NO16G03140.1, NO16G03140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G03140.1
Unique NameNO16G03140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1637
Alignment locationchr16:932740..934893 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:932740..934893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G03140.1 vs.
Match: EWM22885.1 (hypothetical protein Naga_100160g3 [Nannochloropsis gaditana])

HSP 1 Score: 98.2 bits (243), Expect = 3.700e-17
Identity = 67/177 (37.85%), Postives = 96/177 (54.24%), Query Frame = 0 
Query:   42 PITTMKLTVSSVLLAGVALLSAMSAVSGSGHVQTGAKSVLVKKGRIVTVTQRFVAQSFNVGRRLVDVQEPVMAGLTTDPEGEFDFGFGPFSSTNKTKRNKTAKSKTDKWADDVGITIKSAKILPNTWKPKVSANMTSTVDGDYAIFELPQDGLDLNREYKIVYKVRVGRGIPSGTFI 219
            P   MK+  SS+L+A   LLS  +A   +G V    KS+ VK GR  T+T  F+         L D       G+T +P              + + +N TAK+KT K+A DV +T++  +I PNTW+PK  AN T T     +   LP DGL L+++YKI  K+R+G+GIPSGT++
Sbjct:   17 PFAIMKV-FSSLLVAVATLLSNAAAQEYTGSVCV--KSLSVKAGRQATITTSFLISE------LPDTVTEAFYGITVEP-----------LVNSLSWKNHTAKNKTSKFAGDVDVTLRKTRISPNTWRPKTFANGTGT---GTSFLPLPLDGLVLSKQYKITSKIRIGKGIPSGTYV 170
The following BLAST results are available for this feature:
BLAST of NO16G03140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22885.13.700e-1737.85hypothetical protein Naga_100160g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G03140NO16G03140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G03140.1NO16G03140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G03140.1.cds1NO16G03140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G03140.1.cds2NO16G03140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G03140.1.cds3NO16G03140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G03140.1.cds4NO16G03140.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G03140.1 ID=NO16G03140.1|Name=NO16G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1637bp
ACTTTCAGTGCGATCGATGGCTTGTTTCTTTTATTTTTTCTTCGTTCACG
TTACCTACCTCTGTCCATTATATTTGAGTGGAAGGCATCCAGGTAATGAC
ATCAAGAGATACGCGGCCCATGTAAACGACCTGATGTTTCTCTGGTCCAT
ATCGACGCGCTCGGGCTCTCCCGTTCTCCCCTTCCGTACTGGAAAATGGG
ACGGGAGCGATCTTTTTTCCCCGTCGTACCACGATGCCCTTTCTCTGGTT
AAGATCCTGCGGCCGTGTTTATGTGCGTCGGGCGCCAAGGAGTGCTTACC
AAGTAGTATGGCGGCGATGATGCGTGGCGTTCGGGGCCCATGTGTCGATA
GCGTCTGTTCGCCCCTCACTGTCAGTCTCCCACGCCCTCCACAGGAGGGC
GCACAGTCTCCGACAACCCGCTCCCAAAGATTGCATTATGCATGCGACAG
CGTATCATACCAACAAGACGCTTGGTGAAGGGGCCGAGGAGAAGACCTCC
TTGACAGTAGCCTGCCCTTGTGCCAGAGGCATAGGCGATGACCGTATCCA
TACAGAGTCTACGACTTTTTGGCCCTGTCCGATCCCCTCTTGCCTTGCAC
ACACGCACTAATTCTCCTTTCACATCCCACGACAACTCATACACACAGCA
CCCACTCTCTCCGATAACAACCATGAAGTTGACCGTATCCTCCGTCCTCC
TCGCCGGCGTCGCCCTCTTGTCCGCCATGTCCGCTGTTAGCGGCAGCGGC
CACGTCCAAACCGGCGCCAAGTCCGTGCTCGTGAAAAAGGGTAGAATCGT
GACTGTCACCCAGAGGTTTGTAGCCCAGAGCTTCAACGTTGGTCGTCGTC
TTGTTGATGTTCAGGAGCCTGTCATGGCTGGGCTCACGACTGACCCTGAG
GGGGAGTTTGACTTCGGCTTCGGCCCCTTCTCCTCTACCAACAAAACCAA
ACGCAACAAGACGGCCAAAAGCAAGACGGACAAATGGGCGGACGACGTCG
GAATCACCATCAAGTCGGCCAAGATCCTCCCCAATACGTGGAAGCCTAAG
GTGTCTGCGAACATGACCTCGACCGTCGATGGTGACTACGCCATCTTCGA
GCTCCCGCAGGACGGCCTGGACCTGAACAGGGAGTACAAGATCGTCTACA
AGGTGCGCGTTGGGAGGGGCATCCCCTCTGGTACCTTCATCGAGCTTCCG
TATAATTTCGATGGTATCTCCTTTGGAGACGACTTTGCTGTGACTGTTAT
TGTCAAGTAATCAAATGTCTTGGCCTGGCTCCGCTCCCTTGTGGAAAAAT
GAGGGTCGAGATGCATGTGTTGCGATCATGATGAAAAATGGTGGCGTGGC
CTTTTTTCGTACATATATGTGTGTAAATCTGTTGTGATGTACATGCGTAC
ATCTATCCGTGCGCGGCGTGATCCCTGCTTCGCGTCAGATGTTGTACGTT
TCGCTGTGTGTCATGTGTTTGTGTTTGTGTCTGTCTACGTGTAATTGTGT
GTGTTGGCGTGTAGGTGTGGATGTTTCCTCTTTCAAAGGGAAAGATTATA
AGAAAGACAAAAAGCTACAACACCTGAGTGGCAATCCATTTTTTTGTTTG
GTGGACATAGCCTCAATACGGTGGGGGGTCACGATCC
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protein sequence of NO16G03140.1

>NO16G03140.1-protein ID=NO16G03140.1-protein|Name=NO16G03140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MTVSIQSLRLFGPVRSPLALHTRTNSPFTSHDNSYTQHPLSPITTMKLTV
SSVLLAGVALLSAMSAVSGSGHVQTGAKSVLVKKGRIVTVTQRFVAQSFN
VGRRLVDVQEPVMAGLTTDPEGEFDFGFGPFSSTNKTKRNKTAKSKTDKW
ADDVGITIKSAKILPNTWKPKVSANMTSTVDGDYAIFELPQDGLDLNREY
KIVYKVRVGRGIPSGTFIELPYNFDGISFGDDFAVTVIVK*
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mRNA from alignment at chr16:932740..934893+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G03140.1 ID=NO16G03140.1|Name=NO16G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2154bp|location=Sequence derived from alignment at chr16:932740..934893+ (Nannochloropsis oceanica)
ACTTTCAGTGCGATCGATGGCTTGTTTCTTTTATTTTTTCTTCGTTCACG
TTACCTACCTCTGTCCATTATATTTGAGTGGAAGGCATCCAGGTAATGAC
ATCAAGAGATACGCGGCCCATGTAAACGACCTGATGTTTCTCTGGTCCAT
ATCGACGCGCTCGGGCTCTCCCGTTCTCCCCTTCCGTACTGGAAAATGGG
ACGGGAGCGATCTTTTTTCCCCGTCGTACCACGATGCCCTTTCTCTGGTT
AAGATCCTGCGGCCGTGTTTATGTGCGTCGGGCGCCAAGGAGTGCTTACC
AAGTAGTATGGCGGCGATGATGCGTGGCGTTCGGGGCCCATGTGTCGATA
GCGTCTGTTCGCCCCTCACTGTCAGTCTCCCACGCCCTCCACAGGAGGGC
GCACAGTCTCCGACAACCCGCTCCCAAAGATTGCATTATGCATGCGACAG
CGTATCATACCAACAAGACGCTTGGTGAAGGGGCCGAGGAGAAGACCTCC
TTGACAGTAGCCTGCCCTTGTGCCAGAGGCATAGGCGATGACCGTATCCA
TACAGAGTCTACGACTTTTTGGCCCTGTCCGATCCCCTCTTGCCTTGCAC
ACACGCACTAATTCTCCTTTCACATCCCACGACAACTCATACACACAGCA
CCCACTCTCTCCGATAACAACCATGAAGTTGACCGTATCCTCCGTCCTCC
TCGCCGGCGTCGCCCTCTTGTCCGCCATGGTGCGTTCTGACACACCCATT
TATCCATGCACGGATGCAAGTGTCTATCCTACAAATCGATGTCGTGTTCA
CATTCTGTTATGTCACGCTCTTCCTCTCTTTCTTGCTCTATCTTCCCCCC
CCCCCCCTTTATGACACAGTCCGCTGTTAGCGGCAGCGGCCACGTCCAAA
CCGGCGCCAAGTCCGTGCTCGTGAAAAAGGGTAGAATCGTGACTGTCACC
CAGAGGTTTGTAGCCCAGAGCTTCAACGTTGGTCGTCGTCTTGTTGATGT
TCAGGAGCCTGTCATGGCTGGGGTACGTTGCAAAAAGAGGGCAGTCGAGG
GGTGGGGGGGGGGAAGGGCTTGCCCTCGCAGAATTTGTGCCGGACCTGTT
GGCATACTTACAGACGTGCGATCAGATCGATACATTCGCTATCTCGCCGC
CTGAATGAACAAACATTACCATTTCTCATTCCTTCCTTTGCTTCCTGCTT
TCCCTCCCACCACTCGCTGTCTCCATCCATCTACTTCTCCACAGCTCACG
ACTGACCCTGAGGGGGAGTTTGACTTCGGCTTCGGCCCCTTCTCCTCTAC
CAACAAAACCAAACGCAACAAGACGGCCAAAAGCAAGACGGACAAATGGG
CGGACGACGTCGGAATCACCATCAAGTCGGCCAAGATCCTCCCCAATACG
TGGAAGCCTAAGTGAGTGAAACAGGCGGAAGGGGAGGGAAGAGTGGGGTT
GGAGGGAGGAAGCGGGAGTTCGTAAAACGTATAATTTCTCCTCGGTTTGC
CCTGCTCTGATTCTCAAAGCCTCTTTCCCTCTCCTTCTCCCCTCTCCCTT
GTCTTGTCTCCCACAGGGTGTCTGCGAACATGACCTCGACCGTCGATGGT
GACTACGCCATCTTCGAGCTCCCGCAGGACGGCCTGGACCTGAACAGGGA
GTACAAGATCGTCTACAAGGTGCGCGTTGGGAGGGGCATCCCCTCTGGTA
CCTTCATCGAGCTTCCGTATAATTTCGATGGTATCTCCTTTGGAGACGAC
TTTGCTGTGACTGTTATTGTCAAGTAATCAAATGTCTTGGCCTGGCTCCG
CTCCCTTGTGGAAAAATGAGGGTCGAGATGCATGTGTTGCGATCATGATG
AAAAATGGTGGCGTGGCCTTTTTTCGTACATATATGTGTGTAAATCTGTT
GTGATGTACATGCGTACATCTATCCGTGCGCGGCGTGATCCCTGCTTCGC
GTCAGATGTTGTACGTTTCGCTGTGTGTCATGTGTTTGTGTTTGTGTCTG
TCTACGTGTAATTGTGTGTGTTGGCGTGTAGGTGTGGATGTTTCCTCTTT
CAAAGGGAAAGATTATAAGAAAGACAAAAAGCTACAACACCTGAGTGGCA
ATCCATTTTTTTGTTTGGTGGACATAGCCTCAATACGGTGGGGGGTCACG
ATCC
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Coding sequence (CDS) from alignment at chr16:932740..934893+

>NO16G03140.1 ID=NO16G03140.1|Name=NO16G03140.1|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at chr16:932740..934893+ (Nannochloropsis oceanica)
ATGACCGTATCCATACAGAGTCTACGACTTTTTGGCCCTGTCCGATCCCC
TCTTGCCTTGCACACACGCACTAATTCTCCTTTCACATCCCACGACAACT
CATACACACAGCACCCACTCTCTCCGATAACAACCATGAAGTTGACCGTA
TCCTCCGTCCTCCTCGCCGGCGTCGCCCTCTTGTCCGCCATGTCCGCTGT
TAGCGGCAGCGGCCACGTCCAAACCGGCGCCAAGTCCGTGCTCGTGAAAA
AGGGTAGAATCGTGACTGTCACCCAGAGGTTTGTAGCCCAGAGCTTCAAC
GTTGGTCGTCGTCTTGTTGATGTTCAGGAGCCTGTCATGGCTGGGCTCAC
GACTGACCCTGAGGGGGAGTTTGACTTCGGCTTCGGCCCCTTCTCCTCTA
CCAACAAAACCAAACGCAACAAGACGGCCAAAAGCAAGACGGACAAATGG
GCGGACGACGTCGGAATCACCATCAAGTCGGCCAAGATCCTCCCCAATAC
GTGGAAGCCTAAGGTGTCTGCGAACATGACCTCGACCGTCGATGGTGACT
ACGCCATCTTCGAGCTCCCGCAGGACGGCCTGGACCTGAACAGGGAGTAC
AAGATCGTCTACAAGGTGCGCGTTGGGAGGGGCATCCCCTCTGGTACCTT
CATCGAGCTTCCGTATAATTTCGATGGTATCTCCTTTGGAGACGACTTTG
CTGTGACTGTTATTGTCAAGTAA
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Synonyms
Publications