NO16G02490, NO16G02490 (gene) Nannochloropsis oceanica

Overview
NameNO16G02490
Unique NameNO16G02490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1599
Alignment locationchr16:719177..720775 -

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Properties
Property NameValue
DescriptionAcyl-CoA-binding domain-containing protein 4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:719177..720775 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0000062fatty-acyl-CoA binding
GO:0000062fatty-acyl-CoA binding
Vocabulary: INTERPRO
TermDefinition
IPR035984Acyl-CoA-binding_sf
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
IPR000582Acyl-CoA-binding_protein
Homology
BLAST of NO16G02490 vs. NCBI_GenBank
Match: XP_005855091.1 (acyl-coenzyme a binding domain containing 6 [Nannochloropsis gaditana CCMP526] >EKU21275.1 acyl-coenzyme a binding domain containing 6 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 162.2 bits (409), Expect = 2.500e-36
Identity = 98/241 (40.66%), Postives = 129/241 (53.53%), Query Frame = 0
Query:   13 LFAHCAALVRQPPTSLGHVRLTEDQKLKLYALFKQATEGDNATTCPSLLDIVGRAKWNAWQAMAGISHADAQARYVACIQEWY-------GDGAASGMKDT--AQRDGAGRNLGRKD--DDNFSFGSSQLRALGEIGID----GCIVRRERRKXXXXXXXXXXXXXXXXXXXVFYYVKRGMVEEVLARLEKGERE-------GEPRVDIDVRDEEGRTLLHWAVDRNHRVLVELLLTRGSD 232
            LF  CA++V+ PP    HV LTE Q+L LYA +KQ  EGDN T CP LLD V RAKW AW+A+ G+    AQ+ Y+ C+Q W+       G  A+ G+K T    R  + R+    +  DD    GS+  R +G IG +    GC+   +R                     +F + K G V++VLA L+ GE E       G     +D RDEEGRTLLHWAVD NH  LV++LL RG+D
Sbjct:   12 LFFQCASIVKSPPPEFSHVTLTEKQQLHLYARYKQGYEGDNVTPCPGLLDFVARAKWKAWKALMGMDALQAQSEYIDCVQAWFKEQSPEMGCHASEGLKQTKITSRFQSHRDSRANEHVDDTLLLGSAPFRGIGVIGREGLNSGCVDSPDRTS---EEREGNKRGAANEHEDIFSWAKEGFVDKVLAWLD-GENEPAEGGAIGPLPRHVDTRDEEGRTLLHWAVDGNHGALVKILLARGAD 248          
BLAST of NO16G02490 vs. NCBI_GenBank
Match: XP_009526856.1 (hypothetical protein PHYSODRAFT_314990 [Phytophthora sojae] >EGZ17798.1 hypothetical protein PHYSODRAFT_314990 [Phytophthora sojae])

HSP 1 Score: 97.4 bits (241), Expect = 7.500e-17
Identity = 65/200 (32.50%), Postives = 101/200 (50.50%), Query Frame = 0
Query:   29 GHVRLTEDQKLKLYALFKQATEGDNATTCPSLLDIVGRAKWNAWQAMAGISHADAQARYVACIQEWYGDGAASGMKDTAQRDGAGRNLGRKDDDNFSFGSSQLRALGEIGIDGCIVRRERRKXXXXXXXXXXXXXXXXXXXVFYYVKRGMVEEVLARLEKGEREGEPRVDIDVRDEEGRTLLHWAVDRNHRVLVELLLTR 229
            G+ +LT +Q+L LYA +KQA  G  +   PS +D+VG AKW +W+A+  +S   A+ +YV  +Q+ + +    G K    R  +  +  +   +  S  SS   A G + +    +  E  K                   VF+Y   G V++++A L+ GE       DI+ +D EGRT+LHWAVDR+   +VE LL R
Sbjct:   74 GNNKLTNEQRLTLYAFYKQAHFGKCSVEKPSAVDMVGSAKWESWKALGDLSQDKAKEQYVEWVQDLFEEFDVRGPK--RWRSSSNTSSSKATSEAVSLDSSMSMA-GAVSMPKVDMSTEEWK---------------VKDDVFHYASTGDVDKLVAALDLGE-------DINAQDPEGRTMLHWAVDRDQTTIVEELLRR 248          
BLAST of NO16G02490 vs. NCBI_GenBank
Match: OQS05030.1 (acyl-CoA-binding domain-containing protein [Thraustotheca clavata])

HSP 1 Score: 93.6 bits (231), Expect = 1.100e-15
Identity = 69/213 (32.39%), Postives = 94/213 (44.13%), Query Frame = 0
Query:   14 FAHCAALVRQPPTSLGHVRLTEDQKLKLYALFKQATEGDNATTCPSLLDIVGRAKWNAWQAMAGISHADAQARYV-----ACIQEWYG----DGAASGMKDTAQRDGAGRNLGRKDDDNFSFGSSQLRAL-GEIGIDGCIVRRERRKXXXXXXXXXXXXXXXXXXXVFYYVKRGMVEEVLARLEKGEREGEPRVDIDVRDEEGRTLLHWAVDR 217
            F H AA V          RL+ + KL LYA +KQAT GD   T PS +D V +AKW+AW  + G+S  +AQ RY+      C    YG    +  A G  D    D  G         NF+ GS   + +  +   +  +V  E                       F++   G V E++  L+  +       DID +DEEGRT+LHWAVDR
Sbjct:   48 FEHAAAFVASA------ARLSTENKLVLYAFYKQATTGDCTLTKPSAIDFVAKAKWDAWMGIQGMSREEAQKRYLEIVSSVCPNYQYGCEIVEQNADGTSDEESEDDGG---------NFTIGSHTSQVIVDKTTEEWQVVENE-----------------------FHFASTGNVHEIMHMLDAHD------TDIDKQDEEGRTMLHWAVDR 216          
BLAST of NO16G02490 vs. NCBI_GenBank
Match: POM60443.1 (Acyl-CoA-binding domain containing hypothetical protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 92.8 bits (229), Expect = 1.900e-15
Identity = 60/200 (30.00%), Postives = 97/200 (48.50%), Query Frame = 0
Query:   29 GHVRLTEDQKLKLYALFKQATEGDNATTCPSLLDIVGRAKWNAWQAMAGISHADAQARYVACIQEWYGDGAASGMKDTAQRDGAGRNLGRKDDDNFSFGSSQLRALGEIGIDGCIVRRERRKXXXXXXXXXXXXXXXXXXXVFYYVKRGMVEEVLARLEKGEREGEPRVDIDVRDEEGRTLLHWAVDRNHRVLVELLLTR 229
            G+ +LT +QKL LYA +KQA  G  +   PS +D+VG AKW +W+A+  ++   A+ +YV  +Q+ + +    G K      GA  +    +  + S         G + +    +  E  K                   VF+Y   G +++++  L+ GE       DI+ +D EGRT++HWAVDR+   +VE LL R
Sbjct:   74 GNNKLTNEQKLTLYAFYKQAHFGKCSVDKPSAMDMVGSAKWESWKALGDMNIDVAKKQYVEWVQDLFEEFDVRGPKRWRSSSGASSSKATSESVSMSMA-------GAVSLPKVDMSTEEWK---------------VKDDVFHYASTGDIDKLMLALDHGE-------DINAQDPEGRTMMHWAVDRDQMTVVEELLRR 244          
BLAST of NO16G02490 vs. NCBI_GenBank
Match: PIA48888.1 (hypothetical protein AQUCO_01300054v1 [Aquilegia coerulea])

HSP 1 Score: 90.1 bits (222), Expect = 1.200e-14
Identity = 59/219 (26.94%), Postives = 100/219 (45.66%), Query Frame = 0
Query:   13 LFAHCAALVRQPPTSLGHVRLTEDQKLKLYALFKQATEGDNATTCPSLLDIVGRAKWNAWQAMAGISHADAQARYVACIQEWYGDGAASGMKDTAQRDGAGRNLGRKDDDNFSFGSSQLRALGEIGIDGCIVRRERRKXXXXXXXXXXXXXXXXXXXVFYYVKRGMVEEVLARLEKGEREGEPRVDIDVRDEEGRTLLHWAVDRNHRVLVELLLTRGSD 232
            +F+   A V    +     +++ +++L+LY  +K ATEG   T  PS L++  RAKWNAWQ +  +S  +A   Y+  + E Y   AA          G+  +  RKD D  +  S+    +G +     +   +                      +  + + G ++ +   +  GE        ++++D EGRT LHWAVDR H  +VELLL++ +D
Sbjct:  125 IFSAATAFVAASASDRLAQKVSNEKQLQLYGFYKIATEGPCNTPQPSALNMSARAKWNAWQKLGSMSPEEAMQMYIQLVCELYPSWAA----------GSAADQSRKDRDKDATSSASKSMMGPV-FSSYVYEEDSHS-------------ETKLEAIHEFAREGEIDNLHKHIGDGE-------SVNLKDSEGRTPLHWAVDRGHSDIVELLLSKNAD 312          
BLAST of NO16G02490 vs. NCBI_GenBank
Match: XP_002899463.1 (acyl-CoA-binding domain-containing protein, putative [Phytophthora infestans T30-4] >EEY61823.1 acyl-CoA-binding domain-containing protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 89.4 bits (220), Expect = 2.100e-14
Identity = 59/200 (29.50%), Postives = 100/200 (50.00%), Query Frame = 0
Query:   29 GHVRLTEDQKLKLYALFKQATEGDNATTCPSLLDIVGRAKWNAWQAMAGISHADAQARYVACIQEWYGDGAASGMKDTAQRDGAGRNLGRKDDDNFSFGSSQLRALGEIGIDGCIVRRERRKXXXXXXXXXXXXXXXXXXXVFYYVKRGMVEEVLARLEKGEREGEPRVDIDVRDEEGRTLLHWAVDRNHRVLVELLLTR 229
            G+ +LT +QKL LYA +KQA  G  +   PS +D+VG AKW +W+A+  ++   A+ +Y+  +Q+ + +    G K    R  +  +  +   +  S   S +   G + +    +  E  K                   +F+Y   G ++++LA L+ GE       +I+ +D EGRT++HWAVDR+   +VE LL R
Sbjct:   74 GNNKLTNEQKLTLYAFYKQAHFGKCSVDKPSAVDMVGSAKWESWKALGDMNQDLAKHQYLEWVQDLFEEFDVHGPK--RWRSSSSSSSPKATSEPMSLDGS-ISMAGAVSLPKVDMSTEEWK---------------VNDDIFHYASTGDLDKLLAALDHGE-------NINAQDPEGRTMMHWAVDRDQMTIVEELLRR 248          
BLAST of NO16G02490 vs. NCBI_GenBank
Match: XP_024583534.1 (acyl-binding protein [Plasmopara halstedii] >CEG47165.1 acyl-binding protein [Plasmopara halstedii])

HSP 1 Score: 88.6 bits (218), Expect = 3.500e-14
Identity = 59/203 (29.06%), Postives = 100/203 (49.26%), Query Frame = 0
Query:   26 TSLGHVRLTEDQKLKLYALFKQATEGDNATTCPSLLDIVGRAKWNAWQAMAGISHADAQARYVACIQEWYGDGAASGMKDTAQRDGAGRNLGRKDDDNFSFGSSQLRALGEIGIDGCIVRRERRKXXXXXXXXXXXXXXXXXXXVFYYVKRGMVEEVLARLEKGEREGEPRVDIDVRDEEGRTLLHWAVDRNHRVLVELLLTR 229
            T+ G+ +LT +QKL LYA +KQA+ G  +   PS++DIVG AKW +W+A+  +    A+  YV  +Q+++ +    G +       A       D      GS  L  + ++  +   V+++                      +F+Y   G +++++  L++GE       DI+ +D  GRT+LHWAVDR+   +V  LL R
Sbjct:   66 TTRGNNKLTNEQKLLLYAFYKQASFGPCSVDKPSVVDIVGIAKWQSWKALGCLKQDVAKEYYVEWVQKFFEEFDVRGPEKWGSSSEASNKSTTLDGTMGMAGSVSLPKV-DMSSEEWKVKQD----------------------IFHYASTGHLDKLIVALDQGE-------DINAQDSHGRTMLHWAVDRDQAAVVTELLGR 238          
BLAST of NO16G02490 vs. NCBI_GenBank
Match: XP_008810457.1 (PREDICTED: acyl-CoA-binding domain-containing protein 1 [Phoenix dactylifera])

HSP 1 Score: 87.8 bits (216), Expect = 6.000e-14
Identity = 63/213 (29.58%), Postives = 93/213 (43.66%), Query Frame = 0
Query:   14 FAHCAALVRQPPTSLGHVRLTEDQKLKLYALFKQATEGDNATTCPSLLDIVGRAKWNAWQAMAGISHADAQARYVACIQEWYGDGAASGMKDTAQRDGAGRNLGRKDDDNFSFGSSQLRALGEIG-IDGCIVRRERRKXXXXXXXXXXXXXXXXXXXVFYYVKRGMVEEVLARLEKGEREGEPRVDIDVRDEEGRTLLHWAVDRNHRVLVELL 226
            F+   A V          +++ D +L+LY L+K ATEG      PS L I  RAKWNAWQ +  +   DA  +Y+  + E Y   A          DG+     +K D+  +  SS   A G +G +    V  E  +                   +    + G  +++L  +E         V +++RD EGRT LHWAVDR H  +VE+L
Sbjct:  118 FSAATAFVAATAADRASAKVSSDVQLQLYGLYKIATEGPCTAPQPSALKITARAKWNAWQKLGSMDPEDAMQKYITIVSELYPSWA----------DGSAT---KKKDEGIAASSSS--AQGTMGPVFSSFVHEEESE------------TDLKLDAIHVSAREGEADDILKHIEND-------VSVNLRDSEGRTPLHWAVDRGHIRVVEIL 296          
BLAST of NO16G02490 vs. NCBI_GenBank
Match: PAN40791.1 (hypothetical protein PAHAL_G02844 [Panicum hallii] >PUZ49555.1 hypothetical protein GQ55_7G334900 [Panicum hallii var. hallii])

HSP 1 Score: 87.8 bits (216), Expect = 6.000e-14
Identity = 57/191 (29.84%), Postives = 85/191 (44.50%), Query Frame = 0
Query:   35 EDQKLKLYALFKQATEGDNATTCPSLLDIVGRAKWNAWQAMAGISHADAQARYVACIQEWYGDGAASGMKDTAQRDGAGRNLGRKDDDNFSFGSSQLRALGEIGIDGCIVRRERRKXXXXXXXXXXXXXXXXXXXVFYYVKRGMVEEVLARLEKGEREGEPRVDIDVRDEEGRTLLHWAVDRNHRVLVELL 226
            E+ +L+LY L+K ATEG      PS L +  RAKWNAW  +  +   +A   Y+  + E + + A            AG ++ RKD+D+ +  S     +G +         E  +                   +    + G  +++L  L  G       VD++VRD EGRT LHWAVDR H   VE+L
Sbjct:  116 EEAQLRLYGLYKIATEGPCTAPQPSALKLKARAKWNAWNKLGAMPTEEAMQEYITIVDELFPNWA------------AGSSMKRKDEDSMASASGSKGPMGPVFSSLMYEEDEGNE--------------AELGDIHVSAREGATDDILKHLSTG-------VDVNVRDTEGRTPLHWAVDRGHLSAVEIL 273          
BLAST of NO16G02490 vs. NCBI_GenBank
Match: XP_023771765.1 (LOW QUALITY PROTEIN: acyl-CoA-binding domain-containing protein 1 [Lactuca sativa])

HSP 1 Score: 87.4 bits (215), Expect = 7.800e-14
Identity = 61/205 (29.76%), Postives = 89/205 (43.41%), Query Frame = 0
Query:   24 PPTSLGHVRLTEDQKLKLYALFKQATEGDNATTCPSLLDIVGRAKWNAWQAMAGISHADAQARYVACIQEWYGDGAASGMKDTAQRDGAGRNLGRKDDDNFSFGSSQLRALGEIGIDGCIVRRERRKXXXXXXXXXXXXXXXXXXXVFYYVKRGMVEEVLARLEKGEREGEPRVDIDVRDEEGRTLLHWAVDRNHRVLVELLLTR 229
            P       +++ D +L+LY L+K ATEG  +   PS L +  RAKWNAWQ +  +   +A  +Y+  I E Y                AG    RKD D     S+  R +G   +   ++  E                      +  + + G  E +L  +E G       V +D++D EGRT LHWAVDR H    ELLL++
Sbjct:  122 PAADRSSPKVSTDLQLQLYGLYKIATEGPCSVPQPSALKMTARAKWNAWQKLGAMPTEEAMLKYLEIITELYPTWV------------AGSTSKRKDGDANERSSNDTRPMGP--VFSSLIHEEE-------------SDELKLDAIHAFAREGDTENLLKCVEGG-------VPVDIKDSEGRTPLHWAVDRGHIEAAELLLSK 292          
The following BLAST results are available for this feature:
BLAST of NO16G02490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855091.12.500e-3640.66acyl-coenzyme a binding domain containing 6 [Nanno... [more]
XP_009526856.17.500e-1732.50hypothetical protein PHYSODRAFT_314990 [Phytophtho... [more]
OQS05030.11.100e-1532.39acyl-CoA-binding domain-containing protein [Thraus... [more]
POM60443.11.900e-1530.00Acyl-CoA-binding domain containing hypothetical pr... [more]
PIA48888.11.200e-1426.94hypothetical protein AQUCO_01300054v1 [Aquilegia c... [more]
XP_002899463.12.100e-1429.50acyl-CoA-binding domain-containing protein, putati... [more]
XP_024583534.13.500e-1429.06acyl-binding protein [Plasmopara halstedii] >CEG47... [more]
XP_008810457.16.000e-1429.58PREDICTED: acyl-CoA-binding domain-containing prot... [more]
PAN40791.16.000e-1429.84hypothetical protein PAHAL_G02844 [Panicum hallii]... [more]
XP_023771765.17.800e-1429.76LOW QUALITY PROTEIN: acyl-CoA-binding domain-conta... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL151nonsL151Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02490.1NO16G02490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02490.1NO16G02490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02490 ID=NO16G02490|Name=NO16G02490|organism=Nannochloropsis oceanica|type=gene|length=1599bp
GTCGTTACGAAGAAGCTCGCCTGTGGTGGAGGTCAGGGAGGGTGTTGAGA
TTGAGTATTAATAGTAGAAGCATAAAGACTCCAGGAGTCAAACTAAGCAC
ATAGACGGCCCAACAGATTTCGTAACCTGGTTTATATGGTAGGTTTAAGG
AGGATGCCCGAGTGTCTAAGTGACCAGGGACAGGGCATTGCCGTCCTGCA
GTCCTCCCACCATCAAATCCCTTCTCCTCGACTCGACTCGCCTCGCGGAA
TGACACAAGCGGGTGCCAGCAAAAGTATCGGTAATAATTTAACAAGTCGA
AAGAGGTGGGCCTTCAGCCAAAGAGAAGTACACCCGACAGGATAAAGCAA
ACCAATCAGCCATGCGCGCTCTTGTCACCAACCCACAACCCACACACAGC
ACATGGACGGAGCGGATAACAAGATCAATGCCACCATGgtacgtacaacg
cacgtgtggcaacctcccccccccttcctttgctaatcccttcccttcct
tccgtcatgccttcttgcaccctctaatcatcctacccgcagCTCTTCGC
TCACTGTGCCGCCTTGGTTCGACAACCGCCCACAAGCCTGGGCCATGTCC
GATTGACGGAAGACCAGAAGCTGAAGCTCTATGCGTTGTTTAAACAGGCC
ACTGAGGGAGATAATGCAACGACGTGTCCGAGTTTGTTGGACATTGTGGG
GCGGGCAAAATGgtacgtttgtggtaatgagggggcttcaagaataggac
agtggtgcctgtgcgataatgggtttagaaggtgattgtgttgcatcacg
cgtacttgattgtgatttttggagagataagagtagcgaggaaaattatg
aagaaagaggtttttaataataaaattacgcccactcgatagGAATGCAT
GGCAAGCAATGGCAGGAATTTCACACGCCGATGCTCAAGCACGCTACGTA
GCTTGCATCCAGGAGTGGTACGGCGACGGCGCAGCCTCGGGCATGAAGGA
CACAGCGCAGCGCGACGGCGCGGGTAGAAATTTGGGCCGTAAGGACGACG
ACAATTTCTCGTTTGGCAGCAGCCAGTTGCGTGCCTTGGGGGAGATTGGG
ATCGATGGTTGCATCGTCCGCAGGGAAAGGAGGAAAGGGGAAGAAAGAGG
GAAAGAGGGAGAAGAGGAAGAGGAAGGAGAGGAGGCACAGGACGTTTTTT
ACTATGTCAAGCGTGGGATGGTTGAGGAGGTGTTGGCACGACTTGAGAAA
GGAGAGCGAGAGGGAGAACCACGGGTGGATATAGATGTTAGAGACGAGGA
AGGCCGAACATTGCTGCATTGGGCCGTGGACAGAAATCATCGAGTCCTAG
TAGAATTGCTGCTGACAAGAGGATCGGATATGACGGCCGAGGATGCAGAG
GGAGAAACGCCTCTGGATTATGCGCGGCTATGTGAGCACGATGCACTTGT
GGAAATTTTGGTCAATTTAGAGAAGGCGCCCGGGGCAAGGAAGAGCGTTG
GTTTGGAGAGCACACAGGAAGCAAGTAAAGGGAAGGAAAGAGCAGCAAAA
GGATGACTGGAATGAGATGTAAAGCGAAATAAGACCCTAATGGAAAAAA
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protein sequence of NO16G02490.1

>NO16G02490.1-protein ID=NO16G02490.1-protein|Name=NO16G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MDGADNKINATMLFAHCAALVRQPPTSLGHVRLTEDQKLKLYALFKQATE
GDNATTCPSLLDIVGRAKWNAWQAMAGISHADAQARYVACIQEWYGDGAA
SGMKDTAQRDGAGRNLGRKDDDNFSFGSSQLRALGEIGIDGCIVRRERRK
GEERGKEGEEEEEGEEAQDVFYYVKRGMVEEVLARLEKGEREGEPRVDID
VRDEEGRTLLHWAVDRNHRVLVELLLTRGSDMTAEDAEGETPLDYARLCE
HDALVEILVNLEKAPGARKSVGLESTQEASKGKERAAKG*
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Synonyms
Publications