NO16G02920.1, NO16G02920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02920.1
Unique NameNO16G02920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length336
Alignment locationchr16:844088..844423 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:844088..844423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02920.1 vs.
Match: WP_068882044.1 (antibiotic biosynthesis monooxygenase [Paramesorhizobium deserti]; KXF77158.1 hypothetical protein ATN84_25400 [Paramesorhizobium deserti])

HSP 1 Score: 73.2 bits (178), Expect = 5.900e-10
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 0 
Query:    7 KEPVAILVEVTAKDGKYEELKAALQTHAATCLQEEVGCTRFEVLVPVTREGAREKGVGGRKLWLTEQYTNEEAVAVHQGTARMQVL 93
            ++P+A++VE T K GK EEL++ L+ HA   +++E GC RFEVL PV ++G+        +L LTE Y +E+A A H    R+  L
Sbjct:   25 RKPIAVVVEYTVKSGKEEELRSILREHARLTVEQEPGCLRFEVLQPVNKDGSAIPD----RLMLTELYADEDAAAAHANNPRLATL 106
The following BLAST results are available for this feature:
BLAST of NO16G02920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_068882044.15.900e-1041.86antibiotic biosynthesis monooxygenase [Paramesorhi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02920NO16G02920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02920.1NO16G02920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02920.1.cds1NO16G02920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02920.1 ID=NO16G02920.1|Name=NO16G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=336bp
ATGCCACTTGGCACCGGCAAGGAACCCGTCGCCATTCTAGTGGAGGTGAC
TGCGAAGGATGGAAAGTACGAGGAGCTGAAAGCCGCGTTACAGACACACG
CTGCTACCTGCCTTCAGGAGGAAGTTGGATGCACGCGTTTTGAAGTGCTG
GTGCCCGTGACGAGGGAGGGAGCGAGGGAAAAGGGGGTCGGGGGGAGGAA
GCTGTGGCTGACGGAACAGTATACGAATGAAGAGGCCGTGGCGGTGCATC
AAGGGACAGCAAGGATGCAGGTGCTCGGGAAGAAACTGGGCGAGTTGACG
GATGATATTCGAATCGTATACGGGTTGCAGGCTTAA
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protein sequence of NO16G02920.1

>NO16G02920.1-protein ID=NO16G02920.1-protein|Name=NO16G02920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MPLGTGKEPVAILVEVTAKDGKYEELKAALQTHAATCLQEEVGCTRFEVL
VPVTREGAREKGVGGRKLWLTEQYTNEEAVAVHQGTARMQVLGKKLGELT
DDIRIVYGLQA*
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mRNA from alignment at chr16:844088..844423+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02920.1 ID=NO16G02920.1|Name=NO16G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=336bp|location=Sequence derived from alignment at chr16:844088..844423+ (Nannochloropsis oceanica)
ATGCCACTTGGCACCGGCAAGGAACCCGTCGCCATTCTAGTGGAGGTGAC
TGCGAAGGATGGAAAGTACGAGGAGCTGAAAGCCGCGTTACAGACACACG
CTGCTACCTGCCTTCAGGAGGAAGTTGGATGCACGCGTTTTGAAGTGCTG
GTGCCCGTGACGAGGGAGGGAGCGAGGGAAAAGGGGGTCGGGGGGAGGAA
GCTGTGGCTGACGGAACAGTATACGAATGAAGAGGCCGTGGCGGTGCATC
AAGGGACAGCAAGGATGCAGGTGCTCGGGAAGAAACTGGGCGAGTTGACG
GATGATATTCGAATCGTATACGGGTTGCAGGCTTAA
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Coding sequence (CDS) from alignment at chr16:844088..844423+

>NO16G02920.1 ID=NO16G02920.1|Name=NO16G02920.1|organism=Nannochloropsis oceanica|type=CDS|length=336bp|location=Sequence derived from alignment at chr16:844088..844423+ (Nannochloropsis oceanica)
ATGCCACTTGGCACCGGCAAGGAACCCGTCGCCATTCTAGTGGAGGTGAC
TGCGAAGGATGGAAAGTACGAGGAGCTGAAAGCCGCGTTACAGACACACG
CTGCTACCTGCCTTCAGGAGGAAGTTGGATGCACGCGTTTTGAAGTGCTG
GTGCCCGTGACGAGGGAGGGAGCGAGGGAAAAGGGGGTCGGGGGGAGGAA
GCTGTGGCTGACGGAACAGTATACGAATGAAGAGGCCGTGGCGGTGCATC
AAGGGACAGCAAGGATGCAGGTGCTCGGGAAGAAACTGGGCGAGTTGACG
GATGATATTCGAATCGTATACGGGTTGCAGGCTTAA
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Synonyms
Publications