NO16G02630.1, NO16G02630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02630.1
Unique NameNO16G02630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length961
Alignment locationchr16:755468..757031 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:755468..757031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02630.1 vs.
Match: EWM23852.1 (ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 278.1 bits (710), Expect = 2.500e-71
Identity = 151/188 (80.32%), Postives = 164/188 (87.23%), Query Frame = 0 
Query:   47 TRTLLASTHSPNRRMTYPLQYDELSVALGYALLGAAGAPAAKTAPAGKPAKKAAADDDDMDLFGDDDEETAKPTLSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVDLDELYTTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVEKIEAMEDQVQSVDINSFNKL 235
            T+TL  S    +  MTY +QYDELSVALGYAL G AGAPA K APA K  KK AA+DDDMDLFGDD++ET K T+SRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDT+VDLD LY TIKKE+ P GLTWGEGYNK+PVA+GIFKLIIS+VVFDDEVSIDDVV+KIEAMED VQSVDINSFNKL
Sbjct:    3 TKTLTCSALQVSL-MTYAMQYDELSVALGYALFGTAGAPAGKAAPAAKSTKKPAAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
The following BLAST results are available for this feature:
BLAST of NO16G02630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23852.12.500e-7180.32ef-1 guanine nucleotide exchange domain-containing... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02630NO16G02630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02630.1NO16G02630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02630.1.cds1NO16G02630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02630.1.cds2NO16G02630.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02630.1.cds3NO16G02630.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02630.1 ID=NO16G02630.1|Name=NO16G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=961bp
TTCTGACGCTCTCCCTCCTGTCTGATCGCATAGGTAGGGTTGGCGTAAAT
CATGGGCAGTGGAGTGGCAAATGAGCATAATCAAAAAGAAAGCAATACGA
AGAAAAGAAGTGAGCGAGCCCCAGAATCGCCGGATGGACAGACGCGCTCT
CAAAGCCACACACATGCAGGTGTATGTTGGATCTCCCCTTTTCCTTACGC
CCTCTTTTTGTTCTTGCTTTTCTCCTTTCCTGCAAGGATGCTTTCGGGAC
TCATCAATCACGTTTGCGAGTCTTCCCACCATTCAATCACCCGCCCACCA
CATCCCCCATTACAAGGACCCTTCTCGCTTCTACACACAGCCCGAACCGA
AGAATGACCTATCCCCTTCAGTACGACGAGCTCTCCGTGGCCTTGGGCTA
CGCTCTTCTGGGTGCAGCCGGCGCCCCTGCGGCCAAGACAGCTCCCGCCG
GCAAGCCCGCCAAGAAGGCTGCCGCGGACGATGACGACATGGACCTGTTT
GGGGACGACGACGAGGAGACCGCCAAGCCCACACTCTCCCGCGCGGAGCA
AGTGGCAGCGATGAAGGCCGAGAAGGAGGCCAAGGAGAAGGCGAACAAAA
AGCGAGACAGGAGCCAGATCGTGCTGGAAGTCAAACCGACCGACACGGAG
GTGGACCTTGACGAGCTGTACACGACGATTAAGAAGGAGATCAGCCCGTC
CGGCTTGACGTGGGGCGAGGGCTACAACAAGTCGCCCGTGGCATACGGCA
TCTTCAAGCTCATCATCTCCATGGTGGTGTTCGACGACGAGGTCTCCATC
GACGACGTGGTAGAAAAGATCGAGGCCATGGAGGACCAGGTGCAGTCCGT
CGACATCAACTCTTTCAACAAGCTTTAATCTGCGGGCGGCGAGGAGGGAC
AAGGGAGGGGGAGCGGGGGCATGTGGAGGGGAAGTACGTGTGCCGGCGCC
TGCCCGGGGGG
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protein sequence of NO16G02630.1

>NO16G02630.1-protein ID=NO16G02630.1-protein|Name=NO16G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MLDLPFSLRPLFVLAFLLSCKDAFGTHQSRLRVFPPFNHPPTTSPITRTL
LASTHSPNRRMTYPLQYDELSVALGYALLGAAGAPAAKTAPAGKPAKKAA
ADDDDMDLFGDDDEETAKPTLSRAEQVAAMKAEKEAKEKANKKRDRSQIV
LEVKPTDTEVDLDELYTTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISM
VVFDDEVSIDDVVEKIEAMEDQVQSVDINSFNKL*
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mRNA from alignment at chr16:755468..757031+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02630.1 ID=NO16G02630.1|Name=NO16G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1564bp|location=Sequence derived from alignment at chr16:755468..757031+ (Nannochloropsis oceanica)
TTCTGACGCTCTCCCTCCTGTCTGATCGCATAGGTAGGGTTGGCGTAAAT
CATGGGCAGTGGAGTGGCAAATGAGCATAATCAAAAAGAAAGCAATACGA
AGAAAAGAAGTGAGCGAGCCCCAGAATCGCCGGATGGACAGACGCGCTCT
CAAAGCCACACACATGCAGGTGTATGTTGGATCTCCCCTTTTCCTTACGC
CCTCTTTTTGTTCTTGCTTTTCTCCTTTCCTGCAAGGATGCTTTCGGGAC
TCATCAATCACGTTTGCGAGTCTTCCCACCATTCAATCACCCGCCCACCA
CATCCCCCATTACAAGGACCCTTCTCGCTTCTACACACAGCCCGAACCGA
AGAATGACCTATCCCCTTCAGTACGACGAGCTCTCCGTGGCCTTGGGCTA
CGCTCTTCTGGGTGCAGCCGGCGCCCCTGCGGCCAAGACAGCTCCCGCCG
GCAGTAAGTTGGAAGGGAGGTAGGGGAAAGGGTGGGTACGTGGTTGCGGG
GACGGATAGGTTCGTTTTGTTCGATGACGAATGATGATGTAGACGGCGAT
GCGATGACGGGAATGACCCTCGTTGCAGGCCTCCTAGAGCTTTCATGTAG
ACGCAAATGAGGTGGAATGAGAAGAGGGAGAGTGTCAGGGAGGAGGGGCA
TTTGCTGAGAAGCGAACGGAGGCTGCATAAGCAGTCTCTCCCCTCGTTTT
GTGTATGCGTCATCGGTATCGTCGTGCGGATGTAGCTATTTTCTCCGGAG
CTTATGCCTGGACATAGGCTCATACAGGAGGTTTTTGGTTTTACTCACCC
CCACCATCTCCTTTCCACCCCCCTCTTCCTTCCCCTCCACATTGACTACA
CGCGCCCTTCCGCACTACCTCGTCCCATCTCATTTCTCCACAGAGCCCGC
CAAGAAGGCTGCCGCGGTACGTGCATGTTTGCATAAGTCGATTTCTGCTC
GTCTTCTTTCATATTTTATCCTCTGTCTTTTTCAACTATGTGAGCTGTTT
ATCGGCGTCGCCCTCCTTCCCTCCCATCCGCCCTCTCATCGATCCTCCCT
CCCTCTATCTTTTTCTCCTTCAAAAACAGGACGATGACGACATGGACCTG
TTTGGGGACGACGACGAGGAGACCGCCAAGCCCACACTCTCCCGCGCGGA
GCAAGTGGCAGCGATGAAGGCCGAGAAGGAGGCCAAGGAGAAGGCGAACA
AAAAGCGAGACAGGAGCCAGATCGTGCTGGAAGTCAAACCGACCGACACG
GAGGTGGACCTTGACGAGCTGTACACGACGATTAAGAAGGAGATCAGCCC
GTCCGGCTTGACGTGGGGCGAGGGCTACAACAAGTCGCCCGTGGCATACG
GCATCTTCAAGCTCATCATCTCCATGGTGGTGTTCGACGACGAGGTCTCC
ATCGACGACGTGGTAGAAAAGATCGAGGCCATGGAGGACCAGGTGCAGTC
CGTCGACATCAACTCTTTCAACAAGCTTTAATCTGCGGGCGGCGAGGAGG
GACAAGGGAGGGGGAGCGGGGGCATGTGGAGGGGAAGTACGTGTGCCGGC
GCCTGCCCGGGGGG
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Coding sequence (CDS) from alignment at chr16:755468..757031+

>NO16G02630.1 ID=NO16G02630.1|Name=NO16G02630.1|organism=Nannochloropsis oceanica|type=CDS|length=705bp|location=Sequence derived from alignment at chr16:755468..757031+ (Nannochloropsis oceanica)
ATGTTGGATCTCCCCTTTTCCTTACGCCCTCTTTTTGTTCTTGCTTTTCT
CCTTTCCTGCAAGGATGCTTTCGGGACTCATCAATCACGTTTGCGAGTCT
TCCCACCATTCAATCACCCGCCCACCACATCCCCCATTACAAGGACCCTT
CTCGCTTCTACACACAGCCCGAACCGAAGAATGACCTATCCCCTTCAGTA
CGACGAGCTCTCCGTGGCCTTGGGCTACGCTCTTCTGGGTGCAGCCGGCG
CCCCTGCGGCCAAGACAGCTCCCGCCGGCAAGCCCGCCAAGAAGGCTGCC
GCGGACGATGACGACATGGACCTGTTTGGGGACGACGACGAGGAGACCGC
CAAGCCCACACTCTCCCGCGCGGAGCAAGTGGCAGCGATGAAGGCCGAGA
AGGAGGCCAAGGAGAAGGCGAACAAAAAGCGAGACAGGAGCCAGATCGTG
CTGGAAGTCAAACCGACCGACACGGAGGTGGACCTTGACGAGCTGTACAC
GACGATTAAGAAGGAGATCAGCCCGTCCGGCTTGACGTGGGGCGAGGGCT
ACAACAAGTCGCCCGTGGCATACGGCATCTTCAAGCTCATCATCTCCATG
GTGGTGTTCGACGACGAGGTCTCCATCGACGACGTGGTAGAAAAGATCGA
GGCCATGGAGGACCAGGTGCAGTCCGTCGACATCAACTCTTTCAACAAGC
TTTAA
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Synonyms
Publications