NO16G02620.1, NO16G02620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02620.1
Unique NameNO16G02620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length237
Alignment locationchr16:754647..755332 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:754647..755332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02620.1 vs.
Match: XP_005853781.1 (hypothetical protein NGA_0459200 [Nannochloropsis gaditana CCMP526]; EKU22581.1 hypothetical protein NGA_0459200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 132.9 bits (333), Expect = 4.400e-28
Identity = 64/78 (82.05%), Postives = 72/78 (92.31%), Query Frame = 0 
Query:    1 MAFTLWSLYKSGLLFINGVAVLHRKRFLRKYGLDVAESSDATSIKTQIIGLLNAIQYLKVPLITLNIATVMVELLFGG 79
            MAFT+WSLYKSGLLF NGVAVLHRKRFLRKYGLDVAE +D TSI+ Q++GLLNA+QYLKVPLI LNI TV++ELLFGG
Sbjct:    1 MAFTIWSLYKSGLLFTNGVAVLHRKRFLRKYGLDVAEVADTTSIRNQVVGLLNAVQYLKVPLIALNIVTVVIELLFGG 78
The following BLAST results are available for this feature:
BLAST of NO16G02620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853781.14.400e-2882.05hypothetical protein NGA_0459200 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02620NO16G02620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02620.1NO16G02620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02620.1.cds1NO16G02620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02620.1.cds2NO16G02620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02620.1.cds3NO16G02620.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02620.1 ID=NO16G02620.1|Name=NO16G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=237bp
ATGGCTTTCACGCTTTGGAGTCTCTATAAGTCCGGTTTGCTCTTCATCAA
TGGCGTGGCTGTCCTGCACCGCAAGCGCTTCCTTCGGAAATACGGACTAG
ACGTGGCAGAGAGTTCAGACGCCACCTCCATCAAGACGCAGATAATTGGC
TTGCTCAATGCCATCCAGTATTTGAAAGTTCCCCTGATTACCCTGAACAT
CGCCACGGTCATGGTCGAGCTTCTCTTTGGCGGCTAA
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protein sequence of NO16G02620.1

>NO16G02620.1-protein ID=NO16G02620.1-protein|Name=NO16G02620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MAFTLWSLYKSGLLFINGVAVLHRKRFLRKYGLDVAESSDATSIKTQIIG
LLNAIQYLKVPLITLNIATVMVELLFGG*
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mRNA from alignment at chr16:754647..755332-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02620.1 ID=NO16G02620.1|Name=NO16G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=686bp|location=Sequence derived from alignment at chr16:754647..755332- (Nannochloropsis oceanica)
ATGGCTTTCACGCTTTGGAGTCTCTATAAGTCCGGTTTGCTCTTCATCAA
TGGCGTGGCTGTCCTGCACCGCAAGCGCTTCCTTCGGAAATGTACGTTTG
GTGAGGGCATGACCCAGTCATCGCCATGCTATATCCCTTCTCTCCTTCCC
TCCCTCCTTCAAACCCCGTGACTACCTGGGGCACGCGCTTATGAAGAGAC
ACGCCAGATGGAGCACTTCCGTGCACGTAAGGACCACAGTATGGTGGCGA
TCGTCTGTCCGCACCGTCAACTATCACTTTTCCTGTTTTCCCCGTCACCA
CGGTCCTCACGTTCTCTGTCCCCACCCCCCTCCTCACTCGTCTTCAAATC
CCACAGACGGACTAGACGTGGCAGAGAGTTCAGACGCCACCTCCATCAAG
ACGCAGATAATTGGCTTGCTCAATGCCATCCAGTATTTGAAAGGTGCGCA
GTCGAAGGAGGGAGGGAGAGGAGAGGAAACTTCCCCAAATGAAGCACCAC
ACTTGGGGCTCGGTGGCTGTGTTTGCAAGCAAAATAATCCACCGCACCGG
ATACGGAGATCACGAAGTCTAAAGCTTTCGTCTGCCTGTCTCTTTTCCCT
TTCTTCCCTCCCCACTTCACCCAACAGTTCCCCTGATTACCCTGAACATC
GCCACGGTCATGGTCGAGCTTCTCTTTGGCGGCTAA
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Coding sequence (CDS) from alignment at chr16:754647..755332-

>NO16G02620.1 ID=NO16G02620.1|Name=NO16G02620.1|organism=Nannochloropsis oceanica|type=CDS|length=237bp|location=Sequence derived from alignment at chr16:754647..755332- (Nannochloropsis oceanica)
ATGGCTTTCACGCTTTGGAGTCTCTATAAGTCCGGTTTGCTCTTCATCAA
TGGCGTGGCTGTCCTGCACCGCAAGCGCTTCCTTCGGAAATACGGACTAG
ACGTGGCAGAGAGTTCAGACGCCACCTCCATCAAGACGCAGATAATTGGC
TTGCTCAATGCCATCCAGTATTTGAAAGTTCCCCTGATTACCCTGAACAT
CGCCACGGTCATGGTCGAGCTTCTCTTTGGCGGCTAA
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Synonyms
Publications