NO16G02510, NO16G02510 (gene) Nannochloropsis oceanica

Overview
NameNO16G02510
Unique NameNO16G02510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1438
Alignment locationchr16:723983..725420 -

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Properties
Property NameValue
DescriptionMad2 mitotic arrest deficient-like 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:723983..725420 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036570HORMA_dom_sf
IPR003511HORMA_DNA-bd
Homology
BLAST of NO16G02510 vs. NCBI_GenBank
Match: EWM23863.1 (mad2 mitotic arrest deficient-like 2 [Nannochloropsis gaditana])

HSP 1 Score: 217.2 bits (552), Expect = 5.200e-53
Identity = 105/135 (77.78%), Postives = 119/135 (88.15%), Query Frame = 0
Query:    8 MKQDDPLQEATAVLLEFLEVAVHQVLYNRGVYPSAVFERRRKYDVPVFMSRHPDLNLYIHEVMQAAGGMLMEGSIDKIVLTLYGSSNNDAPQTPLESFAFELLSSPLLIQALAEGSLEDPFPAFRKVLARISIAE 143
            MK + PLQEATAVLLEFLEVAVHQVLYNRGVYP A+FERRRKYDVPVFMSRHPDLNLYIHEV+ AAG M MEGS+DK+++TLYGS ++     PLESFAFEL SSP LI+ALA G L+DPFPAFRK+LAR+S+AE
Sbjct:    1 MKNNGPLQEATAVLLEFLEVAVHQVLYNRGVYPPAIFERRRKYDVPVFMSRHPDLNLYIHEVLHAAGAMFMEGSVDKVIVTLYGSRSDQEGHAPLESFAFELASSPTLIRALAVGGLDDPFPAFRKLLARLSVAE 135          
BLAST of NO16G02510 vs. NCBI_GenBank
Match: XP_005855085.1 (mad2 mitotic arrest deficient-like 2, partial [Nannochloropsis gaditana CCMP526] >EKU21269.1 mad2 mitotic arrest deficient-like 2, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 159.1 bits (401), Expect = 1.700e-35
Identity = 76/106 (71.70%), Postives = 91/106 (85.85%), Query Frame = 0
Query:   56 MSRHPDLNLYIHEVMQAAGGMLMEGSIDKIVLTLYGSSNNDAPQTPLESFAFELLSSPLLIQALAEGSLEDPFPAFRKVLARISIAEEVAELAPVPHDVTFAILLA 162
            MSRHPDLNLYIHEV+ AAG M MEGS+DK+++TLYGS ++     PLESFAFEL SSP LI+ALA G L+DPFPAFRK+LAR+S+AEEVAEL P+P DVTFA+LL+
Sbjct:    1 MSRHPDLNLYIHEVLHAAGAMFMEGSVDKVIVTLYGSRSDQEGHAPLESFAFELASSPTLIRALAVGGLDDPFPAFRKLLARLSVAEEVAELQPLPSDVTFALLLS 106          
BLAST of NO16G02510 vs. NCBI_GenBank
Match: XP_002587399.1 (hypothetical protein BRAFLDRAFT_127902 [Branchiostoma floridae] >EEN43410.1 hypothetical protein BRAFLDRAFT_127902 [Branchiostoma floridae])

HSP 1 Score: 102.4 bits (254), Expect = 1.900e-18
Identity = 58/155 (37.42%), Postives = 92/155 (59.35%), Query Frame = 0
Query:    4 STATMKQDDPLQEATAVLLEFLEVAVHQVLYNRGVYPSAVFERRRKYDVPVFMSRHPDLNLYIHEVMQAAGGMLMEGSIDKIVLTLYGSSNNDAPQTPLESFAFELLSSPLLIQALAEGSLEDPFPAFRKVLARISIAEEVAELAPVPHDVTFAI 159
            S++T +  +  Q A  ++ EFLEVA HQ+LY R VYP+ +F+RRRKY++PV MS HPD+N Y+ + +Q    ++  G +DK+VL +      D   +PLE F FE ++ P+      +  L     A R  + +I++ + +  L  +P DVTF+I
Sbjct:    3 SSSTHQDINVAQIAADIVCEFLEVAFHQILYIRQVYPAGIFQRRRKYNIPVQMSCHPDVNQYLQDTLQTIRPLVGRGEVDKVVLNI-----TDKQASPLERFVFE-VAPPVQPSVSDDSYLIRLEQALRAFVLKINVCDSM--LDTLPQDVTFSI 149          
BLAST of NO16G02510 vs. NCBI_GenBank
Match: XP_001630681.1 (predicted protein [Nematostella vectensis] >EDO38618.1 predicted protein [Nematostella vectensis])

HSP 1 Score: 99.4 bits (246), Expect = 1.600e-17
Identity = 63/157 (40.13%), Postives = 92/157 (58.60%), Query Frame = 0
Query:    8 MKQDDPLQEATA----VLLEFLEVAVHQVLYNRGVYPSAVFERRRKYDVPVFMSRHPDLNLYIHEVMQAAGGMLMEGSIDKIVLTLYGSSNNDAPQTPLESFAFELLSSPLLIQALAEGSLEDPFPAFRKVLARISIAEEVAELAPVPHDVTFAILL 161
            M + +  Q+A A    VL EFLE A H +LY R VYP A+FERR+KY+VPV MS HP+LN YI +V+Q    ++ +G + KI L +     +D    P+E F+FE+  S L +   ++  L +   A R  L +IS+ +  A L   P D TF++L+
Sbjct:    1 MDEKNDTQKARAVSADVLCEFLEAAFHLILYIREVYPPAIFERRKKYNVPVQMSCHPELNSYIQDVLQTIKPLIEKGEVQKISLVI-----SDKEYHPIERFSFEIGCSTLSLS--SDNLLLNTESALRGFLLKISVCD--ALLKANPPDCTFSVLV 148          
BLAST of NO16G02510 vs. NCBI_GenBank
Match: KII94124.1 (hypothetical protein PLICRDRAFT_50110 [Plicaturopsis crispa FD-325 SS-3])

HSP 1 Score: 98.6 bits (244), Expect = 2.700e-17
Identity = 53/151 (35.10%), Postives = 84/151 (55.63%), Query Frame = 0
Query:   16 EATAVLLEFLEVAVHQVLYNRGVYPSAVFERRRKYDVPVFMSRHPDLNLYIHEVMQAAGGMLMEGSIDKIVLTLYGSSNNDAPQTPLESFAFELLSSPLLIQALAEGSLEDPFPA------FRKVLARISIAEEVAELAPVPHDVTFAILL 161
            +    + EF+EVA+H +LY R +YP+ +F RR+KYD PVF SRHP LN YI   ++A G  L  G++DK+V+ +      D  Q PLE F F + +   +     + S++D  P+      FR  L ++++ E       +  D +FA+L+
Sbjct:   12 QTAQAITEFIEVAIHTILYVRQIYPADLFVRRKKYDTPVFQSRHPALNEYISGAVKAVGAELALGNVDKVVVLI-----KDKEQVPLERFIFAIQTMIRVESYNKDTSVQDAMPSNSLQQYFRSFLIKLNMIESQLGQMQLGEDASFAVLI 157          
BLAST of NO16G02510 vs. NCBI_GenBank
Match: XP_009065634.1 (hypothetical protein LOTGIDRAFT_197057 [Lottia gigantea] >ESO83602.1 hypothetical protein LOTGIDRAFT_197057 [Lottia gigantea])

HSP 1 Score: 97.8 bits (242), Expect = 4.600e-17
Identity = 52/144 (36.11%), Postives = 88/144 (61.11%), Query Frame = 0
Query:   15 QEATAVLLEFLEVAVHQVLYNRGVYPSAVFERRRKYDVPVFMSRHPDLNLYIHEVMQAAGGMLMEGSIDKIVLTLYGSSNNDAPQTPLESFAFELLSSPLLIQALAEGSLEDPFPAFRKVLARISIAEEVAELAPVPHDVTFAI 159
            Q +  +L EFLEVA+H +LYNR +YP  VF+RR+KY+VP+ +  HPD+ +YI  ++++   +L  G I+KIV+ +  S N     TPLE F+FE+  + +     ++  L +   + R  L ++++ +  A L P+P D T+ +
Sbjct:    8 QVSADILSEFLEVAIHGILYNRSLYPHGVFQRRKKYNVPIQVCLHPDVTIYISRIVESCKILLETGEIEKIVIIILSSDN----FTPLERFSFEIAHN-VSHNKTSDEYLFEMEASLRSFLLKLTVCD--AMLKPLPEDCTWTV 144          
BLAST of NO16G02510 vs. NCBI_GenBank
Match: XP_020315189.1 (mitotic spindle assembly checkpoint protein MAD2B [Oncorhynchus kisutch] >XP_024240263.1 mitotic spindle assembly checkpoint protein MAD2B [Oncorhynchus tshawytscha])

HSP 1 Score: 97.8 bits (242), Expect = 4.600e-17
Identity = 58/160 (36.25%), Postives = 89/160 (55.62%), Query Frame = 0
Query:    2 QHSTATMKQDDPLQEATA-VLLEFLEVAVHQVLYNRGVYPSAVFERRRKYDVPVFMSRHPDLNLYIHEVMQAAGGMLMEGSIDKIVLTLYGSSNNDAPQTPLESFAFELLSSPLLIQALAEGSLEDPFPAFRKVLARISIAEEVAELAPVPHDVTFAILL 161
            Q  T   +QD    +  A +L EFLEVA+H +LY R VYPS +F++R+KY+VPV MS HP+LN YIH+ +     ++ +   +K+V+ +      D    P+E F FE +S P L+   ++  L       R V+ +IS+ + V E    P   TF +L+
Sbjct:   64 QKMTTLTRQDLNFGQVVADILCEFLEVAIHLILYVREVYPSGIFQKRKKYNVPVQMSCHPELNQYIHDTLHCVKPLIEKNDAEKVVVVIM-----DKEHHPVERFVFE-ISQPPLLSISSDTLLSHVEQLLRAVILKISVCDAVLE--NNPPGCTFTVLV 215          
BLAST of NO16G02510 vs. NCBI_GenBank
Match: XP_021421989.1 (mitotic spindle assembly checkpoint protein MAD2B [Oncorhynchus mykiss])

HSP 1 Score: 97.8 bits (242), Expect = 4.600e-17
Identity = 58/160 (36.25%), Postives = 89/160 (55.62%), Query Frame = 0
Query:    2 QHSTATMKQDDPLQEATA-VLLEFLEVAVHQVLYNRGVYPSAVFERRRKYDVPVFMSRHPDLNLYIHEVMQAAGGMLMEGSIDKIVLTLYGSSNNDAPQTPLESFAFELLSSPLLIQALAEGSLEDPFPAFRKVLARISIAEEVAELAPVPHDVTFAILL 161
            Q  T   +QD    +  A +L EFLEVA+H +LY R VYPS +F++R+KY+VPV MS HP+LN YIH+ +     ++ +   +K+V+ +      D    P+E F FE +S P L+   ++  L       R V+ +IS+ + V E    P   TF +L+
Sbjct:   64 QKMTTLTRQDLNFGQVVADILCEFLEVAIHLILYVREVYPSGIFQKRKKYNVPVQMSCHPELNQYIHDTLHCVKPLIEKNDAEKVVVVIM-----DKEHHPVERFVFE-ISQPPLLSISSDTLLSHVEQLLRAVILKISVCDAVLE--NNPPGCTFTVLV 215          
BLAST of NO16G02510 vs. NCBI_GenBank
Match: XP_020617663.1 (mitotic spindle assembly checkpoint protein MAD2B-like isoform X1 [Orbicella faveolata])

HSP 1 Score: 97.1 bits (240), Expect = 7.900e-17
Identity = 65/165 (39.39%), Postives = 92/165 (55.76%), Query Frame = 0
Query:    1 MQHSTATMKQDDPLQEATAVLLEFLEVAVHQVLYNRGVYPSAVFERRRKYDVPVFMSRHPDLNLYIHEVMQAAGGMLMEGSIDKIVLTLYGSSNNDAPQTPLESFAFELLSSPLLIQALAEGSLEDPF-----PAFRKVLARISIAEEVAELAPVPHDVTFAILL 161
            MQ +    +  D L  +  VL EFLEVA H +LY R VYP  VFERR+KY+VPV M  HPDLN YI +V+Q A  +L +G + ++VL +     ++    P+E F FE + +P   + L+    ED F        R  L +I+  +  A L P+P   TF+IL+
Sbjct:    1 MQRAEGDKQTVDLLAVSGGVLCEFLEVAFHLILYVREVYPPVVFERRKKYNVPVQMCCHPDLNQYILDVLQTAKPLLEKGEVQRVVLVV-----SNKKFIPIERFVFE-IGNP---EELSATGSEDNFLLHTEKTLRGFLLKINACD--ALLEPIPPGCTFSILV 154          
BLAST of NO16G02510 vs. NCBI_GenBank
Match: CDQ89254.1 (unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 96.7 bits (239), Expect = 1.000e-16
Identity = 57/157 (36.31%), Postives = 88/157 (56.05%), Query Frame = 0
Query:    5 TATMKQDDPLQEATA-VLLEFLEVAVHQVLYNRGVYPSAVFERRRKYDVPVFMSRHPDLNLYIHEVMQAAGGMLMEGSIDKIVLTLYGSSNNDAPQTPLESFAFELLSSPLLIQALAEGSLEDPFPAFRKVLARISIAEEVAELAPVPHDVTFAILL 161
            T   +QD    +  A +L EFLEVA+H +LY R VYPS +F++R+KY+VPV MS HP+LN YIH+ +     ++ +   +K+V+ +      D    P+E F FE +S P L+   ++  L       R V+ +IS+ + V E    P   TF +L+
Sbjct:    2 TTLTRQDLNFGQVVADILCEFLEVAIHLILYVREVYPSGIFQKRKKYNVPVQMSCHPELNQYIHDTLHCVKPLIEKNDAEKVVVVIM-----DKEHHPVERFVFE-ISQPPLLSISSDTLLSHVEQLLRAVILKISVCDAVLE--NNPPGCTFTVLV 150          
The following BLAST results are available for this feature:
BLAST of NO16G02510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23863.15.200e-5377.78mad2 mitotic arrest deficient-like 2 [Nannochlorop... [more]
XP_005855085.11.700e-3571.70mad2 mitotic arrest deficient-like 2, partial [Nan... [more]
XP_002587399.11.900e-1837.42hypothetical protein BRAFLDRAFT_127902 [Branchiost... [more]
XP_001630681.11.600e-1740.13predicted protein [Nematostella vectensis] >EDO386... [more]
KII94124.12.700e-1735.10hypothetical protein PLICRDRAFT_50110 [Plicaturops... [more]
XP_009065634.14.600e-1736.11hypothetical protein LOTGIDRAFT_197057 [Lottia gig... [more]
XP_020315189.14.600e-1736.25mitotic spindle assembly checkpoint protein MAD2B ... [more]
XP_021421989.14.600e-1736.25mitotic spindle assembly checkpoint protein MAD2B ... [more]
XP_020617663.17.900e-1739.39mitotic spindle assembly checkpoint protein MAD2B-... [more]
CDQ89254.11.000e-1636.31unnamed protein product [Oncorhynchus mykiss][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL151nonsL151Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02510.1NO16G02510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|82830gene_6146Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100202g9gene6592Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02510.1NO16G02510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02510 ID=NO16G02510|Name=NO16G02510|organism=Nannochloropsis oceanica|type=gene|length=1438bp
ACATGTCACCCACCTCCGCCACCTTCGCCTCCCTCCCATTCTCATCCCTT
TCTCGTAATCCCCAATTACACACACATGCAACACAGCACGGCGACCATGA
AGCAAGACGATCCCTTGCAGGAGGCGACGGCGGTGCTACTAGAGTTCCTG
GAGGTAGCCGTCCACCAAGTCTTgtaagtttgtccttgacttttcgattc
cacgtctaccactgcttgcttatcttcatttccgattgaataaacataag
agaaggtttcaataccgagcagttctctcttaccctcagccctccataac
attgcatttcacctcctttccatttccccctccctctttctacccttgct
tcctccttccgcagGTACAACCGCGGCGTCTACCCCTCCGCCGTCTTTGA
ACGCCGGCGGAAATATGACGTGCCCGTTTTCATGAGTCGTCACCCGGACC
TAAATCTGTACATACACGAGGTGATGCAAGCTGCGGGAGGCATGTTGATG
GAGGGATCGATCGATAAGATTGTCTTGACGCTGTATGGGAGCAGgtaggg
aggtaggaggaaggtgtacaacgacagcgctagaagagggtccgtaggat
ccgacacagacacgcacatacacaggcacacacgctcacacacaaaatca
cacagCAACAATGACGCCCCCCAAACCCCCCTGGAGTCTTTCGCCTTTGA
GCTGCTCTCTTCCCCCTTACTCATTCAAGCCTTGGCGGAAGGCAGTCTGG
AAGACCCCTTTCCGGCGTTTCGGAAGGTGCTAGCCCGCATCAGCATCGCC
GAGgtaagtggccctctttttacggagtggcgtgtacattatttctgggc
tcatcttctccactcctatctccctttctccctccctcccagGAAGTCGC
TGAGCTAGCACCCGTCCCCCATGACGTGACGTTCGCCATCCTCCTGGCTA
CACGTCCTCACCATCAGCAGCAGCAGCAACAACAACAACGACGACAAGCG
AATGGTGGGAAAGAGGGAGGACAGGAAGGAGTGGGGCTGGAGGTGCCTCC
TGCATGGACAGCAGCTATTAGCTCGGGGGAATTCGCGCCAGGGGGCCCCG
AAAGTTATCTGGCGACGACGATAGAAGGAAAGGGGGGGGGGGGGAGGAAG
GTACGGCATACCTGAATTTGGTGAATTGGGAGAATTTCAGTGGAGGAAGA
AGAGGAGGAGAGGATAGCGGAAGGTGTGCGCCGCACATGCGGGTCGTGGT
TCGAAGTCGGTTGCATACCTAGCCGCCGCCGATGGCACGAGGGCTGTGAC
AGGAGAAGAAGGAGGTTTAGACAAGAGCACCACGGCCAGGTACCCCAAGG
TGTCGCGGTTGCTGGAGGTGCTGGGAATGTGCACAAAAAATATGTTGTAA
AAATATTAGGCGAAAGGACGCTACCAACAACTCAAACG
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protein sequence of NO16G02510.1

>NO16G02510.1-protein ID=NO16G02510.1-protein|Name=NO16G02510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MQHSTATMKQDDPLQEATAVLLEFLEVAVHQVLYNRGVYPSAVFERRRKY
DVPVFMSRHPDLNLYIHEVMQAAGGMLMEGSIDKIVLTLYGSSNNDAPQT
PLESFAFELLSSPLLIQALAEGSLEDPFPAFRKVLARISIAEEVAELAPV
PHDVTFAILLATRPHHQQQQQQQQRRQANGGKEGGQEGVGLEVPPAWTAA
ISSGEFAPGGPESYLATTIEGKGGGGRKVRHT*
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Synonyms
Publications