NO16G02890, NO16G02890 (gene) Nannochloropsis oceanica

Overview
NameNO16G02890
Unique NameNO16G02890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1331
Alignment locationchr16:838336..839666 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:838336..839666 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
Homology
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BLAST of NO16G02890 vs. NCBI_GenBank
Match: XP_004997530.1 (Kifc3 protein [Salpingoeca rosetta] >EGD80969.1 Kifc3 protein [Salpingoeca rosetta])

HSP 1 Score: 77.8 bits (190), Expect = 7.900e-11
Identity = 41/112 (36.61%), Postives = 61/112 (54.46%), Query Frame = 0 
Query:  249 FKKADFDKNGILSHHEFMAFVRG--LRLGLNEKEVEQFTSLADSNGDGMVEWTEVLELTPLILRKLYTALPPGPHDWCAIIDAEE-NEYYLNKRTGLTVSTRPPDYVPVRTE 358
            F+ AD D NG+L   EF + +    L+L L++ E+EQ    AD +GDG + + E + +   +L  +Y       +DWC + D  + N YYLNKRTG T   RP ++   R E
Sbjct:   43 FQNADADNNGVLDVDEFESVLSSDTLKLNLSKDEMEQIRRSADQDGDGKISYEEFIPVFKEVLTVIYQEKEEDWNDWCQLRDPRDGNVYYLNKRTGATQVERPHNFHEERVE 154
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BLAST of NO16G02890 vs. NCBI_GenBank
Match: XP_001746591.1 (hypothetical protein, partial [Monosiga brevicollis MX1] >EDQ88487.1 predicted protein, partial [Monosiga brevicollis MX1])

HSP 1 Score: 71.6 bits (174), Expect = 5.600e-9
Identity = 40/112 (35.71%), Postives = 57/112 (50.89%), Query Frame = 0 
Query:  249 FKKADFDKNGILSHHEFMAFVRG--LRLGLNEKEVEQFTSLADSNGDGMVEWTEVLELTPLILRKLYTALPPGPHDWCAIIDAEE-NEYYLNKRTGLTVSTRPPDYVPVRTE 358
            F+ AD D NG L   EF   +    L L L++ EV +    AD++ DG++ + E + +   +LR +Y       +DW  + D E  N +YLNKRTG T   RP  Y   R E
Sbjct:   73 FRAADKDGNGSLDAQEFWNVLHSQTLNLNLSDSEVNELRDAADTDKDGVISYEEFIPVVKELLRTIYARKDDDWNDWSCLTDPETGNTFYLNKRTGETSRRRPTLYHEERRE 184
The following BLAST results are available for this feature:
BLAST of NO16G02890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_004997530.17.900e-1136.61Kifc3 protein [Salpingoeca rosetta] >EGD80969.1 Ki... [more]
XP_001746591.15.600e-935.71hypothetical protein, partial [Monosiga brevicolli... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02890.1NO16G02890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|649428gene_6185Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02890.1NO16G02890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02890 ID=NO16G02890|Name=NO16G02890|organism=Nannochloropsis oceanica|type=gene|length=1331bp
ATGGGTTCGGGTCAGAGCAGCGCCGCTCGAAGAAAAAAAGCAAAGAGTAT
GACCAATCCGCCAAGgtacgcaccctcctccttttacccctcttagcttc
tggtcttgcccgttttcactcacattactccaaacttcacaccaagCGTC
GCCGGAGACCTCGCACATAGCGCCAGTATTATTCTCAAGAGCAGCAGTAA
AAGCACTCATACGTTGGACGCAGCCGAGACCAGCAAGGCACAACGCCTGG
CCAAGAGCGCAGGGGATTTTGATGAGATAGTGGCGTGGCTGGATTGGGAG
TTTGCCAAGCATGATAACAACAAAGATGGCTTTCTCGATTACCATGAATT
TGTGCGGTTTATCCGCTCGCTGAACCTGAACATGACCACGAAGGAGGTGA
GTGGTGGTGCCCGAGTCGTTCGTGATCTTCACCCCAACCTCTTTTTTCAT
TCCCATTTCATTTCTACCCTTGGGCAGATTTTCCAATTTTTCCTCCTCGC
TGACCGTGACAATGACTATCGCATCGTTTGGTGCGAAATTGAGCAGGATG
TGCCTCGGATCTTGAGCAAAATTTACGAAGGAATACCGGAAGGGCCATCA
GATTGGTGCCTCATGAGCGGGAAGGAAGGGGGAAAGGAGGGGGAGGTGTG
GTATTTCAATAAACGGACATCGGATGTAAGAAAACAGACGCCGATAGAGC
TGGGAGATGGAGGAGGAGAGTATGGGATAAAGGAGAACGTGGACATGGGC
CAAGGAGGGCGAAAGGAGGCGGTGTTGGAAAACACCAAGACGCTTGACGT
GGCGCTGACGTGGTTGGATTGGGAGTTCAAGAAGGCGGATTTCGATAAAA
ATGGAATTTTGTCACATCATGAGTTCATGGCCTTTGTCCGGGGGCTGCGC
TTGGGCTTGAATGAAAAGGAGgtgagcagtctgtggggtatggaggaagg
ggaaggaaggagagggagaggggaaagggaggacagttttttttcttaat
atgtccagtctttaaaaaatatttcactcttcttcttttattctcatgcc
aatatcatctacagGTGGAACAATTTACCAGTCTGGCGGATTCCAACGGG
GACGGCATGGTGGAATGGACCGAGGTCCTGGAGCTCACACCCCTCATCCT
TCGCAAGCTCTACACCGCCCTTCCTCCCGGGCCACATGATTGGTGTGCTA
TTATCGACGCGGAAGAGAATGAATACTACCTGAACAAGCGCACGGGGCTG
ACAGTATCGACGCGTCCGCCTGATTATGTGCCGGTGAGGACCGAGACGGA
GGAGGGGAAAGCAGAGGGAGGGGAGGCTTGA
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protein sequence of NO16G02890.1

>NO16G02890.1-protein ID=NO16G02890.1-protein|Name=NO16G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MGSGQSSAARRKKAKSMTNPPSVAGDLAHSASIILKSSSKSTHTLDAAET
SKAQRLAKSAGDFDEIVAWLDWEFAKHDNNKDGFLDYHEFVRFIRSLNLN
MTTKEVSGGARVVRDLHPNLFFHSHFISTLGQIFQFFLLADRDNDYRIVW
CEIEQDVPRILSKIYEGIPEGPSDWCLMSGKEGGKEGEVWYFNKRTSDVR
KQTPIELGDGGGEYGIKENVDMGQGGRKEAVLENTKTLDVALTWLDWEFK
KADFDKNGILSHHEFMAFVRGLRLGLNEKEVEQFTSLADSNGDGMVEWTE
VLELTPLILRKLYTALPPGPHDWCAIIDAEENEYYLNKRTGLTVSTRPPD
YVPVRTETEEGKAEGGEA*
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Synonyms
Publications