NO16G03000, NO16G03000 (gene) Nannochloropsis oceanica

Overview
NameNO16G03000
Unique NameNO16G03000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2096
Alignment locationchr16:878292..880387 -

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Properties
Property NameValue
DescriptionSymplekin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:878292..880387 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021850Symplekin/Pta1
IPR022075Symplekin_C
Homology
BLAST of NO16G03000 vs. NCBI_GenBank
Match: XP_024365310.1 (symplekin-like isoform X1 [Physcomitrella patens] >PNR59712.1 hypothetical protein PHYPA_002504 [Physcomitrella patens])

HSP 1 Score: 80.9 bits (198), Expect = 6.700e-12
Identity = 55/156 (35.26%), Postives = 91/156 (58.33%), Query Frame = 0
Query:  115 KTLKEIRGGDVSYLLPVIGGLSKEDFEAALPPL--LAQDLVDAKLLKRLIIPA--GP-LTAAEVLVSLHNVDPEAAAASVDLSLRKYLDTLQQCLNMKTLFPQTAMTLALVKMVEDKDRPVPYAYMRSVILAIRAYPTLKSIVADNIVPKLVEREV 266
            K L +++  D +YL+PV+  LSK++     P L  L+ +   A L + L   A  GP LT AEVL+SLH +DP   +    + L+K +D    CL  +T+F Q  +   L ++VE    P+P  +MR+VI A+ ++P+L+S V + I+ +LV +++
Sbjct: 1051 KKLYDVKFQDATYLIPVLSSLSKDEVTPIFPRLVDLSNEKFQAALARILQGSAHTGPALTPAEVLISLHGIDPHRDS----VPLKKVMDACATCLQQRTVFTQQVLAKVLNQLVE--QTPLPLLFMRTVIQAVHSFPSLESFVME-ILSRLVSKQI 1199          
BLAST of NO16G03000 vs. NCBI_GenBank
Match: XP_024365323.1 (symplekin-like isoform X3 [Physcomitrella patens])

HSP 1 Score: 80.9 bits (198), Expect = 6.700e-12
Identity = 55/156 (35.26%), Postives = 91/156 (58.33%), Query Frame = 0
Query:  115 KTLKEIRGGDVSYLLPVIGGLSKEDFEAALPPL--LAQDLVDAKLLKRLIIPA--GP-LTAAEVLVSLHNVDPEAAAASVDLSLRKYLDTLQQCLNMKTLFPQTAMTLALVKMVEDKDRPVPYAYMRSVILAIRAYPTLKSIVADNIVPKLVEREV 266
            K L +++  D +YL+PV+  LSK++     P L  L+ +   A L + L   A  GP LT AEVL+SLH +DP   +    + L+K +D    CL  +T+F Q  +   L ++VE    P+P  +MR+VI A+ ++P+L+S V + I+ +LV +++
Sbjct:  954 KKLYDVKFQDATYLIPVLSSLSKDEVTPIFPRLVDLSNEKFQAALARILQGSAHTGPALTPAEVLISLHGIDPHRDS----VPLKKVMDACATCLQQRTVFTQQVLAKVLNQLVE--QTPLPLLFMRTVIQAVHSFPSLESFVME-ILSRLVSKQI 1102          
BLAST of NO16G03000 vs. NCBI_GenBank
Match: XP_003062021.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH53733.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 78.2 bits (191), Expect = 4.400e-11
Identity = 56/155 (36.13%), Postives = 84/155 (54.19%), Query Frame = 0
Query:  115 KTLKEIRGGDVSYLLPVIGGLSKEDFEAALPPLLAQDLVDA--KLLKRL--IIPAGPLTAAEVLVSLHNVDPEAAAASVDLSLRKYLDTLQQCLNMKTLFPQTAMTLALVKMVEDKDRPVPYAYMRSVILAIRAYPTLKSIVADNIVPKLVEREV 266
            + L E  GGD+ Y++P+   L K+    +L P +    VDA  ++L RL    PA PLTA E+L++LH+VDP        + L+K +D   +C N   +F    +  AL KMVE    P+P  +MRSVI A +A P+L+      ++  L  R+V
Sbjct: 1036 EALSEACGGDIKYVMPLTSSLKKDVVAKSLLPRVVGVDVDAFREVLDRLTATTPAKPLTATEILIALHDVDP----VRHGVPLKKIIDACGECFNRPDVFTPEVVAAALQKMVE--ATPLPLLFMRSVIQAEQAAPSLREFTL-GLLRTLTRRQV 1183          
BLAST of NO16G03000 vs. NCBI_GenBank
Match: XP_011074295.1 (symplekin isoform X1 [Sesamum indicum])

HSP 1 Score: 78.2 bits (191), Expect = 4.400e-11
Identity = 57/156 (36.54%), Postives = 82/156 (52.56%), Query Frame = 0
Query:  115 KTLKEIRGGDVSYLLPVIGGLSKEDFEAALP-----PLLAQDLVDAKLLKRLIIPAGPLTAAEVLVSLHNVDPEAAAASVDLSLRKYLDTLQQCLNMKTLFPQTAMTLALVKMVEDKDRPVPYAYMRSVILAIRAYPTLKSIVADNIVPKLVEREV 266
            K L E R  D + L+P+I   SK++     P     PL    +  A +L+        LT AEVLV++H++ PE       L L+K  D    C   +T+F Q  +T AL +MV+    P+P  YMR+VI AI A+PTL   V + I+ KLV R++
Sbjct: 1092 KGLYETRLKDATILIPIISAFSKDEVLPIFPRLVQLPLNKFQMALAHILQGSAHTGPALTPAEVLVAIHDISPEKDG----LPLKKITDACSACFEQRTVFTQQVLTKALNQMVD--RTPLPLLYMRTVIQAIDAFPTLVDFVME-ILSKLVNRQI 1240          
BLAST of NO16G03000 vs. NCBI_GenBank
Match: XP_020548104.1 (symplekin isoform X2 [Sesamum indicum])

HSP 1 Score: 78.2 bits (191), Expect = 4.400e-11
Identity = 57/156 (36.54%), Postives = 82/156 (52.56%), Query Frame = 0
Query:  115 KTLKEIRGGDVSYLLPVIGGLSKEDFEAALP-----PLLAQDLVDAKLLKRLIIPAGPLTAAEVLVSLHNVDPEAAAASVDLSLRKYLDTLQQCLNMKTLFPQTAMTLALVKMVEDKDRPVPYAYMRSVILAIRAYPTLKSIVADNIVPKLVEREV 266
            K L E R  D + L+P+I   SK++     P     PL    +  A +L+        LT AEVLV++H++ PE       L L+K  D    C   +T+F Q  +T AL +MV+    P+P  YMR+VI AI A+PTL   V + I+ KLV R++
Sbjct:  953 KGLYETRLKDATILIPIISAFSKDEVLPIFPRLVQLPLNKFQMALAHILQGSAHTGPALTPAEVLVAIHDISPEKDG----LPLKKITDACSACFEQRTVFTQQVLTKALNQMVD--RTPLPLLYMRTVIQAIDAFPTLVDFVME-ILSKLVNRQI 1101          
BLAST of NO16G03000 vs. NCBI_GenBank
Match: XP_009109796.1 (PREDICTED: uncharacterized protein LOC103835387 isoform X1 [Brassica rapa])

HSP 1 Score: 77.8 bits (190), Expect = 5.700e-11
Identity = 57/156 (36.54%), Postives = 84/156 (53.85%), Query Frame = 0
Query:  115 KTLKEIRGGDVSYLLPVIGGLSKEDFEAALPPLL-----AQDLVDAKLLKRLIIPAGPLTAAEVLVSLHNVDPEAAAASVDLSLRKYLDTLQQCLNMKTLFPQTAMTLALVKMVEDKDRPVPYAYMRSVILAIRAYPTLKSIVADNIVPKLVEREV 266
            K L E +  DVS L+P++  LSK++     PPLL        L  A +L+        LT AEVL+++H+V PE         L+K  D    C   +T+F Q  +  AL +MV+    P+P  +MR+VI AI A+PTL  +V + I+ KLV R++
Sbjct: 1078 KHLYETKLKDVSILIPLLSSLSKDEVLPIFPPLLNLPPEKFQLALAHILQGSAHTGPALTPAEVLIAIHDVVPEKNGP----PLKKITDACSACFEQRTVFTQQVLAKALGQMVD--RTPLPLLFMRTVIQAIDAFPTLVDVVME-ILSKLVSRQI 1226          
BLAST of NO16G03000 vs. NCBI_GenBank
Match: CDY11788.1 (BnaC03g57900D [Brassica napus])

HSP 1 Score: 77.4 bits (189), Expect = 7.500e-11
Identity = 56/156 (35.90%), Postives = 84/156 (53.85%), Query Frame = 0
Query:  115 KTLKEIRGGDVSYLLPVIGGLSKEDFEAALPPLL-----AQDLVDAKLLKRLIIPAGPLTAAEVLVSLHNVDPEAAAASVDLSLRKYLDTLQQCLNMKTLFPQTAMTLALVKMVEDKDRPVPYAYMRSVILAIRAYPTLKSIVADNIVPKLVEREV 266
            K L E +  DVS L+P++  L+K++     PPLL        L  A +L+        LT AEVL+++H+V PE         L+K  D    C   +T+F Q  +  AL +MV+    P+P  +MR+VI AI A+PTL  +V + I+ KLV R++
Sbjct: 1113 KHLYETKLKDVSILIPLLSSLTKDEVLPIFPPLLNLSPEKFQLALAHILQGSAHTGPALTPAEVLIAIHDVVPEKGGP----PLKKITDACSACFEQRTVFTQQVLAKALGQMVD--RTPLPLLFMRTVIQAIDAFPTLVDVVME-ILSKLVNRQI 1261          
BLAST of NO16G03000 vs. NCBI_GenBank
Match: XP_024026606.1 (uncharacterized protein LOC21408219 isoform X2 [Morus notabilis])

HSP 1 Score: 76.3 bits (186), Expect = 1.700e-10
Identity = 56/156 (35.90%), Postives = 86/156 (55.13%), Query Frame = 0
Query:  115 KTLKEIRGGDVSYLLPVIGGLSKEDFEAALPPLLAQDLVDAKLLKRLIIP----AGP-LTAAEVLVSLHNVDPEAAAASVDLSLRKYLDTLQQCLNMKTLFPQTAMTLALVKMVEDKDRPVPYAYMRSVILAIRAYPTLKSIVADNIVPKLVEREV 266
            K L E +  DVS L+P++  LSK +     P L+A  L   ++    I+      GP LT AEVLV++H + PE       L+L+K +D    C   +T+F Q  +  AL +MV+    P+P  +MR+VI +I A+P+L   V + I+ KLV ++V
Sbjct: 1074 KHLYETKLKDVSILIPMLPSLSKNEVLPIFPRLVALPLEKFQMALAHILQGSAHTGPALTPAEVLVAIHGIVPEKDG----LALKKIMDACSACFEQRTVFTQQVLAKALTRMVD--QTPLPLLFMRTVIQSIDAFPSLVDFVME-ILSKLVSKQV 1222          
BLAST of NO16G03000 vs. NCBI_GenBank
Match: XP_013663226.1 (uncharacterized protein LOC106367907 isoform X1 [Brassica napus])

HSP 1 Score: 75.9 bits (185), Expect = 2.200e-10
Identity = 56/156 (35.90%), Postives = 83/156 (53.21%), Query Frame = 0
Query:  115 KTLKEIRGGDVSYLLPVIGGLSKEDFEAALPPLL-----AQDLVDAKLLKRLIIPAGPLTAAEVLVSLHNVDPEAAAASVDLSLRKYLDTLQQCLNMKTLFPQTAMTLALVKMVEDKDRPVPYAYMRSVILAIRAYPTLKSIVADNIVPKLVEREV 266
            K L E +  DVS L+P++  L+K++     PPLL        L  A +L+        LT AEVL+++H+V PE         L+K  D    C   +T+F Q  +  AL +MV     P+P  +MR+VI AI A+PTL  +V + I+ KLV R++
Sbjct: 1066 KHLYETKLKDVSILIPLLSSLTKDEVLPIFPPLLNLPPEKFQLALAHILQGSAHTGPALTPAEVLIAIHDVVPEKNGP----PLKKITDACSACFEQRTVFTQQVLAKALGQMV--NRTPLPLLFMRTVIQAIDAFPTLVDVVME-ILSKLVSRQI 1214          
BLAST of NO16G03000 vs. NCBI_GenBank
Match: XP_013663227.1 (uncharacterized protein LOC106367907 isoform X2 [Brassica napus])

HSP 1 Score: 75.9 bits (185), Expect = 2.200e-10
Identity = 56/156 (35.90%), Postives = 83/156 (53.21%), Query Frame = 0
Query:  115 KTLKEIRGGDVSYLLPVIGGLSKEDFEAALPPLL-----AQDLVDAKLLKRLIIPAGPLTAAEVLVSLHNVDPEAAAASVDLSLRKYLDTLQQCLNMKTLFPQTAMTLALVKMVEDKDRPVPYAYMRSVILAIRAYPTLKSIVADNIVPKLVEREV 266
            K L E +  DVS L+P++  L+K++     PPLL        L  A +L+        LT AEVL+++H+V PE         L+K  D    C   +T+F Q  +  AL +MV     P+P  +MR+VI AI A+PTL  +V + I+ KLV R++
Sbjct: 1066 KHLYETKLKDVSILIPLLSSLTKDEVLPIFPPLLNLPPEKFQLALAHILQGSAHTGPALTPAEVLIAIHDVVPEKNGP----PLKKITDACSACFEQRTVFTQQVLAKALGQMV--NRTPLPLLFMRTVIQAIDAFPTLVDVVME-ILSKLVSRQI 1214          
The following BLAST results are available for this feature:
BLAST of NO16G03000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_024365310.16.700e-1235.26symplekin-like isoform X1 [Physcomitrella patens] ... [more]
XP_024365323.16.700e-1235.26symplekin-like isoform X3 [Physcomitrella patens][more]
XP_003062021.14.400e-1136.13predicted protein [Micromonas pusilla CCMP1545] >E... [more]
XP_011074295.14.400e-1136.54symplekin isoform X1 [Sesamum indicum][more]
XP_020548104.14.400e-1136.54symplekin isoform X2 [Sesamum indicum][more]
XP_009109796.15.700e-1136.54PREDICTED: uncharacterized protein LOC103835387 is... [more]
CDY11788.17.500e-1135.90BnaC03g57900D [Brassica napus][more]
XP_024026606.11.700e-1035.90uncharacterized protein LOC21408219 isoform X2 [Mo... [more]
XP_013663226.12.200e-1035.90uncharacterized protein LOC106367907 isoform X1 [B... [more]
XP_013663227.12.200e-1035.90uncharacterized protein LOC106367907 isoform X2 [B... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR082ncniR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594108gene_6200Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|643388gene_10801Nannochloropsis oceanica (N. oceanica CCMP1779)gene
SYMPKgene6652Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G03000.2NO16G03000.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO16G03000.1NO16G03000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G03000.2NO16G03000.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO16G03000.1NO16G03000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G03000 ID=NO16G03000|Name=NO16G03000|organism=Nannochloropsis oceanica|type=gene|length=2096bp
ATGGTGGGAGAGCTCTTCGATGTTTATGGCCGGGCGAAAGAGGGGGAGGG
AGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGGGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGTGTG
TTGGCCAGGGTCGTTGAGGATGAGATGGAGGAATTCGTCAAGCACGTGAT
TGCGgtgggtaggagggagggagggagggagagggagggagggagggaag
gagggagggggagggataaaaagcttcttgtaccgtttcttctcctgatt
agacttgctcacgtctcggccagtcatttgcttcctcccaccttcccatc
ctattcccttcccctcccttcttccctccctttccagCCTCATGGAGCAG
GGGCCTCGCTCTCCGCTCTGGTGGGGGCTCCACCAGCTGCTTCCCCGCTC
ATCCTCCTCGTCCTCTCTATCCTTGTGCCGGAAACTCGCACCCGCCCGCC
CCCTCCCGAGGTGGTGGTTGCCGCCAAGACCTTGAAGGAGATACGgtagg
aagggagggaagtagggagggaggacgggagggaaggaggagagagaaac
acagacgacgattttgcaacgttcgttttaaaatatcacggtttcactca
ccgtccttccttccttccctgcccccctccctacctcttacccccagCGG
CGGCGATGTTTCCTATCTCCTCCCTGTCATCGGCGGCCTATCCAAAGAGG
ATTTCGAGGCCGCCCTCCCCCCCCTCCTCGCCCAGGACCTAGTGGATGCC
AAGTTGCTAAAGAGATTGATAAgtgagtgtagggaggggaagggagggga
taagggacaatgggagagagaaaaaagagaggggcacaaatgcgacgatg
gaagaaagaacgtactgattacactgccccctccctttttcttctcttcc
ctccctctttccctccctccttccctccctccttccctccctcactccct
ccctccttccctccctcactccctccctcactccctctctagTCCCCGCG
GGCCCCCTGACAGCTGCTGAGGTCCTTGTCTCGCTCCACAACGTCGACCC
AGAGGCAGCGGCAGCCTCCGTGGACTTATCTCTCAGAAAGTACTTGGATA
CACTTCAACAATGCCTCAACATGAAGACGCTCTTCCCGCAGACGGCCATG
Agtgagtgaagtgaaagggagggagagagggaggtggggagtcgctactc
agaaatgactcaggactgttgtctctccgctccaacctgtcatcgatctt
attttccacgaatcatgcgcctttcctaccccttctcctaccccttcatc
ctccagCCCTCGCCCTGGTCAAGATGGTGGAGGACAAGGACCGTCCTGTC
CCTTACGCCTATATGCGCAGCGTCATCCTAGCCATCCGCGCCTACCCTAC
CCTCAAGTCCATCGTCGCAGACAACATCGTACCGAAGCTCGTGGAGCGTG
AGGTGGGTATTTAATGTGATCTTCACTCGCTCCTTCCTCTCCTTTCCTTC
CCCTCTCTCTCCCCCTTTGGCCAGTTCGCGCCCTTTTTCCCCTTGTGGCG
ATCATCGCCAACACCATCACCCAGGAGCTCGTACAGTGAGAGACGAATGT
ATGGGTGCTACCATACTCTCTCTCCTTTTCGCTCTCATCTCCTCCTTTCT
CTTTCACATTATCATCCCTTTGACACCACTCCATCTAAATTCTCGCCGTC
TTCCCTCTCGTTAGATCTGGACCTCGCAGCCTCGGGTCTGGGAGGGACTC
ATCATTCTGCCCAAGTACATTGGCACGCGGGAAGTCACCGATAAGATGAG
TGGTGCTCTCCTTGCAGTCCCTGCCTCCCTCCTTCAAGACCTCTTAAAGA
AGAATCCAGATTTTCGGGCGACGTTGGCAGCGCACGTCTCAAGGGGACGG
AAGACGGCAGGGCTGGACAATGCGAAGCGGAAGGTGTTGGGATTATGAGC
GAGCACAGATAGGAGGAAATAAATAAAGAGAGGGAGTTGCGAAGGCGACA
ACATAAAAGCACAAGTAAAAAGAAAAATATTGAGCTCAACACAACA
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protein sequence of NO16G03000.2

>NO16G03000.2-protein ID=NO16G03000.2-protein|Name=NO16G03000.2|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MVGELFDVYGRAKEGEGGKEGGREGGREEGGEGGREGGREGGREGGRESV
LARVVEDEMEEFVKHVIAPHGAGASLSALVGAPPAASPLILLVLSILVPE
TRTRPPPPEVVVAAKTLKEIRGGDVSYLLPVIGGLSKEDFEAALPPLLAQ
DLVDAKLLKRLIIPAGPLTAAEVLVSLHNVDPEAAAASVDLSLRKYLDTL
QQCLNMKTLFPQTAMTLALVKMVEDKDRPVPYAYMRSVILAIRAYPTLKS
IVADNIVPKLVEREVGI*
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protein sequence of NO16G03000.1

>NO16G03000.1-protein ID=NO16G03000.1-protein|Name=NO16G03000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MVGELFDVYGRAKEGEGGKEGGREGGREEGGEGGREGGREGGREGGRESV
LARVVEDEMEEFVKHVIAPHGAGASLSALVGAPPAASPLILLVLSILVPE
TRTRPPPPEVVVAAKTLKEIRGGDVSYLLPVIGGLSKEDFEAALPPLLAQ
DLVDAKLLKRLIIPAGPLTAAEVLVSLHNVDPEAAAASVDLSLRKYLDTL
QQCLNMKTLFPQTAMTLALVKMVEDKDRPVPYAYMRSVILAIRAYPTLKS
IVADNIVPKLVEREIWTSQPRVWEGLIILPKYIGTREVTDKMSGALLAVP
ASLLQDLLKKNPDFRATLAAHVSRGRKTAGLDNAKRKVLGL*
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Synonyms
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