NO16G02510.1, NO16G02510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02510.1
Unique NameNO16G02510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1047
Alignment locationchr16:723983..725420 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:723983..725420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02510.1 vs.
Match: EWM23863.1 (mad2 mitotic arrest deficient-like 2 [Nannochloropsis gaditana])

HSP 1 Score: 217.2 bits (552), Expect = 5.200e-53
Identity = 105/135 (77.78%), Postives = 119/135 (88.15%), Query Frame = 0 
Query:    8 MKQDDPLQEATAVLLEFLEVAVHQVLYNRGVYPSAVFERRRKYDVPVFMSRHPDLNLYIHEVMQAAGGMLMEGSIDKIVLTLYGSSNNDAPQTPLESFAFELLSSPLLIQALAEGSLEDPFPAFRKVLARISIAE 143
            MK + PLQEATAVLLEFLEVAVHQVLYNRGVYP A+FERRRKYDVPVFMSRHPDLNLYIHEV+ AAG M MEGS+DK+++TLYGS ++     PLESFAFEL SSP LI+ALA G L+DPFPAFRK+LAR+S+AE
Sbjct:    1 MKNNGPLQEATAVLLEFLEVAVHQVLYNRGVYPPAIFERRRKYDVPVFMSRHPDLNLYIHEVLHAAGAMFMEGSVDKVIVTLYGSRSDQEGHAPLESFAFELASSPTLIRALAVGGLDDPFPAFRKLLARLSVAE 135
The following BLAST results are available for this feature:
BLAST of NO16G02510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23863.15.200e-5377.78mad2 mitotic arrest deficient-like 2 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02510NO16G02510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02510.1NO16G02510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02510.1.cds1NO16G02510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02510.1.cds2NO16G02510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02510.1.cds3NO16G02510.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02510.1.cds4NO16G02510.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02510.1 ID=NO16G02510.1|Name=NO16G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1047bp
ACATGTCACCCACCTCCGCCACCTTCGCCTCCCTCCCATTCTCATCCCTT
TCTCGTAATCCCCAATTACACACACATGCAACACAGCACGGCGACCATGA
AGCAAGACGATCCCTTGCAGGAGGCGACGGCGGTGCTACTAGAGTTCCTG
GAGGTAGCCGTCCACCAAGTCTTGTACAACCGCGGCGTCTACCCCTCCGC
CGTCTTTGAACGCCGGCGGAAATATGACGTGCCCGTTTTCATGAGTCGTC
ACCCGGACCTAAATCTGTACATACACGAGGTGATGCAAGCTGCGGGAGGC
ATGTTGATGGAGGGATCGATCGATAAGATTGTCTTGACGCTGTATGGGAG
CAGCAACAATGACGCCCCCCAAACCCCCCTGGAGTCTTTCGCCTTTGAGC
TGCTCTCTTCCCCCTTACTCATTCAAGCCTTGGCGGAAGGCAGTCTGGAA
GACCCCTTTCCGGCGTTTCGGAAGGTGCTAGCCCGCATCAGCATCGCCGA
GGAAGTCGCTGAGCTAGCACCCGTCCCCCATGACGTGACGTTCGCCATCC
TCCTGGCTACACGTCCTCACCATCAGCAGCAGCAGCAACAACAACAACGA
CGACAAGCGAATGGTGGGAAAGAGGGAGGACAGGAAGGAGTGGGGCTGGA
GGTGCCTCCTGCATGGACAGCAGCTATTAGCTCGGGGGAATTCGCGCCAG
GGGGCCCCGAAAGTTATCTGGCGACGACGATAGAAGGAAAGGGGGGGGGG
GGGAGGAAGGTACGGCATACCTGAATTTGGTGAATTGGGAGAATTTCAGT
GGAGGAAGAAGAGGAGGAGAGGATAGCGGAAGGTGTGCGCCGCACATGCG
GGTCGTGGTTCGAAGTCGGTTGCATACCTAGCCGCCGCCGATGGCACGAG
GGCTGTGACAGGAGAAGAAGGAGGTTTAGACAAGAGCACCACGGCCAGGT
ACCCCAAGGTGTCGCGGTTGCTGGAGGTGCTGGGAATGTGCACAAAAAAT
ATGTTGTAAAAATATTAGGCGAAAGGACGCTACCAACAACTCAAACG
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protein sequence of NO16G02510.1

>NO16G02510.1-protein ID=NO16G02510.1-protein|Name=NO16G02510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MQHSTATMKQDDPLQEATAVLLEFLEVAVHQVLYNRGVYPSAVFERRRKY
DVPVFMSRHPDLNLYIHEVMQAAGGMLMEGSIDKIVLTLYGSSNNDAPQT
PLESFAFELLSSPLLIQALAEGSLEDPFPAFRKVLARISIAEEVAELAPV
PHDVTFAILLATRPHHQQQQQQQQRRQANGGKEGGQEGVGLEVPPAWTAA
ISSGEFAPGGPESYLATTIEGKGGGGRKVRHT*
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mRNA from alignment at chr16:723983..725420-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02510.1 ID=NO16G02510.1|Name=NO16G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1438bp|location=Sequence derived from alignment at chr16:723983..725420- (Nannochloropsis oceanica)
ACATGTCACCCACCTCCGCCACCTTCGCCTCCCTCCCATTCTCATCCCTT
TCTCGTAATCCCCAATTACACACACATGCAACACAGCACGGCGACCATGA
AGCAAGACGATCCCTTGCAGGAGGCGACGGCGGTGCTACTAGAGTTCCTG
GAGGTAGCCGTCCACCAAGTCTTGTAAGTTTGTCCTTGACTTTTCGATTC
CACGTCTACCACTGCTTGCTTATCTTCATTTCCGATTGAATAAACATAAG
AGAAGGTTTCAATACCGAGCAGTTCTCTCTTACCCTCAGCCCTCCATAAC
ATTGCATTTCACCTCCTTTCCATTTCCCCCTCCCTCTTTCTACCCTTGCT
TCCTCCTTCCGCAGGTACAACCGCGGCGTCTACCCCTCCGCCGTCTTTGA
ACGCCGGCGGAAATATGACGTGCCCGTTTTCATGAGTCGTCACCCGGACC
TAAATCTGTACATACACGAGGTGATGCAAGCTGCGGGAGGCATGTTGATG
GAGGGATCGATCGATAAGATTGTCTTGACGCTGTATGGGAGCAGGTAGGG
AGGTAGGAGGAAGGTGTACAACGACAGCGCTAGAAGAGGGTCCGTAGGAT
CCGACACAGACACGCACATACACAGGCACACACGCTCACACACAAAATCA
CACAGCAACAATGACGCCCCCCAAACCCCCCTGGAGTCTTTCGCCTTTGA
GCTGCTCTCTTCCCCCTTACTCATTCAAGCCTTGGCGGAAGGCAGTCTGG
AAGACCCCTTTCCGGCGTTTCGGAAGGTGCTAGCCCGCATCAGCATCGCC
GAGGTAAGTGGCCCTCTTTTTACGGAGTGGCGTGTACATTATTTCTGGGC
TCATCTTCTCCACTCCTATCTCCCTTTCTCCCTCCCTCCCAGGAAGTCGC
TGAGCTAGCACCCGTCCCCCATGACGTGACGTTCGCCATCCTCCTGGCTA
CACGTCCTCACCATCAGCAGCAGCAGCAACAACAACAACGACGACAAGCG
AATGGTGGGAAAGAGGGAGGACAGGAAGGAGTGGGGCTGGAGGTGCCTCC
TGCATGGACAGCAGCTATTAGCTCGGGGGAATTCGCGCCAGGGGGCCCCG
AAAGTTATCTGGCGACGACGATAGAAGGAAAGGGGGGGGGGGGGAGGAAG
GTACGGCATACCTGAATTTGGTGAATTGGGAGAATTTCAGTGGAGGAAGA
AGAGGAGGAGAGGATAGCGGAAGGTGTGCGCCGCACATGCGGGTCGTGGT
TCGAAGTCGGTTGCATACCTAGCCGCCGCCGATGGCACGAGGGCTGTGAC
AGGAGAAGAAGGAGGTTTAGACAAGAGCACCACGGCCAGGTACCCCAAGG
TGTCGCGGTTGCTGGAGGTGCTGGGAATGTGCACAAAAAATATGTTGTAA
AAATATTAGGCGAAAGGACGCTACCAACAACTCAAACG
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Coding sequence (CDS) from alignment at chr16:723983..725420-

>NO16G02510.1 ID=NO16G02510.1|Name=NO16G02510.1|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at chr16:723983..725420- (Nannochloropsis oceanica)
ATGCAACACAGCACGGCGACCATGAAGCAAGACGATCCCTTGCAGGAGGC
GACGGCGGTGCTACTAGAGTTCCTGGAGGTAGCCGTCCACCAAGTCTTGT
ACAACCGCGGCGTCTACCCCTCCGCCGTCTTTGAACGCCGGCGGAAATAT
GACGTGCCCGTTTTCATGAGTCGTCACCCGGACCTAAATCTGTACATACA
CGAGGTGATGCAAGCTGCGGGAGGCATGTTGATGGAGGGATCGATCGATA
AGATTGTCTTGACGCTGTATGGGAGCAGCAACAATGACGCCCCCCAAACC
CCCCTGGAGTCTTTCGCCTTTGAGCTGCTCTCTTCCCCCTTACTCATTCA
AGCCTTGGCGGAAGGCAGTCTGGAAGACCCCTTTCCGGCGTTTCGGAAGG
TGCTAGCCCGCATCAGCATCGCCGAGGAAGTCGCTGAGCTAGCACCCGTC
CCCCATGACGTGACGTTCGCCATCCTCCTGGCTACACGTCCTCACCATCA
GCAGCAGCAGCAACAACAACAACGACGACAAGCGAATGGTGGGAAAGAGG
GAGGACAGGAAGGAGTGGGGCTGGAGGTGCCTCCTGCATGGACAGCAGCT
ATTAGCTCGGGGGAATTCGCGCCAGGGGGCCCCGAAAGTTATCTGGCGAC
GACGATAGAAGGAAAGGGGGGGGGGGGGAGGAAGGTACGGCATACCTGA
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Synonyms
Publications