NO16G02630, NO16G02630 (gene) Nannochloropsis oceanica

Overview
NameNO16G02630
Unique NameNO16G02630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1564
Alignment locationchr16:755468..757031 +

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Properties
Property NameValue
DescriptionEf-1 guanine nucleotide exchange domain-containing
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:755468..757031 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
GO:0006414translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0003746translation elongation factor activity
GO:0003746translation elongation factor activity
Vocabulary: INTERPRO
TermDefinition
IPR036219eEF-1beta-like_sf
IPR014038Transl_elong_fac_EF1B_bsu/dsu
Vocabulary: Cellular Component
TermDefinition
GO:0005853eukaryotic translation elongation factor 1 complex
Homology
[Close]
BLAST of NO16G02630 vs. NCBI_GenBank
Match: EWM23852.1 (ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 218.4 bits (555), Expect = 2.400e-53
Identity = 125/188 (66.49%), Postives = 135/188 (71.81%), Query Frame = 0 
Query:   47 TRTLLASTHSPNRRMTYPLQYDELSVALGYALLGAAGAPAAKTAPAGKPXXXXXXXXXXXXXXXXXXXXTAKPTLSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVDLDELYTTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVEKIEAMEDQVQSVDINSFNKL 235
            T+TL  S    +  MTY +QYDELSVALGYAL G AGAPA K APA K                     T K T+SRAEQVAAMKAE           DRSQIVLEVKPTDT+VDLD LY TIKKE+ P GLTWGEGYNK+PVA+GIFKLIIS+VVFDDEVSIDDVV+KIEAMED VQSVDINSFNKL
Sbjct:    3 TKTLTCSALQVS-LMTYAMQYDELSVALGYALFGTAGAPAGKAAPAAKSTKKPAAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEXXXXXXXXXXXDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
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BLAST of NO16G02630 vs. NCBI_GenBank
Match: XP_005853780.1 (ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana CCMP526] >EKU22580.1 ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 200.7 bits (509), Expect = 5.100e-48
Identity = 115/174 (66.09%), Postives = 123/174 (70.69%), Query Frame = 0 
Query:   61 MTYPLQYDELSVALGYALLGAAGAPAAKTAPAGKPXXXXXXXXXXXXXXXXXXXXTAKPTLSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVDLDELYTTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVEKIEAMEDQVQSVDINSFNKL 235
            MTY +QYDELSVALGYAL G AGAPA K APA                       T K T+SRAEQVAAMK                QIVLEVKPTDT+VDLD LY TIKKE+ P GLTWGEGYNK+PVA+GIFKLIIS+VVFDDEVSIDDVV+KIEAMED VQSVDINSFNKL
Sbjct:    1 MTYAMQYDELSVALGYALFGTAGAPAGKAAPAA------TAEDDDMDLFGDDEDETPKATMSRAEQVAAMKXXXXXXXXXXXXXXXXQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 168
[Close]
BLAST of NO16G02630 vs. NCBI_GenBank
Match: EWM27134.1 (ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 182.2 bits (461), Expect = 1.900e-42
Identity = 98/115 (85.22%), Postives = 103/115 (89.57%), Query Frame = 0 
Query:  120 TLSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVDLDELYTTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVEKIEAMEDQVQSVDINSFNKL 235
            T+SRAEQVAAMKA         KKRDRSQIVLEVKPTDTEV+LDELY TIK+EI PSGLTWGEGYNKSPVA+GIFKLIISMVV+DDEVSIDDVVEKIEAMED VQSVDINSFNKL
Sbjct:  110 TMSRAEQVAAMKAXXXXXXXXXKKRDRSQIVLEVKPTDTEVNLDELYKTIKEEICPSGLTWGEGYNKSPVAFGIFKLIISMVVYDDEVSIDDVVEKIEAMEDSVQSVDINSFNKL 224
[Close]
BLAST of NO16G02630 vs. NCBI_GenBank
Match: CBN77382.1 (eukaryotic elongation factor-1 B beta [Ectocarpus siliculosus])

HSP 1 Score: 101.7 bits (252), Expect = 3.200e-18
Identity = 61/114 (53.51%), Postives = 79/114 (69.30%), Query Frame = 0 
Query:  122 SRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVDLDELYTTI-KKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVEKIEAMEDQVQSVDINSFNKL 235
            SRAE++A  KA K+AK    KK DRSQIV EVKP DTE DL  L+  I K EI   GL WGE +   PVA+G+ KL++S VV DD+V ++D+ + IE  ED+VQSVD+ + N+L
Sbjct:  125 SRAEKMAEAKAAKDAK----KKIDRSQIVFEVKPWDTETDLKGLFAKICKTEI--EGLVWGEAHKLVPVAFGVKKLVLSCVVEDDKVGVEDITDVIEGFEDEVQSVDMTTMNRL 232
[Close]
BLAST of NO16G02630 vs. NCBI_GenBank
Match: CBN79710.1 (Lysyl-tRNA ligase [Ectocarpus siliculosus])

HSP 1 Score: 98.6 bits (244), Expect = 2.700e-17
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 0 
Query:  121 LSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVDLDELYTTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVEKIEAMEDQVQSVDINSFNKL 235
            +SRAEQ+AA K+ K+    ANKK DRSQIV EVKP +   DL  L+  I+K     GL WGE +   PVA+G+ KL++S VV D +V ++D+ + IE  ED+VQSVD+ + N+L
Sbjct:  741 MSRAEQMAAAKSAKD----ANKKVDRSQIVFEVKPWEAGADLKGLFDKIRK-TEIDGLVWGEAHKLVPVAFGVKKLVLSCVVVDSKVGVEDITDVIEKFEDEVQSVDMTTMNRL 849
[Close]
BLAST of NO16G02630 vs. NCBI_GenBank
Match: XP_024579104.1 (ef-1 guanine nucleotide exchange domain-containing [Plasmopara halstedii] >CEG42735.1 ef-1 guanine nucleotide exchange domain-containing [Plasmopara halstedii])

HSP 1 Score: 97.4 bits (241), Expect = 6.100e-17
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 0 
Query:  145 DRSQIVLEVKPTDTEVDLDELYTTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVEKIEAMEDQVQSVDINSFNKL 235
            +RSQ+V+EVKP + E DL+EL T I K +   GLTWGEG+   PVA+GI KL++  V+ DD V +DD+ E IE+ ED VQSVDI S NKL
Sbjct:  109 ERSQVVIEVKPWEAETDLEELATKI-KAVPIEGLTWGEGHKLVPVAFGIKKLLVQCVIVDDLVLLDDITEAIESFEDYVQSVDIASMNKL 197
[Close]
BLAST of NO16G02630 vs. NCBI_GenBank
Match: XP_009524143.1 (hypothetical protein PHYSODRAFT_354390 [Phytophthora sojae] >EGZ21426.1 hypothetical protein PHYSODRAFT_354390 [Phytophthora sojae])

HSP 1 Score: 95.5 bits (236), Expect = 2.300e-16
Identity = 50/90 (55.56%), Postives = 63/90 (70.00%), Query Frame = 0 
Query:  145 DRSQIVLEVKPTDTEVDLDELYTTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVEKIEAMEDQVQSVDINSFNKL 235
            +RSQ+V+EVKP + E DL+EL   I K +   GLTWGEG+   PVA+GI KL++  V+ DD V +DD+ E IE  ED VQSVDI S NKL
Sbjct:  141 ERSQVVIEVKPWEAETDLEELAAKI-KALPVEGLTWGEGHKLVPVAFGIKKLLVQCVIIDDLVLLDDITEAIEGFEDYVQSVDIASMNKL 229
[Close]
BLAST of NO16G02630 vs. NCBI_GenBank
Match: XP_009514086.1 (hypothetical protein PHYSODRAFT_353349 [Phytophthora sojae] >EGZ26811.1 hypothetical protein PHYSODRAFT_353349 [Phytophthora sojae])

HSP 1 Score: 95.5 bits (236), Expect = 2.300e-16
Identity = 50/90 (55.56%), Postives = 63/90 (70.00%), Query Frame = 0 
Query:  145 DRSQIVLEVKPTDTEVDLDELYTTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVEKIEAMEDQVQSVDINSFNKL 235
            +RSQ+V+EVKP + E DL+EL   I K +   GLTWGEG+   PVA+GI KL++  V+ DD V +DD+ E IE  ED VQSVDI S NKL
Sbjct:  102 ERSQVVIEVKPWEAETDLEELAAKI-KALPVEGLTWGEGHKLVPVAFGIKKLLVQCVIIDDLVLLDDITEAIEGFEDYVQSVDIASMNKL 190
[Close]
BLAST of NO16G02630 vs. NCBI_GenBank
Match: CBN78169.2 (conserved unknown protein (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 94.4 bits (233), Expect = 5.200e-16
Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = 0 
Query:  140 ANKKRDRSQIVLEVKPTDTEVDLDELYTTI-KKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVEKIEAMEDQVQSVDINSFNKL 235
            A KK DRSQIV EVKP DTE DL EL+  I   EI   GL WGE +   PVA+G+ KL++S VV DD+V ++D+ + IEA ED VQSVD+ + N+L
Sbjct:   89 AKKKIDRSQIVFEVKPWDTETDLKELFGKICATEI--DGLVWGEAHKLVPVAFGVKKLVLSCVVEDDKVGVEDITDVIEAFEDYVQSVDMTTMNRL 182
[Close]
BLAST of NO16G02630 vs. NCBI_GenBank
Match: ETO75822.1 (hypothetical protein F444_08640 [Phytophthora parasitica P1976])

HSP 1 Score: 94.4 bits (233), Expect = 5.200e-16
Identity = 49/90 (54.44%), Postives = 63/90 (70.00%), Query Frame = 0 
Query:  145 DRSQIVLEVKPTDTEVDLDELYTTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVEKIEAMEDQVQSVDINSFNKL 235
            +RSQ+V+EVKP + E DL+EL   I K +   GLTWGEG+   PVA+GI KL++  V+ DD V +DD+ + IE  ED VQSVDI S NKL
Sbjct:  140 ERSQVVIEVKPWEAETDLEELAAKI-KALPVEGLTWGEGHKLVPVAFGIKKLLVQCVIIDDLVLLDDITDAIEGFEDYVQSVDIASMNKL 228
The following BLAST results are available for this feature:
BLAST of NO16G02630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23852.12.400e-5366.49ef-1 guanine nucleotide exchange domain-containing... [more]
XP_005853780.15.100e-4866.09ef-1 guanine nucleotide exchange domain-containing... [more]
EWM27134.11.900e-4285.22ef-1 guanine nucleotide exchange domain-containing... [more]
CBN77382.13.200e-1853.51eukaryotic elongation factor-1 B beta [Ectocarpus ... [more]
CBN79710.12.700e-1749.12Lysyl-tRNA ligase [Ectocarpus siliculosus][more]
XP_024579104.16.100e-1756.67ef-1 guanine nucleotide exchange domain-containing... [more]
XP_009524143.12.300e-1655.56hypothetical protein PHYSODRAFT_354390 [Phytophtho... [more]
XP_009514086.12.300e-1655.56hypothetical protein PHYSODRAFT_353349 [Phytophtho... [more]
CBN78169.25.200e-1655.21conserved unknown protein (Partial), partial [Ecto... [more]
ETO75822.15.200e-1654.44hypothetical protein F444_08640 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL151nonsL151Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003270NSK003270Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02630.1NO16G02630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593966gene_6159Nannochloropsis oceanica (N. oceanica CCMP1779)gene
EEF1Bbetagene6608Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02630.1NO16G02630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02630 ID=NO16G02630|Name=NO16G02630|organism=Nannochloropsis oceanica|type=gene|length=1564bp
TTCTGACGCTCTCCCTCCTGTCTGATCGCATAGGTAGGGTTGGCGTAAAT
CATGGGCAGTGGAGTGGCAAATGAGCATAATCAAAAAGAAAGCAATACGA
AGAAAAGAAGTGAGCGAGCCCCAGAATCGCCGGATGGACAGACGCGCTCT
CAAAGCCACACACATGCAGGTGTATGTTGGATCTCCCCTTTTCCTTACGC
CCTCTTTTTGTTCTTGCTTTTCTCCTTTCCTGCAAGGATGCTTTCGGGAC
TCATCAATCACGTTTGCGAGTCTTCCCACCATTCAATCACCCGCCCACCA
CATCCCCCATTACAAGGACCCTTCTCGCTTCTACACACAGCCCGAACCGA
AGAATGACCTATCCCCTTCAGTACGACGAGCTCTCCGTGGCCTTGGGCTA
CGCTCTTCTGGGTGCAGCCGGCGCCCCTGCGGCCAAGACAGCTCCCGCCG
GCAgtaagttggaagggaggtaggggaaagggtgggtacgtggttgcggg
gacggataggttcgttttgttcgatgacgaatgatgatgtagacggcgat
gcgatgacgggaatgaccctcgttgcaggcctcctagagctttcatgtag
acgcaaatgaggtggaatgagaagagggagagtgtcagggaggaggggca
tttgctgagaagcgaacggaggctgcataagcagtctctcccctcgtttt
gtgtatgcgtcatcggtatcgtcgtgcggatgtagctattttctccggag
cttatgcctggacataggctcatacaggaggtttttggttttactcaccc
ccaccatctcctttccacccccctcttccttcccctccacattgactaca
cgcgcccttccgcactacctcgtcccatctcatttctccacagAGCCCGC
CAAGAAGGCTGCCGCGgtacgtgcatgtttgcataagtcgatttctgctc
gtcttctttcatattttatcctctgtctttttcaactatgtgagctgttt
atcggcgtcgccctccttccctcccatccgccctctcatcgatcctccct
ccctctatctttttctccttcaaaaacagGACGATGACGACATGGACCTG
TTTGGGGACGACGACGAGGAGACCGCCAAGCCCACACTCTCCCGCGCGGA
GCAAGTGGCAGCGATGAAGGCCGAGAAGGAGGCCAAGGAGAAGGCGAACA
AAAAGCGAGACAGGAGCCAGATCGTGCTGGAAGTCAAACCGACCGACACG
GAGGTGGACCTTGACGAGCTGTACACGACGATTAAGAAGGAGATCAGCCC
GTCCGGCTTGACGTGGGGCGAGGGCTACAACAAGTCGCCCGTGGCATACG
GCATCTTCAAGCTCATCATCTCCATGGTGGTGTTCGACGACGAGGTCTCC
ATCGACGACGTGGTAGAAAAGATCGAGGCCATGGAGGACCAGGTGCAGTC
CGTCGACATCAACTCTTTCAACAAGCTTTAATCTGCGGGCGGCGAGGAGG
GACAAGGGAGGGGGAGCGGGGGCATGTGGAGGGGAAGTACGTGTGCCGGC
GCCTGCCCGGGGGG
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protein sequence of NO16G02630.1

>NO16G02630.1-protein ID=NO16G02630.1-protein|Name=NO16G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MLDLPFSLRPLFVLAFLLSCKDAFGTHQSRLRVFPPFNHPPTTSPITRTL
LASTHSPNRRMTYPLQYDELSVALGYALLGAAGAPAAKTAPAGKPAKKAA
ADDDDMDLFGDDDEETAKPTLSRAEQVAAMKAEKEAKEKANKKRDRSQIV
LEVKPTDTEVDLDELYTTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISM
VVFDDEVSIDDVVEKIEAMEDQVQSVDINSFNKL*
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Synonyms
Publications