NO16G03030.1, NO16G03030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G03030.1
Unique NameNO16G03030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length806
Alignment locationchr16:895522..896327 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:895522..896327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G03030.1 vs.
Match: EWM23807.1 (hypothetical protein Naga_101274g2 [Nannochloropsis gaditana]; EWM23808.1 hypothetical protein Naga_101274g2 [Nannochloropsis gaditana]; EWM23809.1 hypothetical protein Naga_101274g2 [Nannochloropsis gaditana])

HSP 1 Score: 115.9 bits (289), Expect = 9.300e-23
Identity = 73/134 (54.48%), Postives = 93/134 (69.40%), Query Frame = 0 
Query:    1 MVRLLALVILCLLSTVVFAFLFPSSTL-PYPSSSSTMHNKRTSKTLTPSSSLPSLLLRHAAADSDDDDEKKKA--PAPRDMPPPSPLSDNMRQKLLNEARATGADYNSSNGNPILIVAAVIGVLVILGGKGFFF 132
            M R    + LCL  +  F FL P+ +L P PS       +    + +  +S P L+L+ AA DSD++ +KKK   PA R+MPPP+PLSDNMRQKLLNEAR  GADYN+SNGNPIL++A VIGVLV+LGGKGFF+
Sbjct:    1 MPRSFTFIALCLTVSATFGFLLPTPSLVPTPSCGRGRTFRSPFFSSSTFASSP-LVLQAAADDSDENGQKKKITEPARREMPPPTPLSDNMRQKLLNEARGQGADYNTSNGNPILLIAVVIGVLVVLGGKGFFY 133
The following BLAST results are available for this feature:
BLAST of NO16G03030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23807.19.300e-2354.48hypothetical protein Naga_101274g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G03030NO16G03030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G03030.1NO16G03030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G03030.1.cds1NO16G03030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G03030.1 ID=NO16G03030.1|Name=NO16G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=806bp
ACAGACAACCCCAAACCTAACACCAGCCATGGTGCGTCTCCTCGCCCTTG
TCATCCTCTGCCTGCTTTCCACGGTAGTCTTTGCCTTCCTCTTTCCTTCG
TCCACCCTTCCTTATCCTTCCTCGTCCTCGACCATGCACAACAAGAGGAC
ATCCAAGACCTTGACCCCTTCGTCCTCCCTCCCTTCCCTCCTCCTTCGCC
ATGCTGCTGCTGACAGTGATGACGATGATGAGAAGAAGAAGGCCCCTGCT
CCGCGGGACATGCCCCCTCCGTCGCCTCTCAGTGACAACATGAGACAGAA
GTTATTAAATGAGGCACGAGCCACCGGCGCGGACTACAACTCGAGCAACG
GCAACCCAATCCTCATTGTGGCCGCGGTCATTGGTGTACTTGTGATTCTG
GGAGGAAAGGGTTTCTTCTTTTAGGCCTTGAAAAACTCAGAGAGAATTGT
GTGTCTCGGAATAATGGTGCAGTGGTGTGGGACTGAAGAAGACGAAGCAA
GGAAATGTGTCTATGTGTTGACCAGCCTTTGACTTGTTTCTTTGATTTTC
TGGCAATTTAAGACGTTATCATTTGATTTGCTGAGATGATATTTCAATTG
ATTGGTGCTGCAGACGGACGGTACCGACATGTTCAATCGGACCCGCCTCT
CGCTAGTTTGATTGTGGTCTTTATAATTGGAGCTGGGACAGGGAGCCTCG
AGCGCTCTCCTTCTCCTCTTCGCTTGCATCTTTATATCTTCATATTCCCG
TCCCTTGCCCTATCGTATCGTATGCTTCTATGTCTCTCTCTCTGTCTCTC
TCTCTC
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protein sequence of NO16G03030.1

>NO16G03030.1-protein ID=NO16G03030.1-protein|Name=NO16G03030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MVRLLALVILCLLSTVVFAFLFPSSTLPYPSSSSTMHNKRTSKTLTPSSS
LPSLLLRHAAADSDDDDEKKKAPAPRDMPPPSPLSDNMRQKLLNEARATG
ADYNSSNGNPILIVAAVIGVLVILGGKGFFF*
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mRNA from alignment at chr16:895522..896327-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G03030.1 ID=NO16G03030.1|Name=NO16G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=806bp|location=Sequence derived from alignment at chr16:895522..896327- (Nannochloropsis oceanica)
ACAGACAACCCCAAACCTAACACCAGCCATGGTGCGTCTCCTCGCCCTTG
TCATCCTCTGCCTGCTTTCCACGGTAGTCTTTGCCTTCCTCTTTCCTTCG
TCCACCCTTCCTTATCCTTCCTCGTCCTCGACCATGCACAACAAGAGGAC
ATCCAAGACCTTGACCCCTTCGTCCTCCCTCCCTTCCCTCCTCCTTCGCC
ATGCTGCTGCTGACAGTGATGACGATGATGAGAAGAAGAAGGCCCCTGCT
CCGCGGGACATGCCCCCTCCGTCGCCTCTCAGTGACAACATGAGACAGAA
GTTATTAAATGAGGCACGAGCCACCGGCGCGGACTACAACTCGAGCAACG
GCAACCCAATCCTCATTGTGGCCGCGGTCATTGGTGTACTTGTGATTCTG
GGAGGAAAGGGTTTCTTCTTTTAGGCCTTGAAAAACTCAGAGAGAATTGT
GTGTCTCGGAATAATGGTGCAGTGGTGTGGGACTGAAGAAGACGAAGCAA
GGAAATGTGTCTATGTGTTGACCAGCCTTTGACTTGTTTCTTTGATTTTC
TGGCAATTTAAGACGTTATCATTTGATTTGCTGAGATGATATTTCAATTG
ATTGGTGCTGCAGACGGACGGTACCGACATGTTCAATCGGACCCGCCTCT
CGCTAGTTTGATTGTGGTCTTTATAATTGGAGCTGGGACAGGGAGCCTCG
AGCGCTCTCCTTCTCCTCTTCGCTTGCATCTTTATATCTTCATATTCCCG
TCCCTTGCCCTATCGTATCGTATGCTTCTATGTCTCTCTCTCTGTCTCTC
TCTCTC
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Coding sequence (CDS) from alignment at chr16:895522..896327-

>NO16G03030.1 ID=NO16G03030.1|Name=NO16G03030.1|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at chr16:895522..896327- (Nannochloropsis oceanica)
ATGGTGCGTCTCCTCGCCCTTGTCATCCTCTGCCTGCTTTCCACGGTAGT
CTTTGCCTTCCTCTTTCCTTCGTCCACCCTTCCTTATCCTTCCTCGTCCT
CGACCATGCACAACAAGAGGACATCCAAGACCTTGACCCCTTCGTCCTCC
CTCCCTTCCCTCCTCCTTCGCCATGCTGCTGCTGACAGTGATGACGATGA
TGAGAAGAAGAAGGCCCCTGCTCCGCGGGACATGCCCCCTCCGTCGCCTC
TCAGTGACAACATGAGACAGAAGTTATTAAATGAGGCACGAGCCACCGGC
GCGGACTACAACTCGAGCAACGGCAACCCAATCCTCATTGTGGCCGCGGT
CATTGGTGTACTTGTGATTCTGGGAGGAAAGGGTTTCTTCTTTTAG
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Synonyms
Publications