NO16G03030, NO16G03030 (gene) Nannochloropsis oceanica

Overview
NameNO16G03030
Unique NameNO16G03030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length806
Alignment locationchr16:895522..896327 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:895522..896327 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO16G03030 vs. NCBI_GenBank
Match: EWM23807.1 (hypothetical protein Naga_101274g2 [Nannochloropsis gaditana] >EWM23808.1 hypothetical protein Naga_101274g2 [Nannochloropsis gaditana] >EWM23809.1 hypothetical protein Naga_101274g2 [Nannochloropsis gaditana])

HSP 1 Score: 88.6 bits (218), Expect = 1.600e-14
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 0 
Query:   82 SPLSDNMRQKLLNEARATGADYNSSNGNPILIVAAVIGVLVILGGKGFFF 132
            +PLSDNMRQKLLNEAR  GADYN+SNGNPIL++A VIGVLV+LGGKGFF+
Sbjct:   84 TPLSDNMRQKLLNEARGQGADYNTSNGNPILLIAVVIGVLVVLGGKGFFY 133
The following BLAST results are available for this feature:
BLAST of NO16G03030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23807.11.600e-1482.00hypothetical protein Naga_101274g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR082ncniR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G03030.1NO16G03030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101274g2gene6653Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G03030.1NO16G03030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G03030 ID=NO16G03030|Name=NO16G03030|organism=Nannochloropsis oceanica|type=gene|length=806bp
ACAGACAACCCCAAACCTAACACCAGCCATGGTGCGTCTCCTCGCCCTTG
TCATCCTCTGCCTGCTTTCCACGGTAGTCTTTGCCTTCCTCTTTCCTTCG
TCCACCCTTCCTTATCCTTCCTCGTCCTCGACCATGCACAACAAGAGGAC
ATCCAAGACCTTGACCCCTTCGTCCTCCCTCCCTTCCCTCCTCCTTCGCC
ATGCTGCTGCTGACAGTGATGACGATGATGAGAAGAAGAAGGCCCCTGCT
CCGCGGGACATGCCCCCTCCGTCGCCTCTCAGTGACAACATGAGACAGAA
GTTATTAAATGAGGCACGAGCCACCGGCGCGGACTACAACTCGAGCAACG
GCAACCCAATCCTCATTGTGGCCGCGGTCATTGGTGTACTTGTGATTCTG
GGAGGAAAGGGTTTCTTCTTTTAGGCCTTGAAAAACTCAGAGAGAATTGT
GTGTCTCGGAATAATGGTGCAGTGGTGTGGGACTGAAGAAGACGAAGCAA
GGAAATGTGTCTATGTGTTGACCAGCCTTTGACTTGTTTCTTTGATTTTC
TGGCAATTTAAGACGTTATCATTTGATTTGCTGAGATGATATTTCAATTG
ATTGGTGCTGCAGACGGACGGTACCGACATGTTCAATCGGACCCGCCTCT
CGCTAGTTTGATTGTGGTCTTTATAATTGGAGCTGGGACAGGGAGCCTCG
AGCGCTCTCCTTCTCCTCTTCGCTTGCATCTTTATATCTTCATATTCCCG
TCCCTTGCCCTATCGTATCGTATGCTTCTATGTCTCTCTCTCTGTCTCTC
TCTCTC
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protein sequence of NO16G03030.1

>NO16G03030.1-protein ID=NO16G03030.1-protein|Name=NO16G03030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MVRLLALVILCLLSTVVFAFLFPSSTLPYPSSSSTMHNKRTSKTLTPSSS
LPSLLLRHAAADSDDDDEKKKAPAPRDMPPPSPLSDNMRQKLLNEARATG
ADYNSSNGNPILIVAAVIGVLVILGGKGFFF*
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Synonyms
Publications