NO17G00310, NO17G00310 (gene) Nannochloropsis oceanica

Overview
NameNO17G00310
Unique NameNO17G00310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4231
Alignment locationchr17:115815..120045 -

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Properties
Property NameValue
DescriptionSmr MutS2 protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:115815..120045 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
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BLAST of NO17G00310 vs. NCBI_GenBank
Match: EWM21198.1 (Smr MutS2 protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 216.1 bits (549), Expect = 5.800e-52
Identity = 180/353 (50.99%), Postives = 208/353 (58.92%), Query Frame = 0 
Query:  758 AAQALFDRATLQGLRPSLEMHGALLDVYSKAGDIEGACRVFRNAFAQLQHXXXXXXXXXXXXXXXXXXXXXTAYNPPSYLYTSLVHAFTQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPFPTEGTREGERKEACWPAALYLMDEHRIWARSVQGKAKETTLPLLTAVARCLDAALPPSLYPRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLPPHWSARYRSSLDLHSSTRPLARAAIHTALNEIKKGHVTLAPEGLQIIVGRSSRVVREGVREALKEECSPPLEVEEGVGGNEGRMLVPLSSINAWLRCEWERERDA-GREGGREKARVDENYDVTTPR 1110
            AAQALFDRA  QGL PSLEM+GAL+DVY+K GD+ GACRVFR A   LQ                  XXXX                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     LYL +E+++  R        TT+PLLTAVAR LDAALPPS  PR+P                                     L  HWS RY SSLDLH  TRPLA+AA+HTAL EI++G VTLAPEGLQIIVG+SS+VVR GV+EAL EEC PPLEVEE VGGN+GR+LV L+S+NAWL  + E E    G+ GGR++A+V+  Y + TPR
Sbjct:    6 AAQALFDRAVGQGLCPSLEMYGALVDVYAKEGDVPGACRVFREALGHLQR---------------EGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYLFEEYQLGVR-----GNRTTIPLLTAVARSLDAALPPS-RPRAPPPFPLPTAILHVLYRRHAPLTP---------------LRSHWSYRYPSSLDLHLLTRPLAQAAVHTALEEIRQGEVTLAPEGLQIIVGKSSQVVRGGVKEALGEECRPPLEVEE-VGGNDGRLLVSLASVNAWLARQGEGEGGGDGKAGGRKEAKVNPAYTLETPR 321
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BLAST of NO17G00310 vs. NCBI_GenBank
Match: XP_005852385.1 (hypothetical protein NGA_0681100, partial [Nannochloropsis gaditana CCMP526] >EKU23447.1 hypothetical protein NGA_0681100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 89.4 bits (220), Expect = 8.200e-14
Identity = 40/83 (48.19%), Postives = 60/83 (72.29%), Query Frame = 0 
Query:  131 VFEKYVNVLDVPGLLRLLEYSSIPLDITVFTRAIAACGKANEPLKALGLLIEMKERGIAPDVLVYSLVAAAFANQGKWETVQA 214
            VF+KYV + D+P LLRL++ +S+PL++ +F R IAAC +  + +KALGL++EM+ERGI PD+ VY  +   F  QG+ + V A
Sbjct:   10 VFDKYVPLFDIPSLLRLVQQASLPLNLDIFKRTIAACVRNKDAVKALGLVVEMRERGIIPDLEVYETITGGFTQQGEPDVVLA 92
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BLAST of NO17G00310 vs. NCBI_GenBank
Match: CBJ28825.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 74.7 bits (182), Expect = 2.100e-9
Identity = 54/192 (28.12%), Postives = 89/192 (46.35%), Query Frame = 0 
Query:  546 ALNQLKRANDCYRTFLEMQKSNVTPDAYSFLQTIDACAKANQVIRALALLRSLPPALLPPDRRLYIIIAAACAKLGQWKTVTSLLYKDMQEKHSIPLDSNAYTCILTSFAVGGEWEQALLLMDSLEQKEDEDEGGKEGGQAPVSIGNYNALLAAVTRAGRVEEIDRTLARLERRGLKPDVFTYATAIKGYAR 738
            AL Q ++ +     F EMQ   ++PD ++    + AC        A  ++R L     P D R Y I  +  A+ G +  V   L  DM+ +   P     YT ++T++   GEWE+A  L + ++Q   E+        AP     YNAL++  T +GR++   +    +   GL+ D+ T+   I G+AR
Sbjct:  381 ALFQEEQYHLVLEMFREMQLFGLSPDGFAIKHCLQACDITEAYDAAAGVVRGLWKTGTPVDERAYTIAFSVLAR-GAYIGVIEDLMNDMETRGETP-GEGCYTSLITAYCKRGEWERAQALFEEMQQAPPEE------NIAPNQF-TYNALISVYTFSGRLDLATQKFTEMAEVGLQYDIRTFVNMILGFAR 563
The following BLAST results are available for this feature:
BLAST of NO17G00310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM21198.15.800e-5250.99Smr MutS2 protein, partial [Nannochloropsis gadita... [more]
XP_005852385.18.200e-1448.19hypothetical protein NGA_0681100, partial [Nannoch... [more]
CBJ28825.12.100e-928.13conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR005ncniR005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00310.1NO17G00310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|170667gene_7859Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|433091gene_11178Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101931g1gene9227Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00310.1NO17G00310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00310 ID=NO17G00310|Name=NO17G00310|organism=Nannochloropsis oceanica|type=gene|length=4231bp
ATGAGGTCAAGCAGCTCTGTAGCGGCGAGGCGTGGGTTGGCTGCCAGCCT
CTTCCCATTGACCTCCCCACAACCCCGCCATAGGGCTGCCTTTCTAGCCA
TCGCGCGACTGCTCACCACCCTGAAGACGCAAACGTCATCCCCATCATCG
CTGCCACGGACAGAAGAATGCAGGAACAAACCGCAGCAACCGAAGAAGGA
GGAGCAACCAAGGAAAAAAACAGCAAAAAAGCCGGCGCCAGAGGCCAGGA
AAATGAAGCCGCAACAGCAACACCAGTCGTACATAAAGCCGTCAGCTACG
ATGCCAGGAGATAGAAAACAGGATAGTCTAAAGAGTTATGAAAAAGGTGG
CAGTGGAACAGGAGGGGGAGGCGCAGGGGAGATGAGCAAGGTCTTCGAGA
AATATGTCAATGTCCTCGACGTGCCCGGgtacgtacttacgctagattgc
caccttccctccctttcttcctcccttccttacttacttaattccctttt
ccttccctatctatttagcatcgccttctttctctctcactcatcgctct
ccactccacattcctgcgtcaaacattacagcagcttactcattcctttt
ttcccttcctcccctcagCCTCCTCCGCCTCCTCGAATATTCCTCCATTC
CTCTTGACATCACAGTCTTCACGCGCGCCATCGCCGCTTGCGGCAAAGCC
AATGAACCGCTTAAGGCCCTGGGCTTGTTAATCGAAATGAAGGAGCGAGG
GATAGCACCTGACGTCCTAGTCTACTCCCTCGTTGCCGCCGCCTTCGCCA
ACCAAGGGAAATGGGAAACTGTCCAAGCCCTGATGCGAGGGATGGAGGGA
GGGAGCAAAGGAGGGAGGTTCGAGCCCAATGTGCATATGTACAATCACTT
GATCCGCGCCTACATAAAAGCAGATAAAAGAGACCACGCCCTGAGCGTAC
TCCAATTTATGAAGGAGGGAGGGAGGATGGGAGGGAAGAAGTCCTCTTCC
TCCTCCTCCTCCTCCTCCTCCTCCTTCTCGTCCTCCTCCTCCTCCTCCTT
AACATCCGCCCCCCTTCTTCCCTCCCTCGTCTCCCCTCCCCCCCCCGACC
GCGTCACGTACAACCTGCTCATCAATGCCTTTGCCGCCGCCAACGACACG
GACCTCGCCCTCTCCCTCGCCCGAGAGATGCGAGAGAAGCGACAGCTTAC
GTTTGATCGTTACACgtgcggggggttgcttgccgcgctcacaagggaag
gaagggcaggggaggctttggccctgctagaagaaatgaagcaaggaggg
tttaatcctccatcccacttacaagtagtcaatccacaccaacaacgaca
agGACAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGGAGGGAGGAAGGGAG
GGAGGGAGGGAGGGAGGGAGGGGGGGGGGAGGGCACCTACAAAGCGCCCG
CCATCCCAAGAAAATCCCAACCTCCTCCCCTCCTCCGACTCCTCCATCCG
CCTTTCCCCCTTCTCTCCCATCCTCCCCCTCTCCCTCCCTCCCTCCCTCC
TCCCCTCCGTCGCCTCCTCCTCCACCACCAACTCCCTCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCCTCCCTGCCTTGGCCCGTCGGATCGAGGC
CGCGGGCTTACCTCCTGACACATCGGCCTACACATGGTTGATGACGGTCT
ATAGAAACGAAGGGTTATGGGAAGATGTGCTACGGGTCTCCAAAGGCCTG
CAGCTCTTGCATAACAAGCAGCAGCAGCAACAACAACGACAACAACAGCA
TCGCGGACACCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGAGGGAGG
GGGAGGGAGGGAGGGAGGGAGGGAGGTCCTTGCCGCTGTTGGCTTGGAAT
TTAAGGTTGCAGGCACTGAACCAGCTCAAGCGTGCGAATGACTGCTATCG
GACGTTCCTGGAGATGCAAAAGTgtacgtcctcccccttcaatccctttc
tccttgtttggcagctgcactctactcaccacctatccctccctcccgtc
ctccctccctccctccctccctccctccctccctccctccctctctccct
ccctccctccctccctctttccctcccctccttcagCGAACGTCACTCCT
GATGCCTACTCCTTCTTGCAAACGATCGATGCCTGCGCTAAGGCCAATCA
GGTCATCCGCGCCCTCGCCCTCCTTCGGTCCCTCCCCCCTGCCCTCCTTC
CTCCTGACCGCCGCCTCTATATCATCATTGCCGCGGCGTGTGCGAAACTA
GGCCAGgcatgtcttcacccttattcctccctccctccctccctcccttc
ctcgtctccatgcagggagatcgcatttgacgactgattggattctttct
cccttccctctctcccgccctccctccttccctcccttcctccgtctttc
actacccccctccctacagTGGAAGACCGTCACCTCCCTTCTGTACAAGG
ACATGCAGGAGAAGCACAGTATTCCTCTCGACAGCAACGCCTACACCTGC
ATCCTCACCTCCTTCGCTGTCGGGGGGGAATGGGAGCAGGCCCTGCTCCT
CATGGACTCCCTCGAGCAAAAGGAGGACGAGGACGAGGGAGGGAAGGAGG
GAGGGCAGGCACCCGTTTCCATCGGGAATTACAATGCGCTTCTCGCGGCG
GTTACTAGAGCGGGAAGGGTGGAAGAGATCGATCGTACCCTAGCACGCCT
GGAGCGGAGGGGTCTGAAACCTGATGTGTTTACCTACGCCACTGCCATTA
AGGGATACGCGAGGGCCCCTCCCTCCCTTCCGTCCTCCTCCTCCTCCCCC
TCCTCACCGGGGGCGCAAATCGCCGCCGCCCAAGCGCTTTTTGACCGTGC
CACCCTTCAAGGCCTCCGTCCCTCCCTGGAGATGCACGGCGCCTTACTAG
ACGTATATTCCAAAGCTGGGGATATAGAGGGCGCCTGCCGCGTCTTCCGC
AATGCCTTTGCCCAGCTCCAGCACCAGGGGAGGAGGGAAGGGAGGAGGAT
GGGGGGGAAGGAGGGGGGACGGACGGGGGGGTTCTTCACGGCCTACAATC
CGCCTTCCTATCTATACACGAGTTTAGTGCATGCTTTCACACAAGCACAA
AACTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCACCGTCCTCACTCCTTCCCCCGTTTCCGACAG
AGGGCACGAGGGAGGGGGAGAGGAAGGAAGCATGTTGGCCTGCCGCGCTC
TACCTCATGGACGAGCATCGGATCTGGGCTCGATCCGTGCAAGGGAAGGC
AAAAGAGACGACCCTCCCCCTCCTCACCGCCGTCGCCCGCTGTCTGGATG
CCGCCCTCCCTCCCTCCCTCTACCCTCGATCCCCCCCTCCCTTCCTCCTC
CCTACCACCCTCCTGCACTCTCTCTATCAGTCTACCGTCTCTTCCTCCTC
TTCCTCTTCCTCCTCCTCCTCTTCCTCTTCCTCCTTCGCTCCCTTGCTCC
CTCCCCATTGGTCCGCCCGCTACCGTTCATCTCTTGACCTTCATTCCTCC
ACCCGTCCTCTAGCCCGTGCTGCCATCCACACGGCCTTGAACGAGATTAA
AAAAGGACATGTCACTCTAGCGCCGGAGGGCCTACAGATCATCGTGGGGA
GGAGCAGCCGGGTGGTAAGGGAGGGAGTGAGAGAGGCCTTAAAGGAGGAA
TGCTCGCCCCCCTTGGAGGTGGAAGAAGGGGTAGGGGGGAACGAGGGAAG
AATGTTGGTGCCTCTTTCGAGTATCAATGCGTGGTTGAGGTGCGAATGGG
AGAGAGAAAGGGATGCAGGGAGGGAGGGGGGGAGGGAGAAGGCGAGGGTG
GATGAGAACTATGATGTGACGACCCCGAGAAAGGGGTGGGCGTGGACGGA
GGAAGGGAGGGAGGGAGGGAAGATAAGCGTTTGGAGGGAAGGGGAGGGGG
AGGACGAGGAGGAGGTGGCGGTGGTGGAAGAGGGGGAGGGAAGGAGGCAA
GTTGGCGAGTAGATTGTTATGAGAAAGAGAGGGAGAAAAAAGGAAGGGGT
TGAGAGAAGGAGTCAAAGTAAATGTTCACTTAACAAAGCATTAAACGTGA
ATGAAATATTTATAAATAATGACACAAACGG
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protein sequence of NO17G00310.1

>NO17G00310.1-protein ID=NO17G00310.1-protein|Name=NO17G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1153bp
MRSSSSVAARRGLAASLFPLTSPQPRHRAAFLAIARLLTTLKTQTSSPSS
LPRTEECRNKPQQPKKEEQPRKKTAKKPAPEARKMKPQQQHQSYIKPSAT
MPGDRKQDSLKSYEKGGSGTGGGGAGEMSKVFEKYVNVLDVPGLLRLLEY
SSIPLDITVFTRAIAACGKANEPLKALGLLIEMKERGIAPDVLVYSLVAA
AFANQGKWETVQALMRGMEGGSKGGRFEPNVHMYNHLIRAYIKADKRDHA
LSVLQFMKEGGRMGGKKSSSSSSSSSSSFSSSSSSSLTSAPLLPSLVSPP
PPDRVTYNLLINAFAAANDTDLALSLAREMREKRQLTFDRYTTAAAAAAA
AAAAAAAAAAAAAATAAAAGGRKGGREGGREGGGRAPTKRPPSQENPNLL
PSSDSSIRLSPFSPILPLSLPPSLLPSVASSSTTNSLSSSSSSSSSSSLP
ALARRIEAAGLPPDTSAYTWLMTVYRNEGLWEDVLRVSKGLQLLHNKQQQ
QQQRQQQHRGHQQQQQQQQQQQREGEGGREGGRSLPLLAWNLRLQALNQL
KRANDCYRTFLEMQKSNVTPDAYSFLQTIDACAKANQVIRALALLRSLPP
ALLPPDRRLYIIIAAACAKLGQWKTVTSLLYKDMQEKHSIPLDSNAYTCI
LTSFAVGGEWEQALLLMDSLEQKEDEDEGGKEGGQAPVSIGNYNALLAAV
TRAGRVEEIDRTLARLERRGLKPDVFTYATAIKGYARAPPSLPSSSSSPS
SPGAQIAAAQALFDRATLQGLRPSLEMHGALLDVYSKAGDIEGACRVFRN
AFAQLQHQGRREGRRMGGKEGGRTGGFFTAYNPPSYLYTSLVHAFTQAQN
SSSSSSSSSSSSSSSSSSSSSSPSSLLPPFPTEGTREGERKEACWPAALY
LMDEHRIWARSVQGKAKETTLPLLTAVARCLDAALPPSLYPRSPPPFLLP
TTLLHSLYQSTVSSSSSSSSSSSSSSSFAPLLPPHWSARYRSSLDLHSST
RPLARAAIHTALNEIKKGHVTLAPEGLQIIVGRSSRVVREGVREALKEEC
SPPLEVEEGVGGNEGRMLVPLSSINAWLRCEWERERDAGREGGREKARVD
ENYDVTTPRKGWAWTEEGREGGKISVWREGEGEDEEEVAVVEEGEGRRQV
GE*
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Synonyms
Publications