NO16G03000.2, NO16G03000.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G03000.2
Unique NameNO16G03000.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1386
Alignment locationchr16:878292..880387 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:878292..880387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G03000.2 vs.
Match: XP_024365323.1 (symplekin-like isoform X3 [Physcomitrella patens])

HSP 1 Score: 89.4 bits (220), Expect = 1.900e-14
Identity = 70/220 (31.82%), Postives = 119/220 (54.09%), Query Frame = 0 
Query:   52 ARVVEDEMEEFVKHVIAPHGAGAS-LSALVGAPPAASPLILLVLSILVPETRTRPPPPEVVVAAKTLKEIRGGDVSYLLPVIGGLSKEDFEAALPPL--LAQDLVDAKLLKRLIIPA--GP-LTAAEVLVSLHNVDPEAAAASVDLSLRKYLDTLQQCLNMKTLFPQTAMTLALVKMVEDKDRPVPYAYMRSVILAIRAYPTLKSIVADNIVPKLVEREV 266
            ++VV+  +   +  +    G+ +  L  L+  PPA S  +LL   +L   T    P  E++   K L +++  D +YL+PV+  LSK++     P L  L+ +   A L + L   A  GP LT AEVL+SLH +DP   +    + L+K +D    CL  +T+F Q  +   L ++VE    P+P  +MR+VI A+ ++P+L+S V + I+ +LV +++
Sbjct:  892 SKVVKQAVHRHIPILFRTIGSSSQELLQLIADPPAGSENLLL--QVLHSLTDGTEPSEELIATVKKLYDVKFQDATYLIPVLSSLSKDEVTPIFPRLVDLSNEKFQAALARILQGSAHTGPALTPAEVLISLHGIDPHRDS----VPLKKVMDACATCLQQRTVFTQQVLAKVLNQLVE--QTPLPLLFMRTVIQAVHSFPSLESFVME-ILSRLVSKQI 1102
The following BLAST results are available for this feature:
BLAST of NO16G03000.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_024365323.11.900e-1431.82symplekin-like isoform X3 [Physcomitrella patens][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G03000NO16G03000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G03000.2NO16G03000.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G03000.2.cds1NO16G03000.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G03000.2.cds2NO16G03000.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G03000.2.cds3NO16G03000.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G03000.2.cds4NO16G03000.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G03000.2.cds5NO16G03000.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G03000.2 ID=NO16G03000.2|Name=NO16G03000.2|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp
ATGGTGGGAGAGCTCTTCGATGTTTATGGCCGGGCGAAAGAGGGGGAGGG
AGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGGGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGTGTG
TTGGCCAGGGTCGTTGAGGATGAGATGGAGGAATTCGTCAAGCACGTGAT
TGCGCCTCATGGAGCAGGGGCCTCGCTCTCCGCTCTGGTGGGGGCTCCAC
CAGCTGCTTCCCCGCTCATCCTCCTCGTCCTCTCTATCCTTGTGCCGGAA
ACTCGCACCCGCCCGCCCCCTCCCGAGGTGGTGGTTGCCGCCAAGACCTT
GAAGGAGATACGCGGCGGCGATGTTTCCTATCTCCTCCCTGTCATCGGCG
GCCTATCCAAAGAGGATTTCGAGGCCGCCCTCCCCCCCCTCCTCGCCCAG
GACCTAGTGGATGCCAAGTTGCTAAAGAGATTGATAATCCCCGCGGGCCC
CCTGACAGCTGCTGAGGTCCTTGTCTCGCTCCACAACGTCGACCCAGAGG
CAGCGGCAGCCTCCGTGGACTTATCTCTCAGAAAGTACTTGGATACACTT
CAACAATGCCTCAACATGAAGACGCTCTTCCCGCAGACGGCCATGACCCT
CGCCCTGGTCAAGATGGTGGAGGACAAGGACCGTCCTGTCCCTTACGCCT
ATATGCGCAGCGTCATCCTAGCCATCCGCGCCTACCCTACCCTCAAGTCC
ATCGTCGCAGACAACATCGTACCGAAGCTCGTGGAGCGTGAGGTGGGTAT
TTAATGTGATCTTCACTCGCTCCTTCCTCTCCTTTCCTTCCCCTCTCTCT
CCCCCTTTGGCCAGTTCGCGCCCTTTTTCCCCTTGTGGCGATCATCGCCA
ACACCATCACCCAGGAGCTCGTACAGTGAGAGACGAATGTATGGGTGCTA
CCATACTCTCTCTCCTTTTCGCTCTCATCTCCTCCTTTCTCTTTCACATT
ATCATCCCTTTGACACCACTCCATCTAAATTCTCGCCGTCTTCCCTCTCG
TTAGATCTGGACCTCGCAGCCTCGGGTCTGGGAGGGACTCATCATTCTGC
CCAAGTACATTGGCACGCGGGAAGTCACCGATAAGATGAGTGGTGCTCTC
CTTGCAGTCCCTGCCTCCCTCCTTCAAGACCTCTTAAAGAAGAATCCAGA
TTTTCGGGCGACGTTGGCAGCGCACGTCTCAAGGGGACGGAAGACGGCAG
GGCTGGACAATGCGAAGCGGAAGGTGTTGGGATTATGAGCGAGCACAGAT
AGGAGGAAATAAATAAAGAGAGGGAGTTGCGAAGGCGACAACATAAAAGC
ACAAGTAAAAAGAAAAATATTGAGCTCAACACAACA
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protein sequence of NO16G03000.2

>NO16G03000.2-protein ID=NO16G03000.2-protein|Name=NO16G03000.2|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MVGELFDVYGRAKEGEGGKEGGREGGREEGGEGGREGGREGGREGGRESV
LARVVEDEMEEFVKHVIAPHGAGASLSALVGAPPAASPLILLVLSILVPE
TRTRPPPPEVVVAAKTLKEIRGGDVSYLLPVIGGLSKEDFEAALPPLLAQ
DLVDAKLLKRLIIPAGPLTAAEVLVSLHNVDPEAAAASVDLSLRKYLDTL
QQCLNMKTLFPQTAMTLALVKMVEDKDRPVPYAYMRSVILAIRAYPTLKS
IVADNIVPKLVEREVGI*
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mRNA from alignment at chr16:878292..880387-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G03000.2 ID=NO16G03000.2|Name=NO16G03000.2|organism=Nannochloropsis oceanica|type=mRNA|length=2096bp|location=Sequence derived from alignment at chr16:878292..880387- (Nannochloropsis oceanica)
ATGGTGGGAGAGCTCTTCGATGTTTATGGCCGGGCGAAAGAGGGGGAGGG
AGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGGGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGTGTG
TTGGCCAGGGTCGTTGAGGATGAGATGGAGGAATTCGTCAAGCACGTGAT
TGCGGTGGGTAGGAGGGAGGGAGGGAGGGAGAGGGAGGGAGGGAGGGAAG
GAGGGAGGGGGAGGGATAAAAAGCTTCTTGTACCGTTTCTTCTCCTGATT
AGACTTGCTCACGTCTCGGCCAGTCATTTGCTTCCTCCCACCTTCCCATC
CTATTCCCTTCCCCTCCCTTCTTCCCTCCCTTTCCAGCCTCATGGAGCAG
GGGCCTCGCTCTCCGCTCTGGTGGGGGCTCCACCAGCTGCTTCCCCGCTC
ATCCTCCTCGTCCTCTCTATCCTTGTGCCGGAAACTCGCACCCGCCCGCC
CCCTCCCGAGGTGGTGGTTGCCGCCAAGACCTTGAAGGAGATACGGTAGG
AAGGGAGGGAAGTAGGGAGGGAGGACGGGAGGGAAGGAGGAGAGAGAAAC
ACAGACGACGATTTTGCAACGTTCGTTTTAAAATATCACGGTTTCACTCA
CCGTCCTTCCTTCCTTCCCTGCCCCCCTCCCTACCTCTTACCCCCAGCGG
CGGCGATGTTTCCTATCTCCTCCCTGTCATCGGCGGCCTATCCAAAGAGG
ATTTCGAGGCCGCCCTCCCCCCCCTCCTCGCCCAGGACCTAGTGGATGCC
AAGTTGCTAAAGAGATTGATAAGTGAGTGTAGGGAGGGGAAGGGAGGGGA
TAAGGGACAATGGGAGAGAGAAAAAAGAGAGGGGCACAAATGCGACGATG
GAAGAAAGAACGTACTGATTACACTGCCCCCTCCCTTTTTCTTCTCTTCC
CTCCCTCTTTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCACTCCCT
CCCTCCTTCCCTCCCTCACTCCCTCCCTCACTCCCTCTCTAGTCCCCGCG
GGCCCCCTGACAGCTGCTGAGGTCCTTGTCTCGCTCCACAACGTCGACCC
AGAGGCAGCGGCAGCCTCCGTGGACTTATCTCTCAGAAAGTACTTGGATA
CACTTCAACAATGCCTCAACATGAAGACGCTCTTCCCGCAGACGGCCATG
AGTGAGTGAAGTGAAAGGGAGGGAGAGAGGGAGGTGGGGAGTCGCTACTC
AGAAATGACTCAGGACTGTTGTCTCTCCGCTCCAACCTGTCATCGATCTT
ATTTTCCACGAATCATGCGCCTTTCCTACCCCTTCTCCTACCCCTTCATC
CTCCAGCCCTCGCCCTGGTCAAGATGGTGGAGGACAAGGACCGTCCTGTC
CCTTACGCCTATATGCGCAGCGTCATCCTAGCCATCCGCGCCTACCCTAC
CCTCAAGTCCATCGTCGCAGACAACATCGTACCGAAGCTCGTGGAGCGTG
AGGTGGGTATTTAATGTGATCTTCACTCGCTCCTTCCTCTCCTTTCCTTC
CCCTCTCTCTCCCCCTTTGGCCAGTTCGCGCCCTTTTTCCCCTTGTGGCG
ATCATCGCCAACACCATCACCCAGGAGCTCGTACAGTGAGAGACGAATGT
ATGGGTGCTACCATACTCTCTCTCCTTTTCGCTCTCATCTCCTCCTTTCT
CTTTCACATTATCATCCCTTTGACACCACTCCATCTAAATTCTCGCCGTC
TTCCCTCTCGTTAGATCTGGACCTCGCAGCCTCGGGTCTGGGAGGGACTC
ATCATTCTGCCCAAGTACATTGGCACGCGGGAAGTCACCGATAAGATGAG
TGGTGCTCTCCTTGCAGTCCCTGCCTCCCTCCTTCAAGACCTCTTAAAGA
AGAATCCAGATTTTCGGGCGACGTTGGCAGCGCACGTCTCAAGGGGACGG
AAGACGGCAGGGCTGGACAATGCGAAGCGGAAGGTGTTGGGATTATGAGC
GAGCACAGATAGGAGGAAATAAATAAAGAGAGGGAGTTGCGAAGGCGACA
ACATAAAAGCACAAGTAAAAAGAAAAATATTGAGCTCAACACAACA
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Coding sequence (CDS) from alignment at chr16:878292..880387-

>NO16G03000.2 ID=NO16G03000.2|Name=NO16G03000.2|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at chr16:878292..880387- (Nannochloropsis oceanica)
ATGGTGGGAGAGCTCTTCGATGTTTATGGCCGGGCGAAAGAGGGGGAGGG
AGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGGGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGTGTG
TTGGCCAGGGTCGTTGAGGATGAGATGGAGGAATTCGTCAAGCACGTGAT
TGCGCCTCATGGAGCAGGGGCCTCGCTCTCCGCTCTGGTGGGGGCTCCAC
CAGCTGCTTCCCCGCTCATCCTCCTCGTCCTCTCTATCCTTGTGCCGGAA
ACTCGCACCCGCCCGCCCCCTCCCGAGGTGGTGGTTGCCGCCAAGACCTT
GAAGGAGATACGCGGCGGCGATGTTTCCTATCTCCTCCCTGTCATCGGCG
GCCTATCCAAAGAGGATTTCGAGGCCGCCCTCCCCCCCCTCCTCGCCCAG
GACCTAGTGGATGCCAAGTTGCTAAAGAGATTGATAATCCCCGCGGGCCC
CCTGACAGCTGCTGAGGTCCTTGTCTCGCTCCACAACGTCGACCCAGAGG
CAGCGGCAGCCTCCGTGGACTTATCTCTCAGAAAGTACTTGGATACACTT
CAACAATGCCTCAACATGAAGACGCTCTTCCCGCAGACGGCCATGACCCT
CGCCCTGGTCAAGATGGTGGAGGACAAGGACCGTCCTGTCCCTTACGCCT
ATATGCGCAGCGTCATCCTAGCCATCCGCGCCTACCCTACCCTCAAGTCC
ATCGTCGCAGACAACATCGTACCGAAGCTCGTGGAGCGTGAGGTGGGTAT
TTAA
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Synonyms
Publications