NO16G03140, NO16G03140 (gene) Nannochloropsis oceanica

Overview
NameNO16G03140
Unique NameNO16G03140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2154
Alignment locationchr16:932740..934893 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:932740..934893 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G03140 vs. NCBI_GenBank
Match: XP_005853972.1 (hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526] >EKU22388.1 hypothetical protein NGA_0434301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 90.1 bits (222), Expect = 1.000e-14
Identity = 66/183 (36.07%), Postives = 98/183 (53.55%), Query Frame = 0 
Query:   51 SSVLLAGVALLSAMSAVSGSGHVQTGAKSVLVKKGRIVTVTQRFVAQSFNVGRRLVDVQEPVMAGLTTDPEGEFDFGFGPFSSTNKTKRXXXXXXXXXKWADDVGITIKSAKILPNTWKPKVSANMTSTVDGDYAIFELPQDGLDLNREYKIVYKVRVGRGIPSGTFIELPYNFDGISFGDDF 234
            SS+L+A   LLS  +A   +G V    KS+ VK GR  T+T      SF +     +V E V+ G+T +P         P SS N T +         K+A DV +T++  +I PNTW+PK+ AN T T     +   +P +GL L+++YK+  K+R+G+GIPSGT++  P+       G DF
Sbjct:    5 SSLLVAVATLLSNAAAQEYTGSV--CVKSLSVKAGRQATIT-----TSFLISEVPNNVTE-VLYGITVEPL------VSPLSSKNHTAK-----NKTSKFAGDVDVTLRKTRISPNTWRPKIFANGTGT---GTSFLPMPLNGLVLSKQYKVTSKIRIGKGIPSGTYV--PFQIFVDLVGGDF 163
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BLAST of NO16G03140 vs. NCBI_GenBank
Match: EWM22885.1 (hypothetical protein Naga_100160g3 [Nannochloropsis gaditana])

HSP 1 Score: 88.6 bits (218), Expect = 2.900e-14
Identity = 64/177 (36.16%), Postives = 92/177 (51.98%), Query Frame = 0 
Query:   42 PITTMKLTVSSVLLAGVALLSAMSAVSGSGHVQTGAKSVLVKKGRIVTVTQRFVAQSFNVGRRLVDVQEPVMAGLTTDPEGEFDFGFGPFSSTNKTKRXXXXXXXXXKWADDVGITIKSAKILPNTWKPKVSANMTSTVDGDYAIFELPQDGLDLNREYKIVYKVRVGRGIPSGTFI 219
            P   MK+  SS+L+A   LLS  +A   +G V    KS+ VK GR  T+T  F+         L D       G+T +P       +   ++ NKT           K+A DV +T++  +I PNTW+PK  AN T T     +   LP DGL L+++YKI  K+R+G+GIPSGT++
Sbjct:   17 PFAIMKV-FSSLLVAVATLLSNAAAQEYTGSV--CVKSLSVKAGRQATITTSFLIS------ELPDTVTEAFYGITVEPLVN-SLSWKNHTAKNKTS----------KFAGDVDVTLRKTRISPNTWRPKTFANGTGT---GTSFLPLPLDGLVLSKQYKITSKIRIGKGIPSGTYV 170
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BLAST of NO16G03140 vs. NCBI_GenBank
Match: EWM22729.1 (hypothetical protein Naga_100561g2 [Nannochloropsis gaditana] >EWM22730.1 hypothetical protein Naga_100561g2 [Nannochloropsis gaditana])

HSP 1 Score: 75.1 bits (183), Expect = 3.300e-10
Identity = 48/151 (31.79%), Postives = 73/151 (48.34%), Query Frame = 0 
Query:   73 VQTGAKSVLVKKGRIVTVTQRFVAQSFNVGRRLVDVQEP---VMAGLTTDPEGEFDFGFGPFSSTNKTKRXXXXXXXXXKWADDVGITIKSAKILPNTWKPKVSANMTSTVDGDYAIFELPQDGLDLNREYKIVYKVRVGRGIPSGTFIEL 221
            +Q  A  +  + G+ V VT   V      GR       P   ++   + DP     F F   ++ NKT +         K   DVGI+   +KI PNTW+PK++  +    +GD  ++ LP DG  L ++YKI   +R+G+ +PSGT I L
Sbjct:  189 IQARAHPLFARAGKTVRVTADLVVLDDQPGRERAVRALPTADIVFACSLDP----FFNFQSLTAGNKTSK-------HRKDGTDVGISFSRSKIAPNTWRPKITYEIVD--EGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPL 326
[Close]
BLAST of NO16G03140 vs. NCBI_GenBank
Match: EWM22739.1 (hypothetical protein Naga_100209g9 [Nannochloropsis gaditana])

HSP 1 Score: 73.6 bits (179), Expect = 9.700e-10
Identity = 50/153 (32.68%), Postives = 77/153 (50.33%), Query Frame = 0 
Query:   73 VQTGAKSVLVKKGRIVTVTQRFVA-QSFNVGR----RLVDVQEPVMAGLTTDPEGEFDFGFGPFSSTNKTKRXXXXXXXXXKWADDVGITIKSAKILPNTWKPKVSANMTSTVDGDYAIFELPQDGLDLNREYKIVYKVRVGRGIPSGTFIEL 221
            +Q  A  +  + G+ V VT   V      +GR    R ++  + V A  + DP     F F   ++ NKT +         K   DVGI+   +KI PNTW+PK++  +    +GD  ++ LP DG  L ++YKI   +R+G+ +PSGT I L
Sbjct:  188 IQARAHHLFARAGKTVRVTADLVVLDDQPIGRKRAVRALETDDIVFA-CSLDP----FFNFQSLTTGNKTSK-------HRKDGTDVGISFSRSKIAPNTWRPKITYEIVD--EGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTVIPL 326
The following BLAST results are available for this feature:
BLAST of NO16G03140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
XP_005853972.11.000e-1436.07hypothetical protein NGA_0434301 [Nannochloropsis ... [more]
EWM22885.12.900e-1436.16hypothetical protein Naga_100160g3 [Nannochloropsi... [more]
EWM22729.13.300e-1031.79hypothetical protein Naga_100561g2 [Nannochloropsi... [more]
EWM22739.19.700e-1032.68hypothetical protein Naga_100209g9 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR082ncniR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G03140.1NO16G03140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611825gene_10787Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G03140.1NO16G03140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G03140 ID=NO16G03140|Name=NO16G03140|organism=Nannochloropsis oceanica|type=gene|length=2154bp
ACTTTCAGTGCGATCGATGGCTTGTTTCTTTTATTTTTTCTTCGTTCACG
TTACCTACCTCTGTCCATTATATTTGAGTGGAAGGCATCCAGGTAATGAC
ATCAAGAGATACGCGGCCCATGTAAACGACCTGATGTTTCTCTGGTCCAT
ATCGACGCGCTCGGGCTCTCCCGTTCTCCCCTTCCGTACTGGAAAATGGG
ACGGGAGCGATCTTTTTTCCCCGTCGTACCACGATGCCCTTTCTCTGGTT
AAGATCCTGCGGCCGTGTTTATGTGCGTCGGGCGCCAAGGAGTGCTTACC
AAGTAGTATGGCGGCGATGATGCGTGGCGTTCGGGGCCCATGTGTCGATA
GCGTCTGTTCGCCCCTCACTGTCAGTCTCCCACGCCCTCCACAGGAGGGC
GCACAGTCTCCGACAACCCGCTCCCAAAGATTGCATTATGCATGCGACAG
CGTATCATACCAACAAGACGCTTGGTGAAGGGGCCGAGGAGAAGACCTCC
TTGACAGTAGCCTGCCCTTGTGCCAGAGGCATAGGCGATGACCGTATCCA
TACAGAGTCTACGACTTTTTGGCCCTGTCCGATCCCCTCTTGCCTTGCAC
ACACGCACTAATTCTCCTTTCACATCCCACGACAACTCATACACACAGCA
CCCACTCTCTCCGATAACAACCATGAAGTTGACCGTATCCTCCGTCCTCC
TCGCCGGCGTCGCCCTCTTGTCCGCCATGgtgcgttctgacacacccatt
tatccatgcacggatgcaagtgtctatcctacaaatcgatgtcgtgttca
cattctgttatgtcacgctcttcctctctttcttgctctatcttcccccc
ccccccctttatgacacagTCCGCTGTTAGCGGCAGCGGCCACGTCCAAA
CCGGCGCCAAGTCCGTGCTCGTGAAAAAGGGTAGAATCGTGACTGTCACC
CAGAGGTTTGTAGCCCAGAGCTTCAACGTTGGTCGTCGTCTTGTTGATGT
TCAGGAGCCTGTCATGGCTGGGgtacgttgcaaaaagagggcagtcgagg
ggtggggggggggaagggcttgccctcgcagaatttgtgccggacctgtt
ggcatacttacagacgtgcgatcagatcgatacattcgctatctcgccgc
ctgaatgaacaaacattaccatttctcattccttcctttgcttcctgctt
tccctcccaccactcgctgtctccatccatctacttctccacagCTCACG
ACTGACCCTGAGGGGGAGTTTGACTTCGGCTTCGGCCCCTTCTCCTCTAC
CAACAAAACCAAACGCAACAAGACGGCCAAAAGCAAGACGGACAAATGGG
CGGACGACGTCGGAATCACCATCAAGTCGGCCAAGATCCTCCCCAATACG
TGGAAGCCTAAgtgagtgaaacaggcggaaggggagggaagagtggggtt
ggagggaggaagcgggagttcgtaaaacgtataatttctcctcggtttgc
cctgctctgattctcaaagcctctttccctctccttctcccctctccctt
gtcttgtctcccacagGGTGTCTGCGAACATGACCTCGACCGTCGATGGT
GACTACGCCATCTTCGAGCTCCCGCAGGACGGCCTGGACCTGAACAGGGA
GTACAAGATCGTCTACAAGGTGCGCGTTGGGAGGGGCATCCCCTCTGGTA
CCTTCATCGAGCTTCCGTATAATTTCGATGGTATCTCCTTTGGAGACGAC
TTTGCTGTGACTGTTATTGTCAAGTAATCAAATGTCTTGGCCTGGCTCCG
CTCCCTTGTGGAAAAATGAGGGTCGAGATGCATGTGTTGCGATCATGATG
AAAAATGGTGGCGTGGCCTTTTTTCGTACATATATGTGTGTAAATCTGTT
GTGATGTACATGCGTACATCTATCCGTGCGCGGCGTGATCCCTGCTTCGC
GTCAGATGTTGTACGTTTCGCTGTGTGTCATGTGTTTGTGTTTGTGTCTG
TCTACGTGTAATTGTGTGTGTTGGCGTGTAGGTGTGGATGTTTCCTCTTT
CAAAGGGAAAGATTATAAGAAAGACAAAAAGCTACAACACCTGAGTGGCA
ATCCATTTTTTTGTTTGGTGGACATAGCCTCAATACGGTGGGGGGTCACG
ATCC
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protein sequence of NO16G03140.1

>NO16G03140.1-protein ID=NO16G03140.1-protein|Name=NO16G03140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MTVSIQSLRLFGPVRSPLALHTRTNSPFTSHDNSYTQHPLSPITTMKLTV
SSVLLAGVALLSAMSAVSGSGHVQTGAKSVLVKKGRIVTVTQRFVAQSFN
VGRRLVDVQEPVMAGLTTDPEGEFDFGFGPFSSTNKTKRNKTAKSKTDKW
ADDVGITIKSAKILPNTWKPKVSANMTSTVDGDYAIFELPQDGLDLNREY
KIVYKVRVGRGIPSGTFIELPYNFDGISFGDDFAVTVIVK*
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Synonyms
Publications