NO17G00310.1, NO17G00310.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO17G00310.1
Unique Name	NO17G00310.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3578
Alignment location	chr17:115815..120045 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr17	genome	chr17:115815..120045 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO17G00310.1 vs.
Match: EWM21198.1 (Smr MutS2 protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 315.5 bits (807), Expect = 7.000e-82
Identity = 202/355 (56.90%), Postives = 239/355 (67.32%), Query Frame = 0

Query:  758 AAQALFDRATLQGLRPSLEMHGALLDVYSKAGDIEGACRVFRNAFAQLQHQGRREGRRMGGKEGGRTGGFFTAYNPPSYLYTSLVHAFTQAQNSSSSSSSSSSSSSSSSSSSSSSPSSLLPPFPTEGTREGERKEACWPAALYLMDEHRIWARSVQGKAKETTLPLLTAVARCLDAALPPSLYPRSPPPFLLPTTLLHSLYQSTVSSSSSSSSSSSSSSSFAPLLP--PHWSARYRSSLDLHSSTRPLARAAIHTALNEIKKGHVTLAPEGLQIIVGRSSRVVREGVREALKEECSPPLEVEEGVGGNEGRMLVPLSSINAWLRCEWERERDA-GREGGREKARVDENYDVTTPR 1110
            AAQALFDRA  QGL PSLEM+GAL+DVY+K GD+ GACRVFR A   LQ +GR+EG R GG+EGG+        NP SYLYTSL+HAF  A    S   S  SS  SS   SSS   + LP      + EGE   A WPAALYL +E+++  R        TT+PLLTAVAR LDAALPPS  PR+PPPF LPT +LH LY+                   APL P   HWS RY SSLDLH  TRPLA+AA+HTAL EI++G VTLAPEGLQIIVG+SS+VVR GV+EAL EEC PPLEVEE VGGN+GR+LV L+S+NAWL  + E E    G+ GGR++A+V+  Y + TPR
Sbjct:    6 AAQALFDRAVGQGLCPSLEMYGALVDVYAKEGDVPGACRVFREALGHLQREGRKEGGREGGREGGKD-------NPFSYLYTSLIHAFNTAPTPLSPPPSPGSSPPSSPLPSSSEGEAPLP-----SSSEGE---APWPAALYLFEEYQLGVRG-----NRTTIPLLTAVARSLDAALPPS-RPRAPPPFPLPTAILHVLYR-----------------RHAPLTPLRSHWSYRYPSSLDLHLLTRPLAQAAVHTALEEIRQGEVTLAPEGLQIIVGKSSQVVRGGVKEALGEECRPPLEVEE-VGGNDGRLLVSLASVNAWLARQGEGEGGGDGKAGGRKEAKVNPAYTLETPR 321

The following BLAST results are available for this feature:

BLAST of NO17G00310.1 vs.

BLAST of NO17G00310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21198.1	7.000e-82	56.90	Smr MutS2 protein, partial [Nannochloropsis gadita...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO17G00310	NO17G00310	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO17G00310.1	NO17G00310.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO17G00310.1.cds1	NO17G00310.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G00310.1.cds2	NO17G00310.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G00310.1.cds3	NO17G00310.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G00310.1.cds4	NO17G00310.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G00310.1.cds5	NO17G00310.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr17:115815..120045-
coding sequence from alignment at chr17:115815..120045-

mRNA sequence

>NO17G00310.1 ID=NO17G00310.1|Name=NO17G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=3578bp
ATGAGGTCAAGCAGCTCTGTAGCGGCGAGGCGTGGGTTGGCTGCCAGCCT
CTTCCCATTGACCTCCCCACAACCCCGCCATAGGGCTGCCTTTCTAGCCA
TCGCGCGACTGCTCACCACCCTGAAGACGCAAACGTCATCCCCATCATCG
CTGCCACGGACAGAAGAATGCAGGAACAAACCGCAGCAACCGAAGAAGGA
GGAGCAACCAAGGAAAAAAACAGCAAAAAAGCCGGCGCCAGAGGCCAGGA
AAATGAAGCCGCAACAGCAACACCAGTCGTACATAAAGCCGTCAGCTACG
ATGCCAGGAGATAGAAAACAGGATAGTCTAAAGAGTTATGAAAAAGGTGG
CAGTGGAACAGGAGGGGGAGGCGCAGGGGAGATGAGCAAGGTCTTCGAGA
AATATGTCAATGTCCTCGACGTGCCCGGCCTCCTCCGCCTCCTCGAATAT
TCCTCCATTCCTCTTGACATCACAGTCTTCACGCGCGCCATCGCCGCTTG
CGGCAAAGCCAATGAACCGCTTAAGGCCCTGGGCTTGTTAATCGAAATGA
AGGAGCGAGGGATAGCACCTGACGTCCTAGTCTACTCCCTCGTTGCCGCC
GCCTTCGCCAACCAAGGGAAATGGGAAACTGTCCAAGCCCTGATGCGAGG
GATGGAGGGAGGGAGCAAAGGAGGGAGGTTCGAGCCCAATGTGCATATGT
ACAATCACTTGATCCGCGCCTACATAAAAGCAGATAAAAGAGACCACGCC
CTGAGCGTACTCCAATTTATGAAGGAGGGAGGGAGGATGGGAGGGAAGAA
GTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCGTCCTCCTCCT
CCTCCTCCTTAACATCCGCCCCCCTTCTTCCCTCCCTCGTCTCCCCTCCC
CCCCCCGACCGCGTCACGTACAACCTGCTCATCAATGCCTTTGCCGCCGC
CAACGACACGGACCTCGCCCTCTCCCTCGCCCGAGAGATGCGAGAGAAGC
GACAGCTTACGTTTGATCGTTACACGACAGCGGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGC
AGCAGCAGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGGG
GGAGGGCACCTACAAAGCGCCCGCCATCCCAAGAAAATCCCAACCTCCTC
CCCTCCTCCGACTCCTCCATCCGCCTTTCCCCCTTCTCTCCCATCCTCCC
CCTCTCCCTCCCTCCCTCCCTCCTCCCCTCCGTCGCCTCCTCCTCCACCA
CCAACTCCCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCCCT
GCCTTGGCCCGTCGGATCGAGGCCGCGGGCTTACCTCCTGACACATCGGC
CTACACATGGTTGATGACGGTCTATAGAAACGAAGGGTTATGGGAAGATG
TGCTACGGGTCTCCAAAGGCCTGCAGCTCTTGCATAACAAGCAGCAGCAG
CAACAACAACGACAACAACAGCATCGCGGACACCAGCAGCAGCAGCAGCA
ACAGCAGCAACAGCAGAGGGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGT
CCTTGCCGCTGTTGGCTTGGAATTTAAGGTTGCAGGCACTGAACCAGCTC
AAGCGTGCGAATGACTGCTATCGGACGTTCCTGGAGATGCAAAAGTCGAA
CGTCACTCCTGATGCCTACTCCTTCTTGCAAACGATCGATGCCTGCGCTA
AGGCCAATCAGGTCATCCGCGCCCTCGCCCTCCTTCGGTCCCTCCCCCCT
GCCCTCCTTCCTCCTGACCGCCGCCTCTATATCATCATTGCCGCGGCGTG
TGCGAAACTAGGCCAGTGGAAGACCGTCACCTCCCTTCTGTACAAGGACA
TGCAGGAGAAGCACAGTATTCCTCTCGACAGCAACGCCTACACCTGCATC
CTCACCTCCTTCGCTGTCGGGGGGGAATGGGAGCAGGCCCTGCTCCTCAT
GGACTCCCTCGAGCAAAAGGAGGACGAGGACGAGGGAGGGAAGGAGGGAG
GGCAGGCACCCGTTTCCATCGGGAATTACAATGCGCTTCTCGCGGCGGTT
ACTAGAGCGGGAAGGGTGGAAGAGATCGATCGTACCCTAGCACGCCTGGA
GCGGAGGGGTCTGAAACCTGATGTGTTTACCTACGCCACTGCCATTAAGG
GATACGCGAGGGCCCCTCCCTCCCTTCCGTCCTCCTCCTCCTCCCCCTCC
TCACCGGGGGCGCAAATCGCCGCCGCCCAAGCGCTTTTTGACCGTGCCAC
CCTTCAAGGCCTCCGTCCCTCCCTGGAGATGCACGGCGCCTTACTAGACG
TATATTCCAAAGCTGGGGATATAGAGGGCGCCTGCCGCGTCTTCCGCAAT
GCCTTTGCCCAGCTCCAGCACCAGGGGAGGAGGGAAGGGAGGAGGATGGG
GGGGAAGGAGGGGGGACGGACGGGGGGGTTCTTCACGGCCTACAATCCGC
CTTCCTATCTATACACGAGTTTAGTGCATGCTTTCACACAAGCACAAAAC
TCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCACCGTCCTCACTCCTTCCCCCGTTTCCGACAGAGG
GCACGAGGGAGGGGGAGAGGAAGGAAGCATGTTGGCCTGCCGCGCTCTAC
CTCATGGACGAGCATCGGATCTGGGCTCGATCCGTGCAAGGGAAGGCAAA
AGAGACGACCCTCCCCCTCCTCACCGCCGTCGCCCGCTGTCTGGATGCCG
CCCTCCCTCCCTCCCTCTACCCTCGATCCCCCCCTCCCTTCCTCCTCCCT
ACCACCCTCCTGCACTCTCTCTATCAGTCTACCGTCTCTTCCTCCTCTTC
CTCTTCCTCCTCCTCCTCTTCCTCTTCCTCCTTCGCTCCCTTGCTCCCTC
CCCATTGGTCCGCCCGCTACCGTTCATCTCTTGACCTTCATTCCTCCACC
CGTCCTCTAGCCCGTGCTGCCATCCACACGGCCTTGAACGAGATTAAAAA
AGGACATGTCACTCTAGCGCCGGAGGGCCTACAGATCATCGTGGGGAGGA
GCAGCCGGGTGGTAAGGGAGGGAGTGAGAGAGGCCTTAAAGGAGGAATGC
TCGCCCCCCTTGGAGGTGGAAGAAGGGGTAGGGGGGAACGAGGGAAGAAT
GTTGGTGCCTCTTTCGAGTATCAATGCGTGGTTGAGGTGCGAATGGGAGA
GAGAAAGGGATGCAGGGAGGGAGGGGGGGAGGGAGAAGGCGAGGGTGGAT
GAGAACTATGATGTGACGACCCCGAGAAAGGGGTGGGCGTGGACGGAGGA
AGGGAGGGAGGGAGGGAAGATAAGCGTTTGGAGGGAAGGGGAGGGGGAGG
ACGAGGAGGAGGTGGCGGTGGTGGAAGAGGGGGAGGGAAGGAGGCAAGTT
GGCGAGTAGATTGTTATGAGAAAGAGAGGGAGAAAAAAGGAAGGGGTTGA
GAGAAGGAGTCAAAGTAAATGTTCACTTAACAAAGCATTAAACGTGAATG
AAATATTTATAAATAATGACACAAACGG

protein sequence of NO17G00310.1

>NO17G00310.1-protein ID=NO17G00310.1-protein|Name=NO17G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1153bp
MRSSSSVAARRGLAASLFPLTSPQPRHRAAFLAIARLLTTLKTQTSSPSS
LPRTEECRNKPQQPKKEEQPRKKTAKKPAPEARKMKPQQQHQSYIKPSAT
MPGDRKQDSLKSYEKGGSGTGGGGAGEMSKVFEKYVNVLDVPGLLRLLEY
SSIPLDITVFTRAIAACGKANEPLKALGLLIEMKERGIAPDVLVYSLVAA
AFANQGKWETVQALMRGMEGGSKGGRFEPNVHMYNHLIRAYIKADKRDHA
LSVLQFMKEGGRMGGKKSSSSSSSSSSSFSSSSSSSLTSAPLLPSLVSPP
PPDRVTYNLLINAFAAANDTDLALSLAREMREKRQLTFDRYTTAAAAAAA
AAAAAAAAAAAAAATAAAAGGRKGGREGGREGGGRAPTKRPPSQENPNLL
PSSDSSIRLSPFSPILPLSLPPSLLPSVASSSTTNSLSSSSSSSSSSSLP
ALARRIEAAGLPPDTSAYTWLMTVYRNEGLWEDVLRVSKGLQLLHNKQQQ
QQQRQQQHRGHQQQQQQQQQQQREGEGGREGGRSLPLLAWNLRLQALNQL
KRANDCYRTFLEMQKSNVTPDAYSFLQTIDACAKANQVIRALALLRSLPP
ALLPPDRRLYIIIAAACAKLGQWKTVTSLLYKDMQEKHSIPLDSNAYTCI
LTSFAVGGEWEQALLLMDSLEQKEDEDEGGKEGGQAPVSIGNYNALLAAV
TRAGRVEEIDRTLARLERRGLKPDVFTYATAIKGYARAPPSLPSSSSSPS
SPGAQIAAAQALFDRATLQGLRPSLEMHGALLDVYSKAGDIEGACRVFRN
AFAQLQHQGRREGRRMGGKEGGRTGGFFTAYNPPSYLYTSLVHAFTQAQN
SSSSSSSSSSSSSSSSSSSSSSPSSLLPPFPTEGTREGERKEACWPAALY
LMDEHRIWARSVQGKAKETTLPLLTAVARCLDAALPPSLYPRSPPPFLLP
TTLLHSLYQSTVSSSSSSSSSSSSSSSFAPLLPPHWSARYRSSLDLHSST
RPLARAAIHTALNEIKKGHVTLAPEGLQIIVGRSSRVVREGVREALKEEC
SPPLEVEEGVGGNEGRMLVPLSSINAWLRCEWERERDAGREGGREKARVD
ENYDVTTPRKGWAWTEEGREGGKISVWREGEGEDEEEVAVVEEGEGRRQV
GE*

mRNA from alignment at chr17:115815..120045-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO17G00310.1 ID=NO17G00310.1|Name=NO17G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=4231bp|location=Sequence derived from alignment at chr17:115815..120045- (Nannochloropsis oceanica)
ATGAGGTCAAGCAGCTCTGTAGCGGCGAGGCGTGGGTTGGCTGCCAGCCT
CTTCCCATTGACCTCCCCACAACCCCGCCATAGGGCTGCCTTTCTAGCCA
TCGCGCGACTGCTCACCACCCTGAAGACGCAAACGTCATCCCCATCATCG
CTGCCACGGACAGAAGAATGCAGGAACAAACCGCAGCAACCGAAGAAGGA
GGAGCAACCAAGGAAAAAAACAGCAAAAAAGCCGGCGCCAGAGGCCAGGA
AAATGAAGCCGCAACAGCAACACCAGTCGTACATAAAGCCGTCAGCTACG
ATGCCAGGAGATAGAAAACAGGATAGTCTAAAGAGTTATGAAAAAGGTGG
CAGTGGAACAGGAGGGGGAGGCGCAGGGGAGATGAGCAAGGTCTTCGAGA
AATATGTCAATGTCCTCGACGTGCCCGGGTACGTACTTACGCTAGATTGC
CACCTTCCCTCCCTTTCTTCCTCCCTTCCTTACTTACTTAATTCCCTTTT
CCTTCCCTATCTATTTAGCATCGCCTTCTTTCTCTCTCACTCATCGCTCT
CCACTCCACATTCCTGCGTCAAACATTACAGCAGCTTACTCATTCCTTTT
TTCCCTTCCTCCCCTCAGCCTCCTCCGCCTCCTCGAATATTCCTCCATTC
CTCTTGACATCACAGTCTTCACGCGCGCCATCGCCGCTTGCGGCAAAGCC
AATGAACCGCTTAAGGCCCTGGGCTTGTTAATCGAAATGAAGGAGCGAGG
GATAGCACCTGACGTCCTAGTCTACTCCCTCGTTGCCGCCGCCTTCGCCA
ACCAAGGGAAATGGGAAACTGTCCAAGCCCTGATGCGAGGGATGGAGGGA
GGGAGCAAAGGAGGGAGGTTCGAGCCCAATGTGCATATGTACAATCACTT
GATCCGCGCCTACATAAAAGCAGATAAAAGAGACCACGCCCTGAGCGTAC
TCCAATTTATGAAGGAGGGAGGGAGGATGGGAGGGAAGAAGTCCTCTTCC
TCCTCCTCCTCCTCCTCCTCCTCCTTCTCGTCCTCCTCCTCCTCCTCCTT
AACATCCGCCCCCCTTCTTCCCTCCCTCGTCTCCCCTCCCCCCCCCGACC
GCGTCACGTACAACCTGCTCATCAATGCCTTTGCCGCCGCCAACGACACG
GACCTCGCCCTCTCCCTCGCCCGAGAGATGCGAGAGAAGCGACAGCTTAC
GTTTGATCGTTACACGTGCGGGGGGTTGCTTGCCGCGCTCACAAGGGAAG
GAAGGGCAGGGGAGGCTTTGGCCCTGCTAGAAGAAATGAAGCAAGGAGGG
TTTAATCCTCCATCCCACTTACAAGTAGTCAATCCACACCAACAACGACA
AGGACAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGGAGGGAGGAAGGGAG
GGAGGGAGGGAGGGAGGGAGGGGGGGGGGAGGGCACCTACAAAGCGCCCG
CCATCCCAAGAAAATCCCAACCTCCTCCCCTCCTCCGACTCCTCCATCCG
CCTTTCCCCCTTCTCTCCCATCCTCCCCCTCTCCCTCCCTCCCTCCCTCC
TCCCCTCCGTCGCCTCCTCCTCCACCACCAACTCCCTCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCCTCCCTGCCTTGGCCCGTCGGATCGAGGC
CGCGGGCTTACCTCCTGACACATCGGCCTACACATGGTTGATGACGGTCT
ATAGAAACGAAGGGTTATGGGAAGATGTGCTACGGGTCTCCAAAGGCCTG
CAGCTCTTGCATAACAAGCAGCAGCAGCAACAACAACGACAACAACAGCA
TCGCGGACACCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGAGGGAGG
GGGAGGGAGGGAGGGAGGGAGGGAGGTCCTTGCCGCTGTTGGCTTGGAAT
TTAAGGTTGCAGGCACTGAACCAGCTCAAGCGTGCGAATGACTGCTATCG
GACGTTCCTGGAGATGCAAAAGTGTACGTCCTCCCCCTTCAATCCCTTTC
TCCTTGTTTGGCAGCTGCACTCTACTCACCACCTATCCCTCCCTCCCGTC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCT
CCCTCCCTCCCTCCCTCTTTCCCTCCCCTCCTTCAGCGAACGTCACTCCT
GATGCCTACTCCTTCTTGCAAACGATCGATGCCTGCGCTAAGGCCAATCA
GGTCATCCGCGCCCTCGCCCTCCTTCGGTCCCTCCCCCCTGCCCTCCTTC
CTCCTGACCGCCGCCTCTATATCATCATTGCCGCGGCGTGTGCGAAACTA
GGCCAGGCATGTCTTCACCCTTATTCCTCCCTCCCTCCCTCCCTCCCTTC
CTCGTCTCCATGCAGGGAGATCGCATTTGACGACTGATTGGATTCTTTCT
CCCTTCCCTCTCTCCCGCCCTCCCTCCTTCCCTCCCTTCCTCCGTCTTTC
ACTACCCCCCTCCCTACAGTGGAAGACCGTCACCTCCCTTCTGTACAAGG
ACATGCAGGAGAAGCACAGTATTCCTCTCGACAGCAACGCCTACACCTGC
ATCCTCACCTCCTTCGCTGTCGGGGGGGAATGGGAGCAGGCCCTGCTCCT
CATGGACTCCCTCGAGCAAAAGGAGGACGAGGACGAGGGAGGGAAGGAGG
GAGGGCAGGCACCCGTTTCCATCGGGAATTACAATGCGCTTCTCGCGGCG
GTTACTAGAGCGGGAAGGGTGGAAGAGATCGATCGTACCCTAGCACGCCT
GGAGCGGAGGGGTCTGAAACCTGATGTGTTTACCTACGCCACTGCCATTA
AGGGATACGCGAGGGCCCCTCCCTCCCTTCCGTCCTCCTCCTCCTCCCCC
TCCTCACCGGGGGCGCAAATCGCCGCCGCCCAAGCGCTTTTTGACCGTGC
CACCCTTCAAGGCCTCCGTCCCTCCCTGGAGATGCACGGCGCCTTACTAG
ACGTATATTCCAAAGCTGGGGATATAGAGGGCGCCTGCCGCGTCTTCCGC
AATGCCTTTGCCCAGCTCCAGCACCAGGGGAGGAGGGAAGGGAGGAGGAT
GGGGGGGAAGGAGGGGGGACGGACGGGGGGGTTCTTCACGGCCTACAATC
CGCCTTCCTATCTATACACGAGTTTAGTGCATGCTTTCACACAAGCACAA
AACTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCACCGTCCTCACTCCTTCCCCCGTTTCCGACAG
AGGGCACGAGGGAGGGGGAGAGGAAGGAAGCATGTTGGCCTGCCGCGCTC
TACCTCATGGACGAGCATCGGATCTGGGCTCGATCCGTGCAAGGGAAGGC
AAAAGAGACGACCCTCCCCCTCCTCACCGCCGTCGCCCGCTGTCTGGATG
CCGCCCTCCCTCCCTCCCTCTACCCTCGATCCCCCCCTCCCTTCCTCCTC
CCTACCACCCTCCTGCACTCTCTCTATCAGTCTACCGTCTCTTCCTCCTC
TTCCTCTTCCTCCTCCTCCTCTTCCTCTTCCTCCTTCGCTCCCTTGCTCC
CTCCCCATTGGTCCGCCCGCTACCGTTCATCTCTTGACCTTCATTCCTCC
ACCCGTCCTCTAGCCCGTGCTGCCATCCACACGGCCTTGAACGAGATTAA
AAAAGGACATGTCACTCTAGCGCCGGAGGGCCTACAGATCATCGTGGGGA
GGAGCAGCCGGGTGGTAAGGGAGGGAGTGAGAGAGGCCTTAAAGGAGGAA
TGCTCGCCCCCCTTGGAGGTGGAAGAAGGGGTAGGGGGGAACGAGGGAAG
AATGTTGGTGCCTCTTTCGAGTATCAATGCGTGGTTGAGGTGCGAATGGG
AGAGAGAAAGGGATGCAGGGAGGGAGGGGGGGAGGGAGAAGGCGAGGGTG
GATGAGAACTATGATGTGACGACCCCGAGAAAGGGGTGGGCGTGGACGGA
GGAAGGGAGGGAGGGAGGGAAGATAAGCGTTTGGAGGGAAGGGGAGGGGG
AGGACGAGGAGGAGGTGGCGGTGGTGGAAGAGGGGGAGGGAAGGAGGCAA
GTTGGCGAGTAGATTGTTATGAGAAAGAGAGGGAGAAAAAAGGAAGGGGT
TGAGAGAAGGAGTCAAAGTAAATGTTCACTTAACAAAGCATTAAACGTGA
ATGAAATATTTATAAATAATGACACAAACGG

Coding sequence (CDS) from alignment at chr17:115815..120045-

>NO17G00310.1 ID=NO17G00310.1|Name=NO17G00310.1|organism=Nannochloropsis oceanica|type=CDS|length=3459bp|location=Sequence derived from alignment at chr17:115815..120045- (Nannochloropsis oceanica)
ATGAGGTCAAGCAGCTCTGTAGCGGCGAGGCGTGGGTTGGCTGCCAGCCT
CTTCCCATTGACCTCCCCACAACCCCGCCATAGGGCTGCCTTTCTAGCCA
TCGCGCGACTGCTCACCACCCTGAAGACGCAAACGTCATCCCCATCATCG
CTGCCACGGACAGAAGAATGCAGGAACAAACCGCAGCAACCGAAGAAGGA
GGAGCAACCAAGGAAAAAAACAGCAAAAAAGCCGGCGCCAGAGGCCAGGA
AAATGAAGCCGCAACAGCAACACCAGTCGTACATAAAGCCGTCAGCTACG
ATGCCAGGAGATAGAAAACAGGATAGTCTAAAGAGTTATGAAAAAGGTGG
CAGTGGAACAGGAGGGGGAGGCGCAGGGGAGATGAGCAAGGTCTTCGAGA
AATATGTCAATGTCCTCGACGTGCCCGGCCTCCTCCGCCTCCTCGAATAT
TCCTCCATTCCTCTTGACATCACAGTCTTCACGCGCGCCATCGCCGCTTG
CGGCAAAGCCAATGAACCGCTTAAGGCCCTGGGCTTGTTAATCGAAATGA
AGGAGCGAGGGATAGCACCTGACGTCCTAGTCTACTCCCTCGTTGCCGCC
GCCTTCGCCAACCAAGGGAAATGGGAAACTGTCCAAGCCCTGATGCGAGG
GATGGAGGGAGGGAGCAAAGGAGGGAGGTTCGAGCCCAATGTGCATATGT
ACAATCACTTGATCCGCGCCTACATAAAAGCAGATAAAAGAGACCACGCC
CTGAGCGTACTCCAATTTATGAAGGAGGGAGGGAGGATGGGAGGGAAGAA
GTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCGTCCTCCTCCT
CCTCCTCCTTAACATCCGCCCCCCTTCTTCCCTCCCTCGTCTCCCCTCCC
CCCCCCGACCGCGTCACGTACAACCTGCTCATCAATGCCTTTGCCGCCGC
CAACGACACGGACCTCGCCCTCTCCCTCGCCCGAGAGATGCGAGAGAAGC
GACAGCTTACGTTTGATCGTTACACGACAGCGGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGC
AGCAGCAGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGGG
GGAGGGCACCTACAAAGCGCCCGCCATCCCAAGAAAATCCCAACCTCCTC
CCCTCCTCCGACTCCTCCATCCGCCTTTCCCCCTTCTCTCCCATCCTCCC
CCTCTCCCTCCCTCCCTCCCTCCTCCCCTCCGTCGCCTCCTCCTCCACCA
CCAACTCCCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCCCT
GCCTTGGCCCGTCGGATCGAGGCCGCGGGCTTACCTCCTGACACATCGGC
CTACACATGGTTGATGACGGTCTATAGAAACGAAGGGTTATGGGAAGATG
TGCTACGGGTCTCCAAAGGCCTGCAGCTCTTGCATAACAAGCAGCAGCAG
CAACAACAACGACAACAACAGCATCGCGGACACCAGCAGCAGCAGCAGCA
ACAGCAGCAACAGCAGAGGGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGT
CCTTGCCGCTGTTGGCTTGGAATTTAAGGTTGCAGGCACTGAACCAGCTC
AAGCGTGCGAATGACTGCTATCGGACGTTCCTGGAGATGCAAAAGTCGAA
CGTCACTCCTGATGCCTACTCCTTCTTGCAAACGATCGATGCCTGCGCTA
AGGCCAATCAGGTCATCCGCGCCCTCGCCCTCCTTCGGTCCCTCCCCCCT
GCCCTCCTTCCTCCTGACCGCCGCCTCTATATCATCATTGCCGCGGCGTG
TGCGAAACTAGGCCAGTGGAAGACCGTCACCTCCCTTCTGTACAAGGACA
TGCAGGAGAAGCACAGTATTCCTCTCGACAGCAACGCCTACACCTGCATC
CTCACCTCCTTCGCTGTCGGGGGGGAATGGGAGCAGGCCCTGCTCCTCAT
GGACTCCCTCGAGCAAAAGGAGGACGAGGACGAGGGAGGGAAGGAGGGAG
GGCAGGCACCCGTTTCCATCGGGAATTACAATGCGCTTCTCGCGGCGGTT
ACTAGAGCGGGAAGGGTGGAAGAGATCGATCGTACCCTAGCACGCCTGGA
GCGGAGGGGTCTGAAACCTGATGTGTTTACCTACGCCACTGCCATTAAGG
GATACGCGAGGGCCCCTCCCTCCCTTCCGTCCTCCTCCTCCTCCCCCTCC
TCACCGGGGGCGCAAATCGCCGCCGCCCAAGCGCTTTTTGACCGTGCCAC
CCTTCAAGGCCTCCGTCCCTCCCTGGAGATGCACGGCGCCTTACTAGACG
TATATTCCAAAGCTGGGGATATAGAGGGCGCCTGCCGCGTCTTCCGCAAT
GCCTTTGCCCAGCTCCAGCACCAGGGGAGGAGGGAAGGGAGGAGGATGGG
GGGGAAGGAGGGGGGACGGACGGGGGGGTTCTTCACGGCCTACAATCCGC
CTTCCTATCTATACACGAGTTTAGTGCATGCTTTCACACAAGCACAAAAC
TCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCACCGTCCTCACTCCTTCCCCCGTTTCCGACAGAGG
GCACGAGGGAGGGGGAGAGGAAGGAAGCATGTTGGCCTGCCGCGCTCTAC
CTCATGGACGAGCATCGGATCTGGGCTCGATCCGTGCAAGGGAAGGCAAA
AGAGACGACCCTCCCCCTCCTCACCGCCGTCGCCCGCTGTCTGGATGCCG
CCCTCCCTCCCTCCCTCTACCCTCGATCCCCCCCTCCCTTCCTCCTCCCT
ACCACCCTCCTGCACTCTCTCTATCAGTCTACCGTCTCTTCCTCCTCTTC
CTCTTCCTCCTCCTCCTCTTCCTCTTCCTCCTTCGCTCCCTTGCTCCCTC
CCCATTGGTCCGCCCGCTACCGTTCATCTCTTGACCTTCATTCCTCCACC
CGTCCTCTAGCCCGTGCTGCCATCCACACGGCCTTGAACGAGATTAAAAA
AGGACATGTCACTCTAGCGCCGGAGGGCCTACAGATCATCGTGGGGAGGA
GCAGCCGGGTGGTAAGGGAGGGAGTGAGAGAGGCCTTAAAGGAGGAATGC
TCGCCCCCCTTGGAGGTGGAAGAAGGGGTAGGGGGGAACGAGGGAAGAAT
GTTGGTGCCTCTTTCGAGTATCAATGCGTGGTTGAGGTGCGAATGGGAGA
GAGAAAGGGATGCAGGGAGGGAGGGGGGGAGGGAGAAGGCGAGGGTGGAT
GAGAACTATGATGTGACGACCCCGAGAAAGGGGTGGGCGTGGACGGAGGA
AGGGAGGGAGGGAGGGAAGATAAGCGTTTGGAGGGAAGGGGAGGGGGAGG
ACGAGGAGGAGGTGGCGGTGGTGGAAGAGGGGGAGGGAAGGAGGCAAGTT
GGCGAGTAG

Synonyms

Publications