NO16G02920, NO16G02920 (gene) Nannochloropsis oceanica

Overview
NameNO16G02920
Unique NameNO16G02920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length336
Alignment locationchr16:844088..844423 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:844088..844423 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011008Dimeric_a/b-barrel
IPR007138ABM_dom
Homology
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BLAST of NO16G02920 vs. NCBI_GenBank
Match: WP_068882044.1 (antibiotic biosynthesis monooxygenase [Paramesorhizobium deserti] >KXF77158.1 hypothetical protein ATN84_25400 [Paramesorhizobium deserti])

HSP 1 Score: 73.2 bits (178), Expect = 5.900e-10
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 0 
Query:    7 KEPVAILVEVTAKDGKYEELKAALQTHAATCLQEEVGCTRFEVLVPVTREGAREKGVGGRKLWLTEQYTNEEAVAVHQGTARMQVL 93
            ++P+A++VE T K GK EEL++ L+ HA   +++E GC RFEVL PV ++G+        +L LTE Y +E+A A H    R+  L
Sbjct:   25 RKPIAVVVEYTVKSGKEEELRSILREHARLTVEQEPGCLRFEVLQPVNKDGSAIPD----RLMLTELYADEDAAAAHANNPRLATL 106
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BLAST of NO16G02920 vs. NCBI_GenBank
Match: WP_104220187.1 (antibiotic biosynthesis monooxygenase [Kaistia sp. LYH11] >PPE78825.1 antibiotic biosynthesis monooxygenase [Kaistia sp. LYH11])

HSP 1 Score: 73.2 bits (178), Expect = 5.900e-10
Identity = 40/102 (39.22%), Postives = 57/102 (55.88%), Query Frame = 0 
Query:   10 VAILVEVTAKDGKYEELKAALQTHAATCLQEEVGCTRFEVLVPVTREGAREKGVGGRKLWLTEQYTNEEAVAVHQGTARMQVLGKKLGELTDDIRIVYGLQA 112
            + +LV+    +GK EEL A +  HA   L EE GC RF+V+ P+ R+G    G    +L LTE Y NE AVA+H+   RM  LG  +  L   + + +G+ A
Sbjct:    4 ITLLVDFEIIEGKDEELTALIAEHARLTLAEEPGCLRFDVVKPIERDGTPIAG----RLMLTEVYENEAAVAIHEKNPRMPGLGAAMKPLLVSMNVKFGMIA 101
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BLAST of NO16G02920 vs. NCBI_GenBank
Match: WP_008123119.1 (antibiotic biosynthesis monooxygenase [Phyllobacterium sp. YR531] >EJN04928.1 hypothetical protein PMI41_01394 [Phyllobacterium sp. YR531])

HSP 1 Score: 62.8 bits (151), Expect = 7.900e-7
Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 0 
Query:   10 VAILVEVTAKDGKYEELKAALQTHAATCLQEEVGCTRFEVLVPVTREGAREKGVGGRKLWLTEQYTNEEAVAVHQGTARMQVLGKKLGELTDDIRIV 107
            + I+VE    +GK EE    ++ HA   L+EE GC RFEV+ P+ R+G         K+ + E Y NE AV  H+   R+  + +  G L    R++
Sbjct:    4 LTIIVEFETNEGKEEEFLTRIREHARKTLEEEPGCLRFEVIKPIKRDGTPIP----NKVMVNELYANEAAVTAHESNPRLARVREANGPLLKSSRLI 96
[Close]
BLAST of NO16G02920 vs. NCBI_GenBank
Match: WP_055974221.1 (antibiotic biosynthesis monooxygenase [Aminobacter sp. Root100] >KQU72841.1 hypothetical protein ASC75_03940 [Aminobacter sp. Root100])

HSP 1 Score: 62.8 bits (151), Expect = 7.900e-7
Identity = 36/97 (37.11%), Postives = 49/97 (50.52%), Query Frame = 0 
Query:   10 VAILVEVTAKDGKYEELKAALQTHAATCLQEEVGCTRFEVLVPVTREGAREKGVGGRKLWLTEQYTNEEAVAVHQGTARMQVLGKKLGELTDDIRIV 107
            + I+VE    DG  E+    +  HA   LQEEVGC RFEV+ PV R+G         K+ + E Y +E AVA H+   RM  +   L  L    R++
Sbjct:    1 MTIIVEFETVDGAEEQFLDLISEHARATLQEEVGCLRFEVIKPVERDGTPIP----NKVMVNELYADESAVATHERNPRMPDVQAALSPLLKSRRLI 93
[Close]
BLAST of NO16G02920 vs. NCBI_GenBank
Match: WP_084507688.1 (antibiotic biosynthesis monooxygenase [Geminicoccus roseus])

HSP 1 Score: 62.8 bits (151), Expect = 7.900e-7
Identity = 36/97 (37.11%), Postives = 52/97 (53.61%), Query Frame = 0 
Query:   10 VAILVEVTAKDGKYEELKAALQTHAATCLQEEVGCTRFEVLVPVTREGAREKGVGGRKLWLTEQYTNEEAVAVHQGTARMQVLGKKLGELTDDIRIV 107
            +AI+VE    DG  EE    +  HA   L+EE GC RFEV+ P+ R+G         KL + E Y +E AV+ H+   RM  LG+   +L  + R++
Sbjct:    1 MAIIVEFDILDGHEEEFTRLISEHARLTLEEEEGCLRFEVIKPIERDGTPIP----NKLLVNELYADEPAVSRHEKNPRMPGLGEATRKLLANRRLI 93
The following BLAST results are available for this feature:
BLAST of NO16G02920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
WP_068882044.15.900e-1041.86antibiotic biosynthesis monooxygenase [Paramesorhi... [more]
WP_104220187.15.900e-1039.22antibiotic biosynthesis monooxygenase [Kaistia sp.... [more]
WP_008123119.17.900e-734.02antibiotic biosynthesis monooxygenase [Phyllobacte... [more]
WP_055974221.17.900e-737.11antibiotic biosynthesis monooxygenase [Aminobacter... [more]
WP_084507688.17.900e-737.11antibiotic biosynthesis monooxygenase [Geminicoccu... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02920.1NO16G02920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02920.1NO16G02920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02920 ID=NO16G02920|Name=NO16G02920|organism=Nannochloropsis oceanica|type=gene|length=336bp
ATGCCACTTGGCACCGGCAAGGAACCCGTCGCCATTCTAGTGGAGGTGAC
TGCGAAGGATGGAAAGTACGAGGAGCTGAAAGCCGCGTTACAGACACACG
CTGCTACCTGCCTTCAGGAGGAAGTTGGATGCACGCGTTTTGAAGTGCTG
GTGCCCGTGACGAGGGAGGGAGCGAGGGAAAAGGGGGTCGGGGGGAGGAA
GCTGTGGCTGACGGAACAGTATACGAATGAAGAGGCCGTGGCGGTGCATC
AAGGGACAGCAAGGATGCAGGTGCTCGGGAAGAAACTGGGCGAGTTGACG
GATGATATTCGAATCGTATACGGGTTGCAGGCTTAA
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protein sequence of NO16G02920.1

>NO16G02920.1-protein ID=NO16G02920.1-protein|Name=NO16G02920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MPLGTGKEPVAILVEVTAKDGKYEELKAALQTHAATCLQEEVGCTRFEVL
VPVTREGAREKGVGGRKLWLTEQYTNEEAVAVHQGTARMQVLGKKLGELT
DDIRIVYGLQA*
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Synonyms
Publications