NO16G02890.1, NO16G02890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02890.1
Unique NameNO16G02890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1107
Alignment locationchr16:838336..839666 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:838336..839666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO16G02890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02890NO16G02890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02890.1NO16G02890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02890.1.cds1NO16G02890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02890.1.cds2NO16G02890.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02890.1.cds3NO16G02890.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02890.1 ID=NO16G02890.1|Name=NO16G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1107bp
ATGGGTTCGGGTCAGAGCAGCGCCGCTCGAAGAAAAAAAGCAAAGAGTAT
GACCAATCCGCCAAGCGTCGCCGGAGACCTCGCACATAGCGCCAGTATTA
TTCTCAAGAGCAGCAGTAAAAGCACTCATACGTTGGACGCAGCCGAGACC
AGCAAGGCACAACGCCTGGCCAAGAGCGCAGGGGATTTTGATGAGATAGT
GGCGTGGCTGGATTGGGAGTTTGCCAAGCATGATAACAACAAAGATGGCT
TTCTCGATTACCATGAATTTGTGCGGTTTATCCGCTCGCTGAACCTGAAC
ATGACCACGAAGGAGGTGAGTGGTGGTGCCCGAGTCGTTCGTGATCTTCA
CCCCAACCTCTTTTTTCATTCCCATTTCATTTCTACCCTTGGGCAGATTT
TCCAATTTTTCCTCCTCGCTGACCGTGACAATGACTATCGCATCGTTTGG
TGCGAAATTGAGCAGGATGTGCCTCGGATCTTGAGCAAAATTTACGAAGG
AATACCGGAAGGGCCATCAGATTGGTGCCTCATGAGCGGGAAGGAAGGGG
GAAAGGAGGGGGAGGTGTGGTATTTCAATAAACGGACATCGGATGTAAGA
AAACAGACGCCGATAGAGCTGGGAGATGGAGGAGGAGAGTATGGGATAAA
GGAGAACGTGGACATGGGCCAAGGAGGGCGAAAGGAGGCGGTGTTGGAAA
ACACCAAGACGCTTGACGTGGCGCTGACGTGGTTGGATTGGGAGTTCAAG
AAGGCGGATTTCGATAAAAATGGAATTTTGTCACATCATGAGTTCATGGC
CTTTGTCCGGGGGCTGCGCTTGGGCTTGAATGAAAAGGAGGTGGAACAAT
TTACCAGTCTGGCGGATTCCAACGGGGACGGCATGGTGGAATGGACCGAG
GTCCTGGAGCTCACACCCCTCATCCTTCGCAAGCTCTACACCGCCCTTCC
TCCCGGGCCACATGATTGGTGTGCTATTATCGACGCGGAAGAGAATGAAT
ACTACCTGAACAAGCGCACGGGGCTGACAGTATCGACGCGTCCGCCTGAT
TATGTGCCGGTGAGGACCGAGACGGAGGAGGGGAAAGCAGAGGGAGGGGA
GGCTTGA
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protein sequence of NO16G02890.1

>NO16G02890.1-protein ID=NO16G02890.1-protein|Name=NO16G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MGSGQSSAARRKKAKSMTNPPSVAGDLAHSASIILKSSSKSTHTLDAAET
SKAQRLAKSAGDFDEIVAWLDWEFAKHDNNKDGFLDYHEFVRFIRSLNLN
MTTKEVSGGARVVRDLHPNLFFHSHFISTLGQIFQFFLLADRDNDYRIVW
CEIEQDVPRILSKIYEGIPEGPSDWCLMSGKEGGKEGEVWYFNKRTSDVR
KQTPIELGDGGGEYGIKENVDMGQGGRKEAVLENTKTLDVALTWLDWEFK
KADFDKNGILSHHEFMAFVRGLRLGLNEKEVEQFTSLADSNGDGMVEWTE
VLELTPLILRKLYTALPPGPHDWCAIIDAEENEYYLNKRTGLTVSTRPPD
YVPVRTETEEGKAEGGEA*
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mRNA from alignment at chr16:838336..839666+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02890.1 ID=NO16G02890.1|Name=NO16G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1331bp|location=Sequence derived from alignment at chr16:838336..839666+ (Nannochloropsis oceanica)
ATGGGTTCGGGTCAGAGCAGCGCCGCTCGAAGAAAAAAAGCAAAGAGTAT
GACCAATCCGCCAAGGTACGCACCCTCCTCCTTTTACCCCTCTTAGCTTC
TGGTCTTGCCCGTTTTCACTCACATTACTCCAAACTTCACACCAAGCGTC
GCCGGAGACCTCGCACATAGCGCCAGTATTATTCTCAAGAGCAGCAGTAA
AAGCACTCATACGTTGGACGCAGCCGAGACCAGCAAGGCACAACGCCTGG
CCAAGAGCGCAGGGGATTTTGATGAGATAGTGGCGTGGCTGGATTGGGAG
TTTGCCAAGCATGATAACAACAAAGATGGCTTTCTCGATTACCATGAATT
TGTGCGGTTTATCCGCTCGCTGAACCTGAACATGACCACGAAGGAGGTGA
GTGGTGGTGCCCGAGTCGTTCGTGATCTTCACCCCAACCTCTTTTTTCAT
TCCCATTTCATTTCTACCCTTGGGCAGATTTTCCAATTTTTCCTCCTCGC
TGACCGTGACAATGACTATCGCATCGTTTGGTGCGAAATTGAGCAGGATG
TGCCTCGGATCTTGAGCAAAATTTACGAAGGAATACCGGAAGGGCCATCA
GATTGGTGCCTCATGAGCGGGAAGGAAGGGGGAAAGGAGGGGGAGGTGTG
GTATTTCAATAAACGGACATCGGATGTAAGAAAACAGACGCCGATAGAGC
TGGGAGATGGAGGAGGAGAGTATGGGATAAAGGAGAACGTGGACATGGGC
CAAGGAGGGCGAAAGGAGGCGGTGTTGGAAAACACCAAGACGCTTGACGT
GGCGCTGACGTGGTTGGATTGGGAGTTCAAGAAGGCGGATTTCGATAAAA
ATGGAATTTTGTCACATCATGAGTTCATGGCCTTTGTCCGGGGGCTGCGC
TTGGGCTTGAATGAAAAGGAGGTGAGCAGTCTGTGGGGTATGGAGGAAGG
GGAAGGAAGGAGAGGGAGAGGGGAAAGGGAGGACAGTTTTTTTTCTTAAT
ATGTCCAGTCTTTAAAAAATATTTCACTCTTCTTCTTTTATTCTCATGCC
AATATCATCTACAGGTGGAACAATTTACCAGTCTGGCGGATTCCAACGGG
GACGGCATGGTGGAATGGACCGAGGTCCTGGAGCTCACACCCCTCATCCT
TCGCAAGCTCTACACCGCCCTTCCTCCCGGGCCACATGATTGGTGTGCTA
TTATCGACGCGGAAGAGAATGAATACTACCTGAACAAGCGCACGGGGCTG
ACAGTATCGACGCGTCCGCCTGATTATGTGCCGGTGAGGACCGAGACGGA
GGAGGGGAAAGCAGAGGGAGGGGAGGCTTGA
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Coding sequence (CDS) from alignment at chr16:838336..839666+

>NO16G02890.1 ID=NO16G02890.1|Name=NO16G02890.1|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at chr16:838336..839666+ (Nannochloropsis oceanica)
ATGGGTTCGGGTCAGAGCAGCGCCGCTCGAAGAAAAAAAGCAAAGAGTAT
GACCAATCCGCCAAGCGTCGCCGGAGACCTCGCACATAGCGCCAGTATTA
TTCTCAAGAGCAGCAGTAAAAGCACTCATACGTTGGACGCAGCCGAGACC
AGCAAGGCACAACGCCTGGCCAAGAGCGCAGGGGATTTTGATGAGATAGT
GGCGTGGCTGGATTGGGAGTTTGCCAAGCATGATAACAACAAAGATGGCT
TTCTCGATTACCATGAATTTGTGCGGTTTATCCGCTCGCTGAACCTGAAC
ATGACCACGAAGGAGGTGAGTGGTGGTGCCCGAGTCGTTCGTGATCTTCA
CCCCAACCTCTTTTTTCATTCCCATTTCATTTCTACCCTTGGGCAGATTT
TCCAATTTTTCCTCCTCGCTGACCGTGACAATGACTATCGCATCGTTTGG
TGCGAAATTGAGCAGGATGTGCCTCGGATCTTGAGCAAAATTTACGAAGG
AATACCGGAAGGGCCATCAGATTGGTGCCTCATGAGCGGGAAGGAAGGGG
GAAAGGAGGGGGAGGTGTGGTATTTCAATAAACGGACATCGGATGTAAGA
AAACAGACGCCGATAGAGCTGGGAGATGGAGGAGGAGAGTATGGGATAAA
GGAGAACGTGGACATGGGCCAAGGAGGGCGAAAGGAGGCGGTGTTGGAAA
ACACCAAGACGCTTGACGTGGCGCTGACGTGGTTGGATTGGGAGTTCAAG
AAGGCGGATTTCGATAAAAATGGAATTTTGTCACATCATGAGTTCATGGC
CTTTGTCCGGGGGCTGCGCTTGGGCTTGAATGAAAAGGAGGTGGAACAAT
TTACCAGTCTGGCGGATTCCAACGGGGACGGCATGGTGGAATGGACCGAG
GTCCTGGAGCTCACACCCCTCATCCTTCGCAAGCTCTACACCGCCCTTCC
TCCCGGGCCACATGATTGGTGTGCTATTATCGACGCGGAAGAGAATGAAT
ACTACCTGAACAAGCGCACGGGGCTGACAGTATCGACGCGTCCGCCTGAT
TATGTGCCGGTGAGGACCGAGACGGAGGAGGGGAAAGCAGAGGGAGGGGA
GGCTTGA
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Synonyms
Publications