NO16G02960, NO16G02960 (gene) Nannochloropsis oceanica

Overview
NameNO16G02960
Unique NameNO16G02960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1522
Alignment locationchr16:866731..868252 -

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Properties
Property NameValue
DescriptionSignal recognition particle-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:866731..868252 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0048500signal recognition particle
GO:0005786signal recognition particle, endoplasmic reticulum targeting
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: Molecular Function
TermDefinition
GO:00083127S RNA binding
GO:0030942endoplasmic reticulum signal peptide binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR009018Signal_recog_particle_SRP9/14
IPR003210Signal_recog_particle_SRP14
Homology
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BLAST of NO16G02960 vs. NCBI_GenBank
Match: XP_005854021.1 (signal recognition particle-like protein [Nannochloropsis gaditana CCMP526] >EKU22339.1 signal recognition particle-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 108.6 bits (270), Expect = 1.800e-20
Identity = 59/104 (56.73%), Postives = 78/104 (75.00%), Query Frame = 0 
Query:    1 MVVLKHTAFLTALATLFDATRSKGSVYVTIKKVKKHPVRGGQKALEKA-----MSLGDETHTLIRARTDKKRISTTVEEGEEAESFQAALAVVLGGNMTGLMKE 100
            MV+L  ++FL+AL +LF  TR+KGS+Y+TIKKV+KHPV GG+ A  +A       L DE H L+RA  +K++ STTVEEGE+A SFQ AL+ VLG NMTGL+K+
Sbjct:    7 MVLLDPSSFLSALDSLFHITRTKGSLYLTIKKVRKHPVHGGEAARARASQQQKSGLNDEMHILVRAHAEKQKFSTTVEEGEDAISFQEALSEVLGRNMTGLVKD 110
The following BLAST results are available for this feature:
BLAST of NO16G02960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854021.11.800e-2056.73signal recognition particle-like protein [Nannochl... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02960.1NO16G02960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02960.1NO16G02960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02960 ID=NO16G02960|Name=NO16G02960|organism=Nannochloropsis oceanica|type=gene|length=1522bp
TTTCTGCACCACGAAAAATTTACGTTCTTTCGAGCATTCTTCTCTCCCCC
CCCCTTTGTGATGGTGTAGTATATCTGCGCCGGGCCTTGAAATGAGGGCT
GAACATGGACAACGAAAGCGAGCAAAGAGAGCCGTCATTACATACACACT
TGACACAAAGAGACCTACACGTACAGATACTCGTGCAAACATTCATACAC
ACACACACTAATGCAATGACCAACATACATACCGGACAGACCTGTAGTGT
CTGTAACACAAACAATTACGACGAGATGCGGGAGGTGAGAAAGAAGCAGG
AGGAGTATTGGCGATGATTGCTGCTGATGATGGATGAACGCCATTGGCAC
ACAGAGACCACCAAATATACACACCACAACTTATACGTATCTCACTTCCA
TTCCACATTTTCTCCACTACTTCCTGACAGGGCGCACCTTTATTCTCCGT
CCAGCTGCAGAGCCGATTTCCTTCACCGCCTCCCACCCTCCAAGCCTCCC
ATCATAGAACAAAGCGTTTGCCCACCCAGCACACACCTCTCTCCTTAGCA
TGGTTGTCCTCAAGCACACCGCCTTTCTTACAGCCTTGGCGACACTCTTC
GATGCTACTCGTAGTAAAGGCTCTGTGTATGTGACCATCAAGAAAGgtag
atgcaatgtccctccttccttcccctgcccctccatcctttccctgcctt
ccctcccttcccctcctcccctcctcccctctctccccctcgtcctttta
gctggcaccttgagatgattgtgaaaatggtgccaggagaagcatacaga
aataatttccccactttctgttggcttctagcagcctttctcagactccc
gtttgctctcgttacccaccattgacctccctccctccctccctccctcc
ctcccaccccaccctcgccactctgcggtccagTCAAAAAGCACCCGGTA
CGCGGTGGACAAAAGGCGCTAGAAAAAGCCATGTCACTAGGCGACGAGAC
CCACACCCTCATCAGGGCACGCACGGACAAGAAGCGGATATCGACGACGG
TGGAGGAAGGGGAGGAGGCGGAGTCGTTTCAGGCAGCGTTGGCAGTGGTA
CTGGGGGGGAATATGACGGGATTAATGAAAGAGAAGGAGGGAGGGAGGAA
AGGGACAGGGGAAAATGGAGTGAGTGAGATGGAAGTGGTGGTGGTGGAGA
AGGAGGAGAAGGGGGAGGAAATGTCTGTGTCAGGGGCGACGTCAGGTGGA
GGGGGAGGAGGAGGGGGGGAGGAGGGGGGAAGAAGAAGAAGAAGAGGAGA
TAAGATATGGTGAGGGAGGACAAGCGGTCGGTGAGTGTCCATTCGATAGG
TAGAAAAGAAAAAGGTAATGAAATAAAGCGATTAAGACAGCCCAGACAGA
CAGACAGACAGACAGATAGACACACACACACACATACTCTAATATACGTG
CGGGATTGGAGGGTCCCTGTAGGTTTGTATTGCGCGTGGACGGAGGACAA
GATGATCCTGTACAATTTTTAA
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protein sequence of NO16G02960.1

>NO16G02960.1-protein ID=NO16G02960.1-protein|Name=NO16G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MVVLKHTAFLTALATLFDATRSKGSVYVTIKKVKKHPVRGGQKALEKAMS
LGDETHTLIRARTDKKRISTTVEEGEEAESFQAALAVVLGGNMTGLMKEK
EGGRKGTGENGVSEMEVVVVEKEEKGEEMSVSGATSGGGGGGGGEEGGRR
RRRGDKIW*
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Synonyms
Publications