGAAAGCTCGAATGCAAAGAACATC
AGGAGGAGGAGCAGGAGGAGGGGGGGGGGGAGGAGGGAAGGGGGTAGGGA
TCAATGCCCATGTGCTGGATGAGTTGAGGAAGGTTGGTCTGGCGCAAAGG
GAGGCAGAGGCACGAAGAATAGAGGAATTAATGCACAAAAGCAACGAGGC
AGCAGCGGCGGCTGTGTTTCGGCGGGCAAAAGAGGAGGAGGAGAAAGGGG
GGAATGGGGGAGCGACGACCCAAAGAGAGGGGAAGGAGATGCATGACGGG
CCGGAGGAAGAACCGGAGCAAGTAGAGGAAGGGAAGGCAGGAGACGCAGC
GGTAGCAGCTTCGGCGGCGGCAGCAGCAGCGGCGGCGTTGGGGATTGGGA
CATCGACGGAAGTGAAAGCCAAGTGGAAGAGGAGTACTCTGGCGGAATCG
CATTCGGACGAAAGCCTGTATCAGCTCCTTGTGAGGTTTGGCCCGATCAA
GAGAGTAGAGATGACGGGGATTAAGGTGAGCAAAGAAGGATTGGAAGGAA
GGAGAGATTGGTAGCGGGAGTGTCATCACCCAATCCTCGCGTCATTTATA
TTTAACTTTGCTTTCTTACCCCCCTCACGTTCCATCCCTCCCTCCCCCCT
TTCCTCCTTTTTACCTACTATATTACAGGGCAACACAGCCACGATCATCT
TCGATGAACGTAGTGCTGCCGAGCGCGCAGTCGCCGCTTATGAATTCGAT
GCCAACATGCGTCTCTCCATCCCAGCCGACAGAAAATACAAACTTTTCCT
TCCTCAGGTGCTTAAACCGCCAGCAGCCGCGGGAGCAGGAGTAGCCGGAG
CAGGAGGAGTAGCAAGAGCAGGAGCAGGAACAAGAACAGGAGCAGCAGCT
GCAGGGAAACCATCGTCTTTGTTCATGGGCGTTTGGGGCGCAGGATCGGG
AGGTGCAGGGAATGGGGGAAAAGGAGCAGGAGGAGCAGCGGCAACAACAG
CAGCAGGATCGGCAACAAAAGTGAAGGAGGGGGATGTCTTGGCGCGCATG
CGAGCTGCGGCATCGGAACGTAAGCGAAGGCTGGAAGAACAGGCTGCTGC
TGCAGCAGCAGTAACTGTAGCAGTAAAGGGAGCAAGTGTAACGGCGGGGA
CAACGACAACAGAATCTTCGAATGTGGCGGAAGCGTCTGAAGCAGAGGGG
ATGAAGGTGATGGCAGCAGTGGGGAATGAGCAGGAAAAGGAGGCGGAAAG
AGAGGAGGAAAGACAAGTCGCTTGATTGAGAGCTGACGTTTTGGTCATGT
ACGATAAATAAAAATTAAAAATCACGTACGTGTCGACAGGAGTAAACTT back to topCoding sequence (CDS) from alignment at chr17:128805..131353- >NO17G00350.1 ID=NO17G00350.1|Name=NO17G00350.1|organism=Nannochloropsis oceanica|type=CDS|length=1443bp|location=Sequence derived from alignment at chr17:128805..131353- (Nannochloropsis oceanica)
ATGGCAGGCGCCAAGATGGATGACGACGAGAAACGGGAGGATTGGTTCGA
AGTCATGGGGCTTTCGTGGGATGCGACGGCGGACGACGTAAAGGATGCCT
ATAGGAAACTAGCTCTCAAATATCACCCGGATAAGAACCAAGGCGATCCT
AAGGCCGCCGATCGCTTTATGCTTGTAAATAAGGCCAAGATTTATTTAGC
GGACGATGATAAACGCTCCAAGCTTTCCATGAAAAAGAAAAGGGAAGCGG
CAAGGGAGAAGAGGCACACGCAACGATTCGCGGAGATGGATGCGCAACGC
AAAAGATTCAAGAGTGATTTGGAGGCCAGAGAAGCAGGGGAGAGGGAGAA
AGCTCGAATGCAAAGAACATCAGGAGGAGGAGCAGGAGGAGGGGGGGGGG
GAGGAGGGAAGGGGGTAGGGATCAATGCCCATGTGCTGGATGAGTTGAGG
AAGGTTGGTCTGGCGCAAAGGGAGGCAGAGGCACGAAGAATAGAGGAATT
AATGCACAAAAGCAACGAGGCAGCAGCGGCGGCTGTGTTTCGGCGGGCAA
AAGAGGAGGAGGAGAAAGGGGGGAATGGGGGAGCGACGACCCAAAGAGAG
GGGAAGGAGATGCATGACGGGCCGGAGGAAGAACCGGAGCAAGTAGAGGA
AGGGAAGGCAGGAGACGCAGCGGTAGCAGCTTCGGCGGCGGCAGCAGCAG
CGGCGGCGTTGGGGATTGGGACATCGACGGAAGTGAAAGCCAAGTGGAAG
AGGAGTACTCTGGCGGAATCGCATTCGGACGAAAGCCTGTATCAGCTCCT
TGTGAGGTTTGGCCCGATCAAGAGAGTAGAGATGACGGGGATTAAGGGCA
ACACAGCCACGATCATCTTCGATGAACGTAGTGCTGCCGAGCGCGCAGTC
GCCGCTTATGAATTCGATGCCAACATGCGTCTCTCCATCCCAGCCGACAG
AAAATACAAACTTTTCCTTCCTCAGGTGCTTAAACCGCCAGCAGCCGCGG
GAGCAGGAGTAGCCGGAGCAGGAGGAGTAGCAAGAGCAGGAGCAGGAACA
AGAACAGGAGCAGCAGCTGCAGGGAAACCATCGTCTTTGTTCATGGGCGT
TTGGGGCGCAGGATCGGGAGGTGCAGGGAATGGGGGAAAAGGAGCAGGAG
GAGCAGCGGCAACAACAGCAGCAGGATCGGCAACAAAAGTGAAGGAGGGG
GATGTCTTGGCGCGCATGCGAGCTGCGGCATCGGAACGTAAGCGAAGGCT
GGAAGAACAGGCTGCTGCTGCAGCAGCAGTAACTGTAGCAGTAAAGGGAG
CAAGTGTAACGGCGGGGACAACGACAACAGAATCTTCGAATGTGGCGGAA
GCGTCTGAAGCAGAGGGGATGAAGGTGATGGCAGCAGTGGGGAATGAGCA
GGAAAAGGAGGCGGAAAGAGAGGAGGAAAGACAAGTCGCTTGA back to top
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