NO16G02620, NO16G02620 (gene) Nannochloropsis oceanica

Overview
NameNO16G02620
Unique NameNO16G02620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length686
Alignment locationchr16:754647..755332 -

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Properties
Property NameValue
DescriptionImmediate early response 3-interacting protein 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:754647..755332 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013880Yos1
Homology
BLAST of NO16G02620 vs. NCBI_GenBank
Match: XP_005853781.1 (hypothetical protein NGA_0459200 [Nannochloropsis gaditana CCMP526] >EKU22581.1 hypothetical protein NGA_0459200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 132.9 bits (333), Expect = 4.400e-28
Identity = 64/78 (82.05%), Postives = 72/78 (92.31%), Query Frame = 0
Query:    1 MAFTLWSLYKSGLLFINGVAVLHRKRFLRKYGLDVAESSDATSIKTQIIGLLNAIQYLKVPLITLNIATVMVELLFGG 79
            MAFT+WSLYKSGLLF NGVAVLHRKRFLRKYGLDVAE +D TSI+ Q++GLLNA+QYLKVPLI LNI TV++ELLFGG
Sbjct:    1 MAFTIWSLYKSGLLFTNGVAVLHRKRFLRKYGLDVAEVADTTSIRNQVVGLLNAVQYLKVPLIALNIVTVVIELLFGG 78          
BLAST of NO16G02620 vs. NCBI_GenBank
Match: XP_012206288.1 (hypothetical protein SPRG_11844 [Saprolegnia parasitica CBS 223.65] >KDO22997.1 hypothetical protein SPRG_11844 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 77.8 bits (190), Expect = 1.700e-11
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 0
Query:    5 LWSLYKSGLLFINGVAVLHRKRFLRKYGLDVAESSD--ATSIKTQIIGLLNAIQYLKVPLITLNIATVMVELLFG 78
            +W L  S LL +N +A+LH KRFLR+YG D  E+S   + S+K Q++G L A+QYL++PL+ +NI  + +ELL G
Sbjct:    4 IWKLIMSSLLSVNALAILHEKRFLRRYGYDQLEASSGGSPSMKNQVVGFLVAVQYLRMPLVVINIVAIFLELLMG 78          
BLAST of NO16G02620 vs. NCBI_GenBank
Match: GAX99184.1 (Hypothetical protein PINS_007043 [Pythium insidiosum])

HSP 1 Score: 77.0 bits (188), Expect = 2.900e-11
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 0
Query:    5 LWSLYKSGLLFINGVAVLHRKRFLRKYGLDVAESSDATSIKTQIIGLLNAIQYLKVPLITLNIATVMVELLFG 78
            LW  + S LL  N V +LH KRFLRKYG D  + S   +I+ QI+G L A+QYL+VPLI +N   ++++L+ G
Sbjct:    4 LWGFFLSSLLLTNAVCILHEKRFLRKYGWDKVDPSQGMTIRNQIVGFLVAVQYLRVPLIVVNALMILLQLVMG 76          
BLAST of NO16G02620 vs. NCBI_GenBank
Match: XP_008608353.1 (hypothetical protein SDRG_04456 [Saprolegnia diclina VS20] >EQC38026.1 hypothetical protein SDRG_04456 [Saprolegnia diclina VS20])

HSP 1 Score: 76.6 bits (187), Expect = 3.700e-11
Identity = 35/75 (46.67%), Postives = 53/75 (70.67%), Query Frame = 0
Query:    5 LWSLYKSGLLFINGVAVLHRKRFLRKYGLDVAESSD--ATSIKTQIIGLLNAIQYLKVPLITLNIATVMVELLFG 78
            +W L  + LL +N +A+LH KRFLR+YG D  E+S   + S+K Q++G L A+QYL++PL+ +NI  + +ELL G
Sbjct:    4 IWKLIMTSLLSVNALAILHEKRFLRRYGYDQLEASSGGSPSMKNQVVGFLVAVQYLRMPLVVINIVAIFLELLMG 78          
BLAST of NO16G02620 vs. NCBI_GenBank
Match: OAO13212.1 (Yos1-like protein [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 73.6 bits (179), Expect = 3.200e-10
Identity = 35/75 (46.67%), Postives = 55/75 (73.33%), Query Frame = 0
Query:    4 TLWSLYKSGLLFINGVAVLHRKRFLRKYGLDVAESS-DATSIKTQIIGLLNAIQYLKVPLITLNIATVMVELLFG 78
            +LW+L K+ LLF+N +A+LH KRFL+KYG DV ++S  +  IK Q I LL A+++L+VPLI +N   ++++ + G
Sbjct:    3 SLWNLIKAVLLFVNALAILHEKRFLKKYGWDVVDASYGSNPIKNQCISLLQAVRWLRVPLIFVNFIFIVIDAITG 77          
BLAST of NO16G02620 vs. NCBI_GenBank
Match: XP_022841286.1 (Yos1-like [Ostreococcus tauri] >CEG01983.1 Yos1-like [Ostreococcus tauri])

HSP 1 Score: 73.2 bits (178), Expect = 4.100e-10
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 0
Query:    4 TLWSLYKSGLLFINGVAVLHRKRFLRKYGLDVAE----SSDATSIKTQIIGLLNAIQYLKVPLITLNIATVMVELLFG 78
            TLW+L +S LL +N VAVL+ +RFL K GL +      S+ ATS + QIIG++NA  YL+VPLI LN   + V+++FG
Sbjct:    2 TLWTLTQSALLSVNAVAVLNERRFLAKRGLTMESIRDGSTSATSARGQIIGVINAASYLRVPLIALNAIVIFVKVVFG 79          
BLAST of NO16G02620 vs. NCBI_GenBank
Match: OQR88214.1 (hypothetical protein ACHHYP_07054 [Achlya hypogyna])

HSP 1 Score: 73.2 bits (178), Expect = 4.100e-10
Identity = 33/75 (44.00%), Postives = 52/75 (69.33%), Query Frame = 0
Query:    5 LWSLYKSGLLFINGVAVLHRKRFLRKYGLDVAESSDAT--SIKTQIIGLLNAIQYLKVPLITLNIATVMVELLFG 78
            +W L  S LL +N +A+LH KRFLR+YG    E ++ +  ++K Q++G L A+QYL++PL+ +NI  + +ELL G
Sbjct:    4 IWKLIMSSLLSVNALAILHEKRFLRRYGYHQLEPNEGSTPTMKNQVVGFLVAVQYLRMPLVVINIVAIFLELLMG 78          
BLAST of NO16G02620 vs. NCBI_GenBank
Match: CBJ30492.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.8 bits (177), Expect = 5.400e-10
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 0
Query:    5 LWSLYKSGLLFINGVAVLHRKRFLRKYGLD-VAESSDATSIKTQIIGLLNAIQYLKVPLITLNIATVMVELL 76
            LW L+K+GLL  N V +LH++RFLRKY LD V  S  A+++K Q++GL+ A+ YL+ PLI LN  T ++ +L
Sbjct:    8 LWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 79          
BLAST of NO16G02620 vs. NCBI_GenBank
Match: XP_014218203.1 (immediate early response 3-interacting protein 1 [Copidosoma floridanum])

HSP 1 Score: 72.8 bits (177), Expect = 5.400e-10
Identity = 37/82 (45.12%), Postives = 58/82 (70.73%), Query Frame = 0
Query:    1 MAFTLWSLYKSGLLFINGVAVLHRKRFLRKYG----LDVAESSDATSIKTQIIGLLNAIQ-YLKVPLITLNIATVMVELLFG 78
            MAFTLWSLY++ +L +N V +LH +RFLRKYG     +V    +  S+K+Q++ LL +I+  +++PLI  NI T+ ++L+FG
Sbjct:    1 MAFTLWSLYEATILVLNAVCILHEERFLRKYGWGANQNVQGFGEPPSVKSQLMHLLRSIRTVVRIPLIFFNIVTIFIKLIFG 82          
BLAST of NO16G02620 vs. NCBI_GenBank
Match: XP_005650679.1 (Yos1-like protein [Coccomyxa subellipsoidea C-169] >EIE26135.1 Yos1-like protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 72.8 bits (177), Expect = 5.400e-10
Identity = 37/81 (45.68%), Postives = 57/81 (70.37%), Query Frame = 0
Query:    4 TLWSLYKSGLLFINGVAVLHRKRFLRKYGLDVAESSDAT-------SIKTQIIGLLNAIQYLKVPLITLNIATVMVELLFG 78
            +LW+L ++ LLF+NG+A+L+ +RFL KYG   ++ S  +       +IK Q IGLL+A+ YL+VPLI +N   ++V+LLFG
Sbjct:    2 SLWTLLQAVLLFVNGLAILNNERFLEKYGWGFSQMSGNSGIGPGPGAIKQQTIGLLHAVAYLRVPLIAVNALVILVKLLFG 82          
The following BLAST results are available for this feature:
BLAST of NO16G02620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853781.14.400e-2882.05hypothetical protein NGA_0459200 [Nannochloropsis ... [more]
XP_012206288.11.700e-1148.00hypothetical protein SPRG_11844 [Saprolegnia paras... [more]
GAX99184.12.900e-1147.95Hypothetical protein PINS_007043 [Pythium insidios... [more]
XP_008608353.13.700e-1146.67hypothetical protein SDRG_04456 [Saprolegnia dicli... [more]
OAO13212.13.200e-1046.67Yos1-like protein [Blastocystis sp. ATCC 50177/Nan... [more]
XP_022841286.14.100e-1050.00Yos1-like [Ostreococcus tauri] >CEG01983.1 Yos1-li... [more]
OQR88214.14.100e-1044.00hypothetical protein ACHHYP_07054 [Achlya hypogyna... [more]
CBJ30492.15.400e-1050.00conserved unknown protein [Ectocarpus siliculosus][more]
XP_014218203.15.400e-1045.12immediate early response 3-interacting protein 1 [... [more]
XP_005650679.15.400e-1045.68Yos1-like protein [Coccomyxa subellipsoidea C-169]... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL151nonsL151Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003269NSK003269Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02620.1NO16G02620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593963gene_6158Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02620.1NO16G02620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02620 ID=NO16G02620|Name=NO16G02620|organism=Nannochloropsis oceanica|type=gene|length=686bp
ATGGCTTTCACGCTTTGGAGTCTCTATAAGTCCGGTTTGCTCTTCATCAA
TGGCGTGGCTGTCCTGCACCGCAAGCGCTTCCTTCGGAAATgtacgtttg
gtgagggcatgacccagtcatcgccatgctatatcccttctctccttccc
tccctccttcaaaccccgtgactacctggggcacgcgcttatgaagagac
acgccagatggagcacttccgtgcacgtaaggaccacagtatggtggcga
tcgtctgtccgcaccgtcaactatcacttttcctgttttccccgtcacca
cggtcctcacgttctctgtccccacccccctcctcactcgtcttcaaatc
ccacagACGGACTAGACGTGGCAGAGAGTTCAGACGCCACCTCCATCAAG
ACGCAGATAATTGGCTTGCTCAATGCCATCCAGTATTTGAAAGgtgcgca
gtcgaaggagggagggagaggagaggaaacttccccaaatgaagcaccac
acttggggctcggtggctgtgtttgcaagcaaaataatccaccgcaccgg
atacggagatcacgaagtctaaagctttcgtctgcctgtctcttttccct
ttcttccctccccacttcacccaacagTTCCCCTGATTACCCTGAACATC
GCCACGGTCATGGTCGAGCTTCTCTTTGGCGGCTAA
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protein sequence of NO16G02620.1

>NO16G02620.1-protein ID=NO16G02620.1-protein|Name=NO16G02620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MAFTLWSLYKSGLLFINGVAVLHRKRFLRKYGLDVAESSDATSIKTQIIG
LLNAIQYLKVPLITLNIATVMVELLFGG*
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Synonyms
Publications