NO16G02960.1, NO16G02960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02960.1
Unique NameNO16G02960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1235
Alignment locationchr16:866731..868252 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:866731..868252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02960.1 vs.
Match: XP_005854021.1 (signal recognition particle-like protein [Nannochloropsis gaditana CCMP526]; EKU22339.1 signal recognition particle-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 116.7 bits (291), Expect = 6.600e-23
Identity = 79/161 (49.07%), Postives = 102/161 (63.35%), Query Frame = 0 
Query:    1 MVVLKHTAFLTALATLFDATRSKGSVYVTIKKVKKHPVRGGQKALEKAMS-----LGDETHTLIRARTDKKRISTTVEEGEEAESFQAALAVVLGGNMTGLMKEKEGGRKGTGENGVSEMEVVVVEKEEKGEEMSVSGATSGGGGGGGGEEGGRRRRRGDK 157
            MV+L  ++FL+AL +LF  TR+KGS+Y+TIKKV+KHPV GG+ A  +A       L DE H L+RA  +K++ STTVEEGE+A SFQ AL+ VLG NMTGL+K+   G KG G+ G            +KG+E        GGG GG    G RRR RG+K
Sbjct:    7 MVLLDPSSFLSALDSLFHITRTKGSLYLTIKKVRKHPVHGGEAARARASQQQKSGLNDEMHILVRAHAEKQKFSTTVEEGEDAISFQEALSEVLGRNMTGLVKD---GNKGGGKKG------------KKGKEGGGGXXXXGGGHGGEFAGGTRRRARGEK 152
The following BLAST results are available for this feature:
BLAST of NO16G02960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854021.16.600e-2349.07signal recognition particle-like protein [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02960NO16G02960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02960.1NO16G02960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02960.1.cds1NO16G02960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02960.1.cds2NO16G02960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02960.1 ID=NO16G02960.1|Name=NO16G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1235bp
TTTCTGCACCACGAAAAATTTACGTTCTTTCGAGCATTCTTCTCTCCCCC
CCCCTTTGTGATGGTGTAGTATATCTGCGCCGGGCCTTGAAATGAGGGCT
GAACATGGACAACGAAAGCGAGCAAAGAGAGCCGTCATTACATACACACT
TGACACAAAGAGACCTACACGTACAGATACTCGTGCAAACATTCATACAC
ACACACACTAATGCAATGACCAACATACATACCGGACAGACCTGTAGTGT
CTGTAACACAAACAATTACGACGAGATGCGGGAGGTGAGAAAGAAGCAGG
AGGAGTATTGGCGATGATTGCTGCTGATGATGGATGAACGCCATTGGCAC
ACAGAGACCACCAAATATACACACCACAACTTATACGTATCTCACTTCCA
TTCCACATTTTCTCCACTACTTCCTGACAGGGCGCACCTTTATTCTCCGT
CCAGCTGCAGAGCCGATTTCCTTCACCGCCTCCCACCCTCCAAGCCTCCC
ATCATAGAACAAAGCGTTTGCCCACCCAGCACACACCTCTCTCCTTAGCA
TGGTTGTCCTCAAGCACACCGCCTTTCTTACAGCCTTGGCGACACTCTTC
GATGCTACTCGTAGTAAAGGCTCTGTGTATGTGACCATCAAGAAAGTCAA
AAAGCACCCGGTACGCGGTGGACAAAAGGCGCTAGAAAAAGCCATGTCAC
TAGGCGACGAGACCCACACCCTCATCAGGGCACGCACGGACAAGAAGCGG
ATATCGACGACGGTGGAGGAAGGGGAGGAGGCGGAGTCGTTTCAGGCAGC
GTTGGCAGTGGTACTGGGGGGGAATATGACGGGATTAATGAAAGAGAAGG
AGGGAGGGAGGAAAGGGACAGGGGAAAATGGAGTGAGTGAGATGGAAGTG
GTGGTGGTGGAGAAGGAGGAGAAGGGGGAGGAAATGTCTGTGTCAGGGGC
GACGTCAGGTGGAGGGGGAGGAGGAGGGGGGGAGGAGGGGGGAAGAAGAA
GAAGAAGAGGAGATAAGATATGGTGAGGGAGGACAAGCGGTCGGTGAGTG
TCCATTCGATAGGTAGAAAAGAAAAAGGTAATGAAATAAAGCGATTAAGA
CAGCCCAGACAGACAGACAGACAGACAGATAGACACACACACACACATAC
TCTAATATACGTGCGGGATTGGAGGGTCCCTGTAGGTTTGTATTGCGCGT
GGACGGAGGACAAGATGATCCTGTACAATTTTTAA
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protein sequence of NO16G02960.1

>NO16G02960.1-protein ID=NO16G02960.1-protein|Name=NO16G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MVVLKHTAFLTALATLFDATRSKGSVYVTIKKVKKHPVRGGQKALEKAMS
LGDETHTLIRARTDKKRISTTVEEGEEAESFQAALAVVLGGNMTGLMKEK
EGGRKGTGENGVSEMEVVVVEKEEKGEEMSVSGATSGGGGGGGGEEGGRR
RRRGDKIW*
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mRNA from alignment at chr16:866731..868252-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02960.1 ID=NO16G02960.1|Name=NO16G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1522bp|location=Sequence derived from alignment at chr16:866731..868252- (Nannochloropsis oceanica)
TTTCTGCACCACGAAAAATTTACGTTCTTTCGAGCATTCTTCTCTCCCCC
CCCCTTTGTGATGGTGTAGTATATCTGCGCCGGGCCTTGAAATGAGGGCT
GAACATGGACAACGAAAGCGAGCAAAGAGAGCCGTCATTACATACACACT
TGACACAAAGAGACCTACACGTACAGATACTCGTGCAAACATTCATACAC
ACACACACTAATGCAATGACCAACATACATACCGGACAGACCTGTAGTGT
CTGTAACACAAACAATTACGACGAGATGCGGGAGGTGAGAAAGAAGCAGG
AGGAGTATTGGCGATGATTGCTGCTGATGATGGATGAACGCCATTGGCAC
ACAGAGACCACCAAATATACACACCACAACTTATACGTATCTCACTTCCA
TTCCACATTTTCTCCACTACTTCCTGACAGGGCGCACCTTTATTCTCCGT
CCAGCTGCAGAGCCGATTTCCTTCACCGCCTCCCACCCTCCAAGCCTCCC
ATCATAGAACAAAGCGTTTGCCCACCCAGCACACACCTCTCTCCTTAGCA
TGGTTGTCCTCAAGCACACCGCCTTTCTTACAGCCTTGGCGACACTCTTC
GATGCTACTCGTAGTAAAGGCTCTGTGTATGTGACCATCAAGAAAGGTAG
ATGCAATGTCCCTCCTTCCTTCCCCTGCCCCTCCATCCTTTCCCTGCCTT
CCCTCCCTTCCCCTCCTCCCCTCCTCCCCTCTCTCCCCCTCGTCCTTTTA
GCTGGCACCTTGAGATGATTGTGAAAATGGTGCCAGGAGAAGCATACAGA
AATAATTTCCCCACTTTCTGTTGGCTTCTAGCAGCCTTTCTCAGACTCCC
GTTTGCTCTCGTTACCCACCATTGACCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCACCCCACCCTCGCCACTCTGCGGTCCAGTCAAAAAGCACCCGGTA
CGCGGTGGACAAAAGGCGCTAGAAAAAGCCATGTCACTAGGCGACGAGAC
CCACACCCTCATCAGGGCACGCACGGACAAGAAGCGGATATCGACGACGG
TGGAGGAAGGGGAGGAGGCGGAGTCGTTTCAGGCAGCGTTGGCAGTGGTA
CTGGGGGGGAATATGACGGGATTAATGAAAGAGAAGGAGGGAGGGAGGAA
AGGGACAGGGGAAAATGGAGTGAGTGAGATGGAAGTGGTGGTGGTGGAGA
AGGAGGAGAAGGGGGAGGAAATGTCTGTGTCAGGGGCGACGTCAGGTGGA
GGGGGAGGAGGAGGGGGGGAGGAGGGGGGAAGAAGAAGAAGAAGAGGAGA
TAAGATATGGTGAGGGAGGACAAGCGGTCGGTGAGTGTCCATTCGATAGG
TAGAAAAGAAAAAGGTAATGAAATAAAGCGATTAAGACAGCCCAGACAGA
CAGACAGACAGACAGATAGACACACACACACACATACTCTAATATACGTG
CGGGATTGGAGGGTCCCTGTAGGTTTGTATTGCGCGTGGACGGAGGACAA
GATGATCCTGTACAATTTTTAA
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Coding sequence (CDS) from alignment at chr16:866731..868252-

>NO16G02960.1 ID=NO16G02960.1|Name=NO16G02960.1|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at chr16:866731..868252- (Nannochloropsis oceanica)
ATGGTTGTCCTCAAGCACACCGCCTTTCTTACAGCCTTGGCGACACTCTT
CGATGCTACTCGTAGTAAAGGCTCTGTGTATGTGACCATCAAGAAAGTCA
AAAAGCACCCGGTACGCGGTGGACAAAAGGCGCTAGAAAAAGCCATGTCA
CTAGGCGACGAGACCCACACCCTCATCAGGGCACGCACGGACAAGAAGCG
GATATCGACGACGGTGGAGGAAGGGGAGGAGGCGGAGTCGTTTCAGGCAG
CGTTGGCAGTGGTACTGGGGGGGAATATGACGGGATTAATGAAAGAGAAG
GAGGGAGGGAGGAAAGGGACAGGGGAAAATGGAGTGAGTGAGATGGAAGT
GGTGGTGGTGGAGAAGGAGGAGAAGGGGGAGGAAATGTCTGTGTCAGGGG
CGACGTCAGGTGGAGGGGGAGGAGGAGGGGGGGAGGAGGGGGGAAGAAGA
AGAAGAAGAGGAGATAAGATATGGTGA
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Synonyms
Publications